RLG00000033286

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0019073
Physical Location & Seq
Forward (+)
25329302 .. 25332339
3038 bp
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UTR
Exon/CDS
Intron
RLM00000033286

Sequence Viewer

Length: 438 bp
ATGGACGAGATGAAGACCCTGGAGTCTCACGATCAGCTGTCTCGGTTCTTGAGCTCCGGCCACTCCGACGAGAAATTCGTCACTGACATCGTCATCAGGTTCACCCTCGCCAGAAGGGACACGACCTCGGCGACTTTGACCTGGTTCTTCTGGCTAATCTCAAACCATCCAAACATCGAAAGTGAAATTCTCAAGGAGATCAATGAGAATATAGAGACTGGAGCCGGATATGATGAAGTGAAGGACATGAGGCTGTACCCGCCGGTTCTGACAGACAGCAAAGAGGCGGTAGATGGAGCATATCTGGGGGTGTTTGAAGACATGGCAACGATGTCTCTCGGCGTCGTCGAGCACATTGGGGTGCAACCGCTCCTCTACAAAGAATATTACTTGACCATTGTTATGTGGTTCTTCGGTTCAAGTTGCCGGACAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00073 map00073
Pfam Domains
Protein Families
p450

Protein Analysis

146

Amino Acids

16.66

Weight (kDa)

4.64

Isoelectric Point (pI)

48.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 27 - 85 3.1e-07 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019073)

