RLG00000022485

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0019073
Physical Location & Seq
Reverse (-)
1469399 .. 1470251
853 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022485

Sequence Viewer

Length: 321 bp
ATGAAGACCCTGGAGTCTCACGATCAGCTGTCTCGGTTCTTGAGCTCCGGCTACTCCGACGAGAAATTCGTCACTAACATCGTCAGCAGCTTCACCCTCGCCAGAAGGGACACAACCTCGGCGGCTTTGACCTGGTTCTTCTGGCTAATCTCAAACCATCCAAACATCGAAAGCGAAATTCTCAAGGAGATCAATGAGAATACGGAGACCGGAGCCGGATATGATGAACCGAAAGACATGAGGCTGTACCCTCCAGTTCTGACGGACAGCAAAGAGGCGGTAGATGGAGCATATCTGGGGCGGGGCCGAGGATCTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00073 map00073
Pfam Domains
Protein Families
p450

Protein Analysis

107

Amino Acids

11.92

Weight (kDa)

4.92

Isoelectric Point (pI)

42.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 19 - 70 3.7e-06 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019073)

Species Orthologous Gene IDs
rosa_laevigata RLG00000015938 RLG00000022485 RLG00000033286
rosa_multiflora Rmu_sc0004239.1_g000014
rosa_roxburghii Rroxscaffold_1G00024000
rosa_rugosa Rorug02G0287100
rosa_samantha Rh2BG292900 Rh2DG287800 Rh5DG009600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 13
AciI CCGC 3 cut(s) 122, 278, 301
AclWI GGATC 1 cut(s) 319
AcsI RAATTY 2 cut(s) 65, 177
AfaI GTAC 1 cut(s) 248
AjnI CCWGG 2 cut(s) 9, 131
AluBI AGCT 3 cut(s) 28, 45, 90
AluI AGCT 3 cut(s) 28, 45, 90
Alw21I GWGCWC 1 cut(s) 47
Alw26I GTCTC 3 cut(s) 21, 36, 200
AlwI GGATC 1 cut(s) 319
AoxI GGCC 1 cut(s) 304
ApeKI GCWGC 1 cut(s) 87
ApoI RAATTY 2 cut(s) 65, 177
ArsI GACNNNNNNTTYG 2 cut(s) 50, 82
AspS9I GGNCC 1 cut(s) 304
AsuHPI GGTGA 1 cut(s) 85
BanII GRGCYC 1 cut(s) 47
BbsI GAAGAC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 47
BbvI GCAGC 1 cut(s) 99
BccI CCATC 2 cut(s) 165, 278
BciT130I CCWGG 2 cut(s) 11, 133
BcoDI GTCTC 3 cut(s) 21, 36, 200
BisI GCNGC 2 cut(s) 88, 123
BlsI GCNGC 2 cut(s) 89, 124
Bme1390I CCNGG 2 cut(s) 11, 133
BmgT120I GGNCC 1 cut(s) 304
BmiI GGNNCC 2 cut(s) 214, 305
BmrFI CCNGG 2 cut(s) 11, 133
BpiI GAAGAC 1 cut(s) 11
BpmI CTGGAG 2 cut(s) 32, 237
BpuEI CTTGAG 2 cut(s) 61, 167
BsaI GGTCTC 1 cut(s) 200
BsaJI CCNNGG 3 cut(s) 9, 117, 307
BsaWI WCCGGW 1 cut(s) 209
Bse1I ACTGG 1 cut(s) 254
BseBI CCWGG 2 cut(s) 11, 133
BseDI CCNNGG 3 cut(s) 9, 117, 307
BseGI GGATG 1 cut(s) 157
BseNI ACTGG 1 cut(s) 254
BseXI GCAGC 1 cut(s) 99
BshFI GGCC 1 cut(s) 306
BsiHKAI GWGCWC 1 cut(s) 47
BsiSI CCGG 3 cut(s) 48, 210, 216
BslFI GGGAC 1 cut(s) 122
BsmAI GTCTC 3 cut(s) 21, 36, 200
BsmFI GGGAC 1 cut(s) 122
BsnI GGCC 1 cut(s) 306
Bso31I GGTCTC 1 cut(s) 200
Bsp1286I GDGCHC 1 cut(s) 47
Bsp143I GATC 3 cut(s) 22, 189, 311
BspACI CCGC 3 cut(s) 122, 278, 301
BspANI GGCC 1 cut(s) 306
BspLI GGNNCC 2 cut(s) 214, 305
BspPI GGATC 1 cut(s) 319
BspTNI GGTCTC 1 cut(s) 200
BsrI ACTGG 1 cut(s) 254
BssECI CCNNGG 3 cut(s) 9, 117, 307
BssMI GATC 3 cut(s) 22, 189, 311
Bst2UI CCWGG 2 cut(s) 11, 133
BstF5I GGATG 1 cut(s) 157
BstKTI GATC 3 cut(s) 25, 192, 314
BstMAI GTCTC 3 cut(s) 21, 36, 200
BstMBI GATC 3 cut(s) 22, 189, 311
BstNI CCWGG 2 cut(s) 11, 133
BstSCI CCNGG 2 cut(s) 9, 131
BstV1I GCAGC 1 cut(s) 99
