Rorug02G0287100

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0019073
Physical Location & Seq
Forward (+)
31339336 .. 31340434
1099 bp
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UTR
Exon/CDS
Intron
Rorug02G0287100.1

Sequence Viewer

Length: 537 bp
ATGGTTGTATGTGAGGACCAACGTGGTGGTGGAGGTGGAGGTGGAGATGGCAGCGGAGCTTCATTAATATGGTTTGTTACTTGCTTTTTATTCATATCTATAATGGCCGGAGGCGTATGCCTTTTGATGTATATAATCATTCCTCATGACCCAGCAACCATGTCTTGGCTTCCTATTACTGGAGTTGCATTGATTTGCCTTCCATGGTTATTTTGGATCTTCACATTCATATATCGTATCATTACTCGGGTGTGCATTAAGAACTCTAATTCTAGTGGCATTGCAACAATTGCAAATGTTAATACAGGTGGTCTTGTTGGTGGAAAGAATAATACTAACGCTGCAAATACATCTACGACAGCGGTGTCAAATGAGGTTGCTGGGGATCTAAAGATATCAGATGGTTATGTTCGTGGTTGTCTTGGTGGACAACCAGTAGGAAGCGGCATTGCAAAGCGAAGTAATTCGTCACTAACCAATCAGAGCCTTGCATCTCATGAGAGTGAATTGCCTTTAGCCTCATCGATGGTATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00073 map00073
Pfam Domains
Protein Families
p450

Protein Analysis

178

Amino Acids

18.45

Weight (kDa)

6.69

Isoelectric Point (pI)

34.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019073)

Species Orthologous Gene IDs
rosa_laevigata RLG00000015938 RLG00000022485 RLG00000033286
rosa_multiflora Rmu_sc0004239.1_g000014
rosa_roxburghii Rroxscaffold_1G00024000
rosa_rugosa Rorug02G0287100
rosa_samantha Rh2BG292900 Rh2DG287800 Rh5DG009600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 364
AccB7I CCANNNNNTGG 1 cut(s) 165
AciI CCGC 3 cut(s) 54, 362, 444
AclWI GGATC 2 cut(s) 224, 393
AcoI YGGCCR 1 cut(s) 105
AfiI CCNNNNNNNGG 2 cut(s) 165, 179
AluBI AGCT 1 cut(s) 59
AluI AGCT 1 cut(s) 59
AlwI GGATC 2 cut(s) 224, 393
Ama87I CYCGRG 1 cut(s) 246
AoxI GGCC 1 cut(s) 105
ApeKI GCWGC 2 cut(s) 51, 341
AseI ATTAAT 1 cut(s) 65
Asp700I GAANNNNTTC 1 cut(s) 463
AspS9I GGNCC 1 cut(s) 16
AvaI CYCGRG 1 cut(s) 246
AvaII GGWCC 1 cut(s) 16
BbvI GCAGC 2 cut(s) 63, 328
BccI CCATC 3 cut(s) 41, 395, 520
BfaI CTAG 1 cut(s) 273
BisI GCNGC 3 cut(s) 52, 342, 445
BlsI GCNGC 3 cut(s) 53, 343, 446
Bme18I GGWCC 1 cut(s) 16
BmeT110I CYCGRG 1 cut(s) 246
BmgT120I GGNCC 1 cut(s) 16
BmsI GCATC 1 cut(s) 500
BpmI CTGGAG 1 cut(s) 201
Bsa29I ATCGAT 1 cut(s) 524
BsaJI CCNNGG 1 cut(s) 203
Bsc4I CCNNNNNNNGG 2 cut(s) 165, 179
Bse1I ACTGG 2 cut(s) 184, 434
Bse3DI GCAATG 2 cut(s) 279, 447
BseCI ATCGAT 1 cut(s) 524
BseDI CCNNGG 1 cut(s) 203
BseLI CCNNNNNNNGG 2 cut(s) 165, 179
BseMI GCAATG 2 cut(s) 279, 447
BseNI ACTGG 2 cut(s) 184, 434
BseXI GCAGC 2 cut(s) 63, 328
BseYI CCCAGC 2 cut(s) 151, 380
BshFI GGCC 1 cut(s) 107
BshVI ATCGAT 1 cut(s) 524
BsiHKCI CYCGRG 1 cut(s) 246
BsiSI CCGG 1 cut(s) 108
BslI CCNNNNNNNGG 2 cut(s) 165, 179
BsnI GGCC 1 cut(s) 107
BsoBI CYCGRG 1 cut(s) 246
Bsp143I GATC 2 cut(s) 216, 385
Bsp19I CCATGG 1 cut(s) 203
BspACI CCGC 3 cut(s) 54, 362, 444
BspANI GGCC 1 cut(s) 107
BspDI ATCGAT 1 cut(s) 524
BspHI TCATGA 2 cut(s) 145, 496
BspPI GGATC 2 cut(s) 224, 393
BsrDI GCAATG 2 cut(s) 279, 447
BsrI ACTGG 2 cut(s) 184, 434
BssECI CCNNGG 1 cut(s) 203
BssMI GATC 2 cut(s) 216, 385
BssT1I CCWWGG 1 cut(s) 203
BstAPI GCANNNNNTGC 1 cut(s) 290
BstDSI CCRYGG 1 cut(s) 203
BstKTI GATC 2 cut(s) 219, 388
BstMBI GATC 2 cut(s) 216, 385
BstMWI GCNNNNNNNGC 1 cut(s) 290
BstV1I GCAGC 2 cut(s) 63, 328
BstX2I RGATCY 2 cut(s) 216, 385
BstXI CCANNNNNNTGG 1 cut(s) 26
BstYI RGATCY 2 cut(s) 216, 385
Bsu15I ATCGAT 1 cut(s) 524
BsuRI GGCC 1 cut(s) 107
BsuTUI ATCGAT 1 cut(s) 524
BtgI CCRYGG 1 cut(s) 203
CciI TCATGA 2 cut(s) 145, 496
Cfr13I GGNCC 1 cut(s) 16
ClaI ATCGAT 1 cut(s) 524
CviAII CATG 4 cut(s) 146, 160, 204, 497
CviJI RGCY 5 cut(s) 59, 107, 169, 486, 518
CviKI_1 RGCY 5 cut(s) 59, 107, 169, 486, 518
DpnI GATC 2 cut(s) 218, 387
DpnII GATC 2 cut(s) 216, 385
DrdI GACNNNNNNGTC 1 cut(s) 364
DseDI GACNNNNNNGTC 1 cut(s) 364
EaeI YGGCCR 1 cut(s) 105
Eco130I CCWWGG 1 cut(s) 203
Eco32I GATATC 1 cut(s) 396
Eco47I GGWCC 1 cut(s) 16
Eco88I CYCGRG 1 cut(s) 246
EcoRV GATATC 1 cut(s) 396
EcoT14I CCWWGG 1 cut(s) 203
ErhI CCWWGG 1 cut(s) 203
FaeI CATG 4 cut(s) 149, 163, 207, 500
FatI CATG 4 cut(s) 145, 159, 203, 496
Fnu4HI GCNGC 3 cut(s) 52, 342, 445
Fsp4HI GCNGC 3 cut(s) 52, 342, 445
FspBI CTAG 1 cut(s) 273
GluI GCNGC 3 cut(s) 52, 342, 445
GsaI CCCAGC 2 cut(s) 155, 384
GsuI CTGGAG 1 cut(s) 201
HaeIII GGCC 1 cut(s) 107
HapII CCGG 1 cut(s) 108
Hin1II CATG 4 cut(s) 149, 163, 207, 500
HpaII CCGG 1 cut(s) 108
Hpy166II GTNNAC 1 cut(s) 428
Hpy188I TCNGA 2 cut(s) 400, 483
Hpy188III TCNNGA 2 cut(s) 146, 497
Hpy8I GTNNAC 1 cut(s) 428
HpyAV CCTTC 1 cut(s) 209
HpyCH4IV ACGT 1 cut(s) 22
HpyCH4V TGCA 7 cut(s) 188, 255, 284, 293, 344, 452, 491
HpyF10VI GCNNNNNNNGC 1 cut(s) 290
HpySE526I ACGT 1 cut(s) 22
Hsp92II CATG 4 cut(s) 149, 163, 207, 500
Kzo9I GATC 2 cut(s) 216, 385
LmnI GCTCC 1 cut(s) 56
LpnPI CCDG 6 cut(s) 121, 165, 165, 291, 366, 447
Lsp1109I GCAGC 2 cut(s) 63, 328
LweI GCATC 1 cut(s) 500
MaeI CTAG 1 cut(s) 273
MaeII ACGT 1 cut(s) 22
MaeIII GTNAC 2 cut(s) 76, 468
MalI GATC 2 cut(s) 218, 387
MboI GATC 2 cut(s) 216, 385
MboII GAAGA 1 cut(s) 211
MfeI CAATTG 1 cut(s) 288
MflI RGATCY 2 cut(s) 216, 385
MluCI AATT 4 cut(s) 268, 288, 463, 506
MnlI CCTC 7 cut(s) 7, 26, 32, 104, 153, 367, 529
MroXI GAANNNNTTC 1 cut(s) 463
MseI TTAA 4 cut(s) 65, 258, 300, 535
MslI CAYNNNNRTG 2 cut(s) 67, 501
MspA1I CMGCKG 2 cut(s) 54, 362
MspI CCGG 1 cut(s) 108
MunI CAATTG 1 cut(s) 288
MwoI GCNNNNNNNGC 1 cut(s) 290
NcoI CCATGG 1 cut(s) 203
NdeII GATC 2 cut(s) 216, 385
NlaIII CATG 4 cut(s) 149, 163, 207, 500
NmuCI GTSAC 1 cut(s) 468
PagI TCATGA 2 cut(s) 145, 496
PdmI GAANNNNTTC 1 cut(s) 463
PflMI CCANNNNNTGG 1 cut(s) 165
PkrI GCNGC 3 cut(s) 53, 343, 446
PshBI ATTAAT 1 cut(s) 65
PspFI CCCAGC 2 cut(s) 151, 380
PspPI GGNCC 1 cut(s) 16
PsuI RGATCY 2 cut(s) 216, 385
RseI CAYNNNNRTG 2 cut(s) 67, 501
SaqAI TTAA 4 cut(s) 65, 258, 300, 535
SatI GCNGC 3 cut(s) 52, 342, 445
Sau3AI GATC 2 cut(s) 216, 385
Sau96I GGNCC 1 cut(s) 16
SetI ASST 6 cut(s) 25, 37, 43, 61, 310, 378
SfaNI GCATC 1 cut(s) 500
SinI GGWCC 1 cut(s) 16
SmiMI CAYNNNNRTG 2 cut(s) 67, 501
Sse9I AATT 4 cut(s) 268, 288, 463, 506
SsiI CCGC 3 cut(s) 54, 362, 444
SspMI CTAG 1 cut(s) 273
StyI CCWWGG 1 cut(s) 203
TaiI ACGT 1 cut(s) 25
TaqI TCGA 1 cut(s) 524
TasI AATT 4 cut(s) 268, 288, 463, 506
TauI GCSGC 1 cut(s) 447
Tru1I TTAA 4 cut(s) 65, 258, 300, 535
Tru9I TTAA 4 cut(s) 65, 258, 300, 535
TseFI GTSAC 1 cut(s) 468
TseI GCWGC 2 cut(s) 51, 341
Tsp45I GTSAC 1 cut(s) 468
TspDTI ATGAA 3 cut(s) 51, 82, 217
Van91I CCANNNNNTGG 1 cut(s) 165
VpaK11BI GGWCC 1 cut(s) 16
VspI ATTAAT 1 cut(s) 65
XcmI CCANNNNNNNNNTGG 2 cut(s) 26, 210
XmnI GAANNNNTTC 1 cut(s) 463
XspI CTAG 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.