RLG00000016180

Plant protein of unknown function (DUF936)

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
4498378 .. 4500412
2035 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016180

Sequence Viewer

Length: 1680 bp
ATGGCGATTTATCTGTCCAAGAAGCAGGATCAGCCTGCCGTCAGGACGGAGGCGAAGATCGAGAAGGGAAGATCACCGCAGCGGCGGCAGCCGTTTGCGAATAGAGAGAATGTTAATGTGGGAGGGAATGTGAATTCCGACGAGGGGAAGAAGGTCTCGGATCGGCCGGTGGCGGCCAGATTCTCATCTCCGGCCACCGCAAAGAGGTCTGCTTCAGCGGGGAAGAAGAATGTGGCCGTACCTCCGGCGGAGAGGGATCCATCGCCGGCCGGAAAAGTAAAGAGATCGTCGTCTCCGGCGCCGTCGAAATGTGTGGTTCCGAGCTTGATGGTGGCGCGTGAAGAGAATCGGAAGGTGGCTAAGGAGCCCTCGATTATTGTGCCGTCGAGGTACCGGCAGCCGTCGCCAATTGGGCGGAGGCAGGCGTCGCCGAATCCCCGAAGAGCTTCCATTTCTCCAGGGAGGAGATTGTCTGTTGGGGGAGCTAAGGACTCTGCTGCAAGGAAGAAAATGGCTACAATTGTTGCCGGAATTTCGAAGATTTCGGAAACAATTGCGGGGTCTGGTAAGAATAATCGGAAGGGATGGGACGACGAGTCGCCTGCGGTGCAGCAAAAGGAGAAGCCTGTGTCAAAGAACAAACCGGATGTGCAAGCAATTTTGCGAACTCAGGCTGCTCTTTCGAGACGATTAAGTGATGCAAAAACAACAAGTGATGATTGTTCGAGTGTGAAATCGAAGGCTAGCTCACATGAAGATTCCCCGGTCCAAGAGAAGCCAAGCTATGCAGCTCTGGGGATCACTGTTCATGAAAGGAAATGGACTGATGGTAGTGTTCCATTAGATGGAGTCTCTGCAGACCTTGCAAGACTTGGAAAGGAAGCTATGCAAAGGAAGGCACTTGCTGCCACAGCTGCAGCCGAAGCACTAGAGGAGGCGATTGCAACGGAGTCTCTTGTTAGGAAATTAAGCATGTTTGCAGAATTGTCGTCCACATCAAAGGTTGGGAACCCTTTACCTGCCATTGACCAGTTCTTTTCAATTTATGATGATGTTGTTAAATCAACAACAACTCTAGAATCAATTGCCTGCAACCGCAATTCTGAAGCACCTTATGATAACATTCCAACCGAGCAATCAAAATCAGTTTCTCTTTGGGTTGAAGCTGCCTTGGCTACTGATCTTGGAATTGTCTCTCTTCTTAGCCCCCAAGATCATGAGTCTCCACCCACTCTGCAGAAAAGTTTTTCAAAACGACAATCTCTCAACGCACCTGCCAAAGCTAATTTGAAGATTTCTTCTTTGTCGCCGCAGTCCAATGCTCATGTTGGGGATTGGAAGAAGGGAAATGGAATGAGAGAGACGGTTGAGCTTGCAAAGAACTTGCAGTCGGAGATGCAAATGTGGTTTCTACAGTTTGTTGAGAAAGCCATGGATGCTGGTTTTCGGGTGTTCGGAGAATGCGCTGCAGATGGTGTTAAGTTACCTCTAGACTGTGGCTCCATTGCAGCTGTCTTGTCACAGTTGAAGCGAGTTAATGAGTGGTTGGATCGAGCCGTATCCAAAAGGGATGATCTACTGAATGAAAAGGTTGATCGGCTCAAGAGAAAGATCTATGGCTTTGTTATTCAACATGTTGGGACGACATTTGACAATTCCTCACCTCTTGCTTCATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

560

Amino Acids

60.42

Weight (kDa)

9.74

Isoelectric Point (pI)

60.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6857 PF21647 268 - 552 1.8e-97 Domain of unknown function (DUF6857)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011282)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1282
Acc36I ACCTGC 2 cut(s) 1027, 1282
Acc65I GGTACC 1 cut(s) 390
AccB1I GGYRCC 2 cut(s) 298, 390
AccB7I CCANNNNNTGG 1 cut(s) 845
AccII CGCG 1 cut(s) 337
AclWI GGATC 6 cut(s) 36, 168, 251, 264, 806, 1557
AcoI YGGCCR 5 cut(s) 164, 174, 192, 234, 267
AcsI RAATTY 2 cut(s) 133, 531
AcuI CTGAAG 2 cut(s) 198, 1125
AcyI GRCGYC 2 cut(s) 299, 425
AfaI GTAC 2 cut(s) 240, 392
AfiI CCNNNNNNNGG 3 cut(s) 144, 204, 845
AflIII ACRYGT 1 cut(s) 1633
AgsI TTSAA 6 cut(s) 1041, 1163, 1251, 1291, 1528, 1631
AhdI GACNNNNNGTC 1 cut(s) 595
AjnI CCWGG 1 cut(s) 457
Alw26I GTCTC 8 cut(s) 160, 297, 679, 856, 957, 1198, 1227, 1355
AlwI GGATC 6 cut(s) 36, 168, 251, 264, 806, 1557
AoxI GGCC 5 cut(s) 164, 174, 192, 234, 267
ApoI RAATTY 2 cut(s) 133, 531
Asp700I GAANNNNTTC 1 cut(s) 445
Asp718I GGTACC 1 cut(s) 390
AspLEI GCGC 3 cut(s) 301, 337, 1466
AspS9I GGNCC 1 cut(s) 766
AsuC2I CCSGG 1 cut(s) 764
AsuHPI GGTGA 2 cut(s) 66, 1653
AsuII TTCGAA 1 cut(s) 536
AsuNHI GCTAGC 1 cut(s) 743
AvaII GGWCC 1 cut(s) 766
BamHI GGATCC 1 cut(s) 256
BanI GGYRCC 2 cut(s) 298, 390
BanII GRGCYC 1 cut(s) 369
BccI CCATC 6 cut(s) 268, 322, 579, 821, 839, 1466
BceAI ACGGC 7 cut(s) 23, 76, 221, 286, 367, 385, 1541
BcgI CGANNNNNNTGC 6 cut(s) 361, 395, 584, 618, 969, 1003
BciT130I CCWGG 1 cut(s) 459
BciVI GTATCC 1 cut(s) 1570
BcnI CCSGG 1 cut(s) 764
BcoDI GTCTC 8 cut(s) 160, 297, 679, 856, 957, 1198, 1227, 1355
BfaI CTAG 4 cut(s) 744, 929, 1076, 1490
BfmI CTRYAG 5 cut(s) 855, 915, 1235, 1412, 1467
BfoI RGCGCY 1 cut(s) 302
BfuAI ACCTGC 2 cut(s) 1027, 1282
BfuI GTATCC 1 cut(s) 1570
BglI GCCNNNNNGGC 1 cut(s) 412
BglII AGATCT 1 cut(s) 1611
Bme1390I CCNGG 2 cut(s) 459, 764
Bme18I GGWCC 1 cut(s) 766
BmeRI GACNNNNNGTC 1 cut(s) 595
BmgT120I GGNCC 1 cut(s) 766
BmiI GGNNCC 7 cut(s) 258, 300, 318, 366, 392, 1010, 1501
BmrFI CCNGG 2 cut(s) 459, 764
BmsI GCATC 3 cut(s) 688, 1386, 1426
BmtI GCTAGC 1 cut(s) 747
BpmI CTGGAG 1 cut(s) 441
Bpu10I CCTNAGC 2 cut(s) 360, 486
Bpu14I TTCGAA 1 cut(s) 536
BpuEI CTTGAG 1 cut(s) 1586
BpuMI CCSGG 1 cut(s) 764
BsaBI GATNNNNATC 1 cut(s) 184
BsaHI GRCGYC 2 cut(s) 299, 425
BsaI GGTCTC 1 cut(s) 160
BsaJI CCNNGG 4 cut(s) 458, 762, 1170, 1431
BsaWI WCCGGW 1 cut(s) 643
BsaXI ACNNNNNCTCC 4 cut(s) 114, 144, 1484, 1514
Bsc4I CCNNNNNNNGG 3 cut(s) 144, 204, 845
Bse118I RCCGGY 3 cut(s) 166, 265, 393
Bse1I ACTGG 1 cut(s) 1030
Bse3DI GCAATG 1 cut(s) 1503
Bse8I GATNNNNATC 1 cut(s) 184
BseBI CCWGG 1 cut(s) 459
BseDI CCNNGG 4 cut(s) 458, 762, 1170, 1431
BseGI GGATG 4 cut(s) 590, 652, 1441, 1576
BseJI GATNNNNATC 1 cut(s) 184
BseLI CCNNNNNNNGG 3 cut(s) 144, 204, 845
BseMI GCAATG 1 cut(s) 1503
BseMII CTCAG 1 cut(s) 683
BseNI ACTGG 1 cut(s) 1030
BseRI GAGGAG 2 cut(s) 478, 947
BseX3I CGGCCG 2 cut(s) 164, 267
BsgI GTGCAG 1 cut(s) 629
Bsh1236I CGCG 1 cut(s) 337
Bsh1285I CGRYCG 2 cut(s) 167, 270
BshFI GGCC 5 cut(s) 166, 176, 194, 236, 269
BshNI GGYRCC 2 cut(s) 298, 390
BsiEI CGRYCG 2 cut(s) 167, 270
BslFI GGGAC 2 cut(s) 602, 1654
BslI CCNNNNNNNGG 3 cut(s) 144, 204, 845
BsmAI GTCTC 8 cut(s) 160, 297, 679, 856, 957, 1198, 1227, 1355
BsmBI CGTCTC 3 cut(s) 297, 679, 1355
BsmFI GGGAC 2 cut(s) 602, 1654
BsmI GAATGC 1 cut(s) 1466
BsnI GGCC 5 cut(s) 166, 176, 194, 236, 269
Bso31I GGTCTC 1 cut(s) 160
Bsp119I TTCGAA 1 cut(s) 536
Bsp1286I GDGCHC 1 cut(s) 369
Bsp19I CCATGG 1 cut(s) 1431
BspANI GGCC 5 cut(s) 166, 176, 194, 236, 269
BspCNI CTCAG 1 cut(s) 682
BspFNI CGCG 1 cut(s) 337
BspHI TCATGA 2 cut(s) 808, 1216
BspLI GGNNCC 7 cut(s) 258, 300, 318, 366, 392, 1010, 1501
BspMAI CTGCAG 4 cut(s) 859, 919, 1239, 1471
BspMI ACCTGC 2 cut(s) 1027, 1282
BspOI GCTAGC 1 cut(s) 747
BspPI GGATC 6 cut(s) 36, 168, 251, 264, 806, 1557
BspQI GCTCTTC 1 cut(s) 436
BspT104I TTCGAA 1 cut(s) 536
BspT107I GGYRCC 2 cut(s) 298, 390
BspTNI GGTCTC 1 cut(s) 160
BsrDI GCAATG 1 cut(s) 1503
BsrFI RCCGGY 3 cut(s) 166, 265, 393
BsrI ACTGG 1 cut(s) 1030
BssAI RCCGGY 3 cut(s) 166, 265, 393
BssECI CCNNGG 4 cut(s) 458, 762, 1170, 1431
BssNI GRCGYC 2 cut(s) 299, 425
BssT1I CCWWGG 2 cut(s) 1170, 1431
Bst2UI CCWGG 1 cut(s) 459
Bst4CI ACNGT 5 cut(s) 805, 1366, 1416, 1496, 1524
Bst6I CTCTTC 3 cut(s) 336, 436, 1203
BstACI GRCGYC 2 cut(s) 299, 425
BstAPI GCANNNNNTGC 2 cut(s) 863, 905
BstBI TTCGAA 1 cut(s) 536
BstC8I GCNNGC 8 cut(s) 36, 267, 423, 603, 654, 745, 1090, 1374
BstDEI CTNAG 4 cut(s) 360, 486, 669, 1202
BstDSI CCRYGG 1 cut(s) 1431
BstF5I GGATG 4 cut(s) 590, 652, 1441, 1576
BstFNI CGCG 1 cut(s) 337
BstH2I RGCGCY 1 cut(s) 302
BstHHI GCGC 3 cut(s) 301, 337, 1466
BstMAI GTCTC 8 cut(s) 160, 297, 679, 856, 957, 1198, 1227, 1355
BstMCI CGRYCG 2 cut(s) 167, 270
BstNI CCWGG 1 cut(s) 459
BstNSI RCATGY 2 cut(s) 976, 1637
BstSCI CCNGG 2 cut(s) 457, 762
BstSFI CTRYAG 5 cut(s) 855, 915, 1235, 1412, 1467
BstUI CGCG 1 cut(s) 337
BstX2I RGATCY 2 cut(s) 256, 1611
BstYI RGATCY 2 cut(s) 256, 1611
BstZI CGGCCG 2 cut(s) 164, 267
BsuI GTATCC 1 cut(s) 1570
BsuRI GGCC 5 cut(s) 166, 176, 194, 236, 269
BtgI CCRYGG 1 cut(s) 1431
BtgZI GCGATG 1 cut(s) 246
BtsCI GGATG 4 cut(s) 590, 652, 1441, 1576
BtsIMutI CAGTG 1 cut(s) 801
BveI ACCTGC 2 cut(s) 1027, 1282
Cac8I GCNNGC 8 cut(s) 36, 267, 423, 603, 654, 745, 1090, 1374
CciI TCATGA 2 cut(s) 808, 1216
CfoI GCGC 3 cut(s) 301, 337, 1466
Cfr10I RCCGGY 3 cut(s) 166, 265, 393
Cfr13I GGNCC 1 cut(s) 766
CseI GACGC 1 cut(s) 414
Csp6I GTAC 2 cut(s) 239, 391
CviAII CATG 7 cut(s) 752, 809, 973, 1217, 1325, 1432, 1634
CviQI GTAC 2 cut(s) 239, 391
DdeI CTNAG 4 cut(s) 360, 486, 669, 