Species Orthologous Gene IDs
rosa_laevigata RLG00000015938 RLG00000022485 RLG00000033286
rosa_multiflora Rmu_sc0004239.1_g000014
rosa_roxburghii Rroxscaffold_1G00024000
rosa_rugosa Rorug02G0287100
rosa_samantha Rh2BG292900 Rh2DG287800 Rh5DG009600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 22
AccBSI CCGCTC 1 cut(s) 370
AciI CCGC 3 cut(s) 260, 287, 368
AcoI YGGCCR 1 cut(s) 58
AcsI RAATTY 2 cut(s) 74, 186
AcyI GRCGYC 1 cut(s) 342
AfaI GTAC 1 cut(s) 257
AgsI TTSAA 2 cut(s) 317, 420
AjnI CCWGG 2 cut(s) 18, 140
AluBI AGCT 2 cut(s) 37, 54
AluI AGCT 2 cut(s) 37, 54
Alw21I GWGCWC 2 cut(s) 56, 354
Alw26I GTCTC 4 cut(s) 30, 45, 209, 339
AoxI GGCC 1 cut(s) 58
ApoI RAATTY 2 cut(s) 74, 186
ArsI GACNNNNNNTTYG 2 cut(s) 59, 91
AsuHPI GGTGA 1 cut(s) 94
BanII GRGCYC 1 cut(s) 56
BbsI GAAGAC 2 cut(s) 20, 324
Bbv12I GWGCWC 2 cut(s) 56, 354
BccI CCATC 2 cut(s) 174, 287
BciT130I CCWGG 2 cut(s) 20, 142
BcoDI GTCTC 4 cut(s) 30, 45, 209, 339
BfaI CTAG 1 cut(s) 436
Bme1390I CCNGG 2 cut(s) 20, 142
BmiI GGNNCC 1 cut(s) 223
BmrFI CCNGG 2 cut(s) 20, 142
BpiI GAAGAC 2 cut(s) 20, 324
BpmI CTGGAG 2 cut(s) 41, 240
BpuEI CTTGAG 2 cut(s) 70, 176
BsaHI GRCGYC 1 cut(s) 342
BsaJI CCNNGG 2 cut(s) 18, 126
Bse118I RCCGGY 1 cut(s) 262
Bse1I ACTGG 1 cut(s) 223
BseBI CCWGG 2 cut(s) 20, 142
BseDI CCNNGG 2 cut(s) 18, 126
BseGI GGATG 1 cut(s) 166
BseNI ACTGG 1 cut(s) 223
BseRI GAGGAG 1 cut(s) 362
BshFI GGCC 1 cut(s) 60
BsiHKAI GWGCWC 2 cut(s) 56, 354
BsiSI CCGG 4 cut(s) 57, 225, 263, 427
BslFI GGGAC 1 cut(s) 131
BsmAI GTCTC 4 cut(s) 30, 45, 209, 339
BsmFI GGGAC 1 cut(s) 131
BsnI GGCC 1 cut(s) 60
Bsp1286I GDGCHC 2 cut(s) 56, 354
Bsp143I GATC 2 cut(s) 31, 198
BspACI CCGC 3 cut(s) 260, 287, 368
BspANI GGCC 1 cut(s) 60
BspLI GGNNCC 1 cut(s) 223
BsrBI CCGCTC 1 cut(s) 370
BsrFI RCCGGY 1 cut(s) 262
BsrI ACTGG 1 cut(s) 223
BssAI RCCGGY 1 cut(s) 262
BssECI CCNNGG 2 cut(s) 18, 126
BssMI GATC 2 cut(s) 31, 198
BssNI GRCGYC 1 cut(s) 342
Bst2UI CCWGG 2 cut(s) 20, 142
BstACI GRCGYC 1 cut(s) 342
BstF5I GGATG 1 cut(s) 166
BstKTI GATC 2 cut(s) 34, 201
BstMAI GTCTC 4 cut(s) 30, 45, 209, 339
BstMBI GATC 2 cut(s) 31, 198
BstMWI GCNNNNNNNGC 1 cut(s) 259
BstNI CCWGG 2 cut(s) 20, 142
BstSCI CCNGG 2 cut(s) 18, 140
BstV2I GAAGAC 2 cut(s) 20, 324
BsuRI GGCC 1 cut(s) 60
BtsCI GGATG 1 cut(s) 166
BtsIMutI CAGTG 1 cut(s) 81
Cfr10I RCCGGY 1 cut(s) 262
CseI GACGC 1 cut(s) 331
CsiI ACCWGGT 1 cut(s) 140
Csp6I GTAC 1 cut(s) 256
CviAII CATG 2 cut(s) 247, 322
CviJI RGCY 6 cut(s) 37, 54, 60, 154, 224, 253
CviKI_1 RGCY 6 cut(s) 37, 54, 60, 154, 224, 253
CviQI GTAC 1 cut(s) 256
DpnI GATC 2 cut(s) 33, 200
DpnII GATC 2 cut(s) 31, 198
DrdI GACNNNNNNGTC 1 cut(s) 22
DseDI GACNNNNNNGTC 1 cut(s) 22
EaeI YGGCCR 1 cut(s) 58
Ecl136II GAGCTC 1 cut(s) 54
Eco24I GRGCYC 1 cut(s) 56
Eco53kI GAGCTC 1 cut(s) 54