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 311
BstYI RGATCY 1 cut(s) 311
BsuRI GGCC 1 cut(s) 306
BtsCI GGATG 1 cut(s) 157
Cfr13I GGNCC 1 cut(s) 304
CsiI ACCWGGT 1 cut(s) 131
Csp6I GTAC 1 cut(s) 247
CviAII CATG 1 cut(s) 238
CviJI RGCY 9 cut(s) 28, 45, 51, 90, 125, 145, 215, 244, 306
CviKI_1 RGCY 9 cut(s) 28, 45, 51, 90, 125, 145, 215, 244, 306
CviQI GTAC 1 cut(s) 247
DpnI GATC 3 cut(s) 24, 191, 313
DpnII GATC 3 cut(s) 22, 189, 311
DrdI GACNNNNNNGTC 1 cut(s) 13
DseDI GACNNNNNNGTC 1 cut(s) 13
Ecl136II GAGCTC 1 cut(s) 45
Eco24I GRGCYC 1 cut(s) 47
Eco31I GGTCTC 1 cut(s) 200
Eco53kI GAGCTC 1 cut(s) 45
EcoICRI GAGCTC 1 cut(s) 45
EcoRII CCWGG 2 cut(s) 9, 131
EcoT38I GRGCYC 1 cut(s) 47
FaeI CATG 1 cut(s) 241
FaiI YATR 3 cut(s) 222, 239, 292
FaqI GGGAC 1 cut(s) 122
FatI CATG 1 cut(s) 237
FauI CCCGC 1 cut(s) 294
Fnu4HI GCNGC 2 cut(s) 88, 123
FokI GGATG 1 cut(s) 144
FriOI GRGCYC 1 cut(s) 47
Fsp4HI GCNGC 2 cut(s) 88, 123
GluI GCNGC 2 cut(s) 88, 123
GsuI CTGGAG 2 cut(s) 32, 237
HaeIII GGCC 1 cut(s) 306
HapII CCGG 3 cut(s) 48, 210, 216
Hin1II CATG 1 cut(s) 241
HinfI GANTC 1 cut(s) 14
HpaII CCGG 3 cut(s) 48, 210, 216
HphI GGTGA 1 cut(s) 85
Hpy188I TCNGA 2 cut(s) 58, 261
Hpy188III TCNNGA 2 cut(s) 20, 40
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 1 cut(s) 99
Hsp92II CATG 1 cut(s) 241
Kzo9I GATC 3 cut(s) 22, 189, 311
LmnI GCTCC 3 cut(s) 50, 212, 287
Lsp1109I GCAGC 1 cut(s) 99
MabI ACCWGGT 1 cut(s) 131
MaeIII GTNAC 1 cut(s) 70
MalI GATC 3 cut(s) 24, 191, 313
MboI GATC 3 cut(s) 22, 189, 311
MboII GAAGA 2 cut(s) 16, 130
MflI RGATCY 1 cut(s) 311
MhlI GDGCHC 1 cut(s) 47
MluCI AATT 2 cut(s) 65, 177
MlyI GAGTC 1 cut(s) 23
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 6 cut(s) 107, 127, 234, 261, 268, 302
MspA1I CMGCKG 1 cut(s) 28
MspI CCGG 3 cut(s) 48, 210, 216
MspR9I CCNGG 2 cut(s) 11, 133
MvaI CCWGG 2 cut(s) 11, 133
NdeII GATC 3 cut(s) 22, 189, 311
NlaIII CATG 1 cut(s) 241
NlaIV GGNNCC 2 cut(s) 214, 305
NmeAIII GCCGAG 1 cut(s) 98
NmuCI GTSAC 1 cut(s) 70
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PkrI GCNGC 2 cut(s) 89, 124
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
Psp124BI GAGCTC 1 cut(s) 47
Psp6I CCWGG 2 cut(s) 9, 131
PspGI CCWGG 2 cut(s) 9, 131
PspN4I GGNNCC 2 cut(s) 214, 305
PspPI GGNCC 1 cut(s) 304
PsuI RGATCY 1 cut(s) 311
PvuII CAGCTG 1 cut(s) 28
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
SacI GAGCTC 1 cut(s) 47
SatI GCNGC 2 cut(s) 88, 123
Sau3AI GATC 3 cut(s) 22, 189, 311
Sau96I GGNCC 1 cut(s) 304
SchI GAGTC 1 cut(s) 23
ScrFI CCNGG 2 cut(s) 11, 133
SduI GDGCHC 1 cut(s) 47
SetI ASST 5 cut(s) 30, 47, 92, 119, 134
SexAI ACCWGGT 1 cut(s) 131
SmlI CTYRAG 2 cut(s) 40, 182
SmoI CTYRAG 2 cut(s) 40, 182
Sse9I AATT 2 cut(s) 65, 177
SsiI CCGC 3 cut(s) 122, 278, 301
SstI GAGCTC 1 cut(s) 47
StyD4I CCNGG 2 cut(s) 9, 131
TaqI TCGA 1 cut(s) 168
TasI AATT 2 cut(s) 65, 177
TauI GCSGC 1 cut(s) 125
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 1 cut(s) 87
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 2 cut(s) 17, 240
TspGWI ACGGA 2 cut(s) 218, 278
XapI RAATTY 2 cut(s) 65, 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.