Rh2DG287800

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0019073
Physical Location & Seq
Forward (+)
33518860 .. 33519195
336 bp
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UTR
Exon/CDS
Intron
Rh2DG287800.1

Sequence Viewer

Length: 336 bp
ATGGACGAGATGAAGACCCTGGAGTCTCACGATCAGCTGTCTCGATTCTTGAGCTCGGGCCACTCCGACGAGAAATTCATCACTGACATCGTCATCAGCTTCACCCTCGCCGGAAGGAACACGACCTCGACGGCTTTGACCTGGTTCTTCTGGCTAATCTCAAACCATCCAAACATTGAAAGAGAAATTCTCAAGGAGATCATTGAGAAAACGGAGACCGGAGCCGGATATGATGAAGCGAAGAACATGAGGTTGTACCCGCCAGTTATGACGGACAACAAAGAGGCGGTAGATGGAGCAGATTTGGGGCAAGGACTGGCCGATTTCCGACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00073 map00073
Pfam Domains
Protein Families
p450

Protein Analysis

111

Amino Acids

12.57

Weight (kDa)

4.72

Isoelectric Point (pI)

35.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 24 - 84 8.3e-08 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019073)

Species Orthologous Gene IDs
rosa_laevigata RLG00000015938 RLG00000022485 RLG00000033286
rosa_multiflora Rmu_sc0004239.1_g000014
rosa_roxburghii Rroxscaffold_1G00024000
rosa_rugosa Rorug02G0287100
rosa_samantha Rh2BG292900 Rh2DG287800 Rh5DG009600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 22
AciI CCGC 2 cut(s) 260, 287
AcoI YGGCCR 1 cut(s) 318
AcsI RAATTY 2 cut(s) 74, 186
AfaI GTAC 1 cut(s) 257
AgsI TTSAA 1 cut(s) 179
AjnI CCWGG 2 cut(s) 18, 140
AluBI AGCT 3 cut(s) 37, 54, 99
AluI AGCT 3 cut(s) 37, 54, 99
Alw21I GWGCWC 1 cut(s) 56
Alw26I GTCTC 3 cut(s) 30, 45, 209
Ama87I CYCGRG 1 cut(s) 55
AoxI GGCC 2 cut(s) 58, 318
ApoI RAATTY 2 cut(s) 74, 186
AspS9I GGNCC 1 cut(s) 58
AsuHPI GGTGA 1 cut(s) 94
AvaI CYCGRG 1 cut(s) 55
BanII GRGCYC 1 cut(s) 56
BbsI GAAGAC 1 cut(s) 20
Bbv12I GWGCWC 1 cut(s) 56
BccI CCATC 2 cut(s) 174, 287
BceAI ACGGC 1 cut(s) 147
BciT130I CCWGG 2 cut(s) 20, 142
BcoDI GTCTC 3 cut(s) 30, 45, 209
BfaI CTAG 1 cut(s) 334
Bme1390I CCNGG 2 cut(s) 20, 142
BmeT110I CYCGRG 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 58
BmiI GGNNCC 1 cut(s) 223
BmrFI CCNGG 2 cut(s) 20, 142
BpiI GAAGAC 1 cut(s) 20
BplI GAGNNNNNCTC 2 cut(s) 174, 206
BpmI CTGGAG 1 cut(s) 41
BpuEI CTTGAG 2 cut(s) 70, 176
BsaI GGTCTC 1 cut(s) 209
BsaJI CCNNGG 1 cut(s) 18
BsaWI WCCGGW 1 cut(s) 218
Bse1I ACTGG 2 cut(s) 263, 321
BseBI CCWGG 2 cut(s) 20, 142
BseDI CCNNGG 1 cut(s) 18
BseGI GGATG 1 cut(s) 166
BseNI ACTGG 2 cut(s) 263, 321
BshFI GGCC 2 cut(s) 60, 320
BsiHKAI GWGCWC 1 cut(s) 56
BsiHKCI CYCGRG 1 cut(s) 55
BsiSI CCGG 3 cut(s) 111, 219, 225
BsmAI GTCTC 3 cut(s) 30, 45, 209
BsnI GGCC 2 cut(s) 60, 320
Bso31I GGTCTC 1 cut(s) 209
BsoBI CYCGRG 1 cut(s) 55
Bsp1286I GDGCHC 1 cut(s) 56
Bsp143I GATC 2 cut(s) 31, 198
BspACI CCGC 2 cut(s) 260, 287
BspANI GGCC 2 cut(s) 60, 320
BspLI GGNNCC 1 cut(s) 223
BspTNI GGTCTC 1 cut(s) 209
BsrI ACTGG 2 cut(s) 263, 321
BssECI CCNNGG 1 cut(s) 18
BssMI GATC 2 cut(s) 31, 198
Bst2UI CCWGG 2 cut(s) 20, 142
BstF5I GGATG 1 cut(s) 166
BstKTI GATC 2 cut(s) 34, 201