EcoICRI GAGCTC 1 cut(s) 54
EcoRII CCWGG 2 cut(s) 18, 140
EcoT38I GRGCYC 1 cut(s) 56
FaeI CATG 2 cut(s) 250, 325
FaiI YATR 6 cut(s) 212, 231, 248, 301, 323, 404
FaqI GGGAC 1 cut(s) 131
FatI CATG 2 cut(s) 246, 321
FauI CCCGC 1 cut(s) 267
FokI GGATG 1 cut(s) 153
FriOI GRGCYC 1 cut(s) 56
FspBI CTAG 1 cut(s) 436
GsuI CTGGAG 2 cut(s) 41, 240
HaeIII GGCC 1 cut(s) 60
HapII CCGG 4 cut(s) 57, 225, 263, 427
HgaI GACGC 1 cut(s) 331
Hin1I GRCGYC 1 cut(s) 342
Hin1II CATG 2 cut(s) 250, 325
HinfI GANTC 1 cut(s) 23
HpaII CCGG 4 cut(s) 57, 225, 263, 427
HphI GGTGA 1 cut(s) 94
Hpy166II GTNNAC 1 cut(s) 102
Hpy188I TCNGA 2 cut(s) 67, 270
Hpy188III TCNNGA 2 cut(s) 29, 49
Hpy8I GTNNAC 1 cut(s) 102
Hpy99I CGWCG 3 cut(s) 71, 347, 350
HpyAV CCTTC 2 cut(s) 108, 235
HpyCH4V TGCA 1 cut(s) 364
HpyF10VI GCNNNNNNNGC 1 cut(s) 259
Hsp92I GRCGYC 1 cut(s) 342
Hsp92II CATG 2 cut(s) 250, 325
Kzo9I GATC 2 cut(s) 31, 198
LmnI GCTCC 4 cut(s) 59, 221, 296, 375
MabI ACCWGGT 1 cut(s) 140
MaeI CTAG 1 cut(s) 436
MaeIII GTNAC 1 cut(s) 79
MalI GATC 2 cut(s) 33, 200
MbiI CCGCTC 1 cut(s) 370
MboI GATC 2 cut(s) 31, 198
MboII GAAGA 4 cut(s) 25, 139, 329, 403
MhlI GDGCHC 2 cut(s) 56, 354
MluCI AATT 2 cut(s) 74, 186
MlyI GAGTC 1 cut(s) 32
MmeI TCCRAC 1 cut(s) 90
MnlI CCTC 5 cut(s) 116, 136, 243, 277, 383
MslI CAYNNNNRTG 2 cut(s) 359, 401
MspA1I CMGCKG 1 cut(s) 37
MspI CCGG 4 cut(s) 57, 225, 263, 427
MspR9I CCNGG 2 cut(s) 20, 142
MvaI CCWGG 2 cut(s) 20, 142
MwoI GCNNNNNNNGC 1 cut(s) 259
NdeII GATC 2 cut(s) 31, 198
NlaIII CATG 2 cut(s) 250, 325
NlaIV GGNNCC 1 cut(s) 223
NmeAIII GCCGAG 2 cut(s) 107, 318
NmuCI GTSAC 1 cut(s) 79
PcsI WCGNNNNNNNCGW 3 cut(s) 75, 128, 345
PflFI GACNNNGTC 1 cut(s) 89
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
Psp124BI GAGCTC 1 cut(s) 56
Psp6I CCWGG 2 cut(s) 18, 140
PspGI CCWGG 2 cut(s) 18, 140
PspN4I GGNNCC 1 cut(s) 223
PsyI GACNNNGTC 1 cut(s) 89
PvuII CAGCTG 1 cut(s) 37
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
RseI CAYNNNNRTG 2 cut(s) 359, 401
SacI GAGCTC 1 cut(s) 56
Sau3AI GATC 2 cut(s) 31, 198
SchI GAGTC 1 cut(s) 32
ScrFI CCNGG 2 cut(s) 20, 142
SduI GDGCHC 2 cut(s) 56, 354
SetI ASST 5 cut(s) 39, 56, 101, 128, 143
SexAI ACCWGGT 1 cut(s) 140
SmiMI CAYNNNNRTG 2 cut(s) 359, 401
SmlI CTYRAG 2 cut(s) 49, 191
SmoI CTYRAG 2 cut(s) 49, 191
Sse9I AATT 2 cut(s) 74, 186
SsiI CCGC 3 cut(s) 260, 287, 368
SspI AATATT 1 cut(s) 386
SspMI CTAG 1 cut(s) 436
SstI GAGCTC 1 cut(s) 56
StyD4I CCNGG 2 cut(s) 18, 140
TaqI TCGA 2 cut(s) 177, 348
TasI AATT 2 cut(s) 74, 186
TscAI CASTG 1 cut(s) 88
TseFI GTSAC 1 cut(s) 79
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 2 cut(s) 26, 249
TspRI CASTG 1 cut(s) 88
Tth111I GACNNNGTC 1 cut(s) 89
XapI RAATTY 2 cut(s) 74, 186
XspI CTAG 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.