BstMAI GTCTC 3 cut(s) 30, 45, 209
BstMBI GATC 2 cut(s) 31, 198
BstNI CCWGG 2 cut(s) 20, 142
BstSCI CCNGG 2 cut(s) 18, 140
BstV2I GAAGAC 1 cut(s) 20
BsuRI GGCC 2 cut(s) 60, 320
BtsCI GGATG 1 cut(s) 166
BtsIMutI CAGTG 1 cut(s) 81
Cfr13I GGNCC 1 cut(s) 58
CsiI ACCWGGT 1 cut(s) 140
Csp6I GTAC 1 cut(s) 256
CviAII CATG 1 cut(s) 247
CviJI RGCY 8 cut(s) 37, 54, 60, 99, 134, 154, 224, 320
CviKI_1 RGCY 8 cut(s) 37, 54, 60, 99, 134, 154, 224, 320
CviQI GTAC 1 cut(s) 256
DpnI GATC 2 cut(s) 33, 200
DpnII GATC 2 cut(s) 31, 198
DrdI GACNNNNNNGTC 1 cut(s) 22
DseDI GACNNNNNNGTC 1 cut(s) 22
EaeI YGGCCR 1 cut(s) 318
Ecl136II GAGCTC 1 cut(s) 54
Eco24I GRGCYC 1 cut(s) 56
Eco31I GGTCTC 1 cut(s) 209
Eco53kI GAGCTC 1 cut(s) 54
Eco88I CYCGRG 1 cut(s) 55
EcoICRI GAGCTC 1 cut(s) 54
EcoRII CCWGG 2 cut(s) 18, 140
EcoT38I GRGCYC 1 cut(s) 56
FaeI CATG 1 cut(s) 250
FaiI YATR 3 cut(s) 231, 248, 269
FatI CATG 1 cut(s) 246
FauI CCCGC 1 cut(s) 267
FokI GGATG 1 cut(s) 153
FriOI GRGCYC 1 cut(s) 56
FspBI CTAG 1 cut(s) 334
GsuI CTGGAG 1 cut(s) 41
HaeIII GGCC 2 cut(s) 60, 320
HapII CCGG 3 cut(s) 111, 219, 225
Hin1II CATG 1 cut(s) 250
HinfI GANTC 2 cut(s) 23, 45
HpaII CCGG 3 cut(s) 111, 219, 225
HphI GGTGA 1 cut(s) 94
Hpy188I TCNGA 2 cut(s) 67, 329
Hpy188III TCNNGA 3 cut(s) 29, 42, 49
Hpy99I CGWCG 2 cut(s) 71, 133
HpyAV CCTTC 1 cut(s) 108
Hsp92II CATG 1 cut(s) 250
Kzo9I GATC 2 cut(s) 31, 198
LmnI GCTCC 2 cut(s) 221, 296
MabI ACCWGGT 1 cut(s) 140
MaeI CTAG 1 cut(s) 334
MalI GATC 2 cut(s) 33, 200
MboI GATC 2 cut(s) 31, 198
MboII GAAGA 3 cut(s) 25, 139, 253
MhlI GDGCHC 1 cut(s) 56
MluCI AATT 2 cut(s) 74, 186
MlyI GAGTC 1 cut(s) 32
MmeI TCCRAC 1 cut(s) 90
MnlI CCTC 4 cut(s) 116, 136, 243, 277
MspA1I CMGCKG 1 cut(s) 37
MspI CCGG 3 cut(s) 111, 219, 225
MspR9I CCNGG 2 cut(s) 20, 142
MvaI CCWGG 2 cut(s) 20, 142
NdeII GATC 2 cut(s) 31, 198
NlaIII CATG 1 cut(s) 250
NlaIV GGNNCC 1 cut(s) 223
PfeI GAWTC 1 cut(s) 45
PflFI GACNNNGTC 1 cut(s) 89
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
Psp124BI GAGCTC 1 cut(s) 56
Psp6I CCWGG 2 cut(s) 18, 140
PspGI CCWGG 2 cut(s) 18, 140
PspN4I GGNNCC 1 cut(s) 223
PspPI GGNCC 1 cut(s) 58
PsyI GACNNNGTC 1 cut(s) 89
PvuII CAGCTG 1 cut(s) 37
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
SacI GAGCTC 1 cut(s) 56
Sau3AI GATC 2 cut(s) 31, 198
Sau96I GGNCC 1 cut(s) 58
SchI GAGTC 1 cut(s) 32
ScrFI CCNGG 2 cut(s) 20, 142
SduI GDGCHC 1 cut(s) 56
SetI ASST 6 cut(s) 39, 56, 101, 128, 143, 254
SexAI ACCWGGT 1 cut(s) 140
SmlI CTYRAG 2 cut(s) 49, 191
SmoI CTYRAG 2 cut(s) 49, 191
Sse9I AATT 2 cut(s) 74, 186
SsiI CCGC 2 cut(s) 260, 287
SspMI CTAG 1 cut(s) 334
SstI GAGCTC 1 cut(s) 56
StyD4I CCNGG 2 cut(s) 18, 140
TaqI TCGA 2 cut(s) 43, 128
TasI AATT 2 cut(s) 74, 186
TfiI GAWTC 1 cut(s) 45
TscAI CASTG 1 cut(s) 88
TspDTI ATGAA 3 cut(s) 26, 67, 249
TspGWI ACGGA 2 cut(s) 227, 287
TspRI CASTG 1 cut(s) 88
Tth111I GACNNNGTC 1 cut(s) 89
XapI RAATTY 2 cut(s) 74, 186
XspI CTAG 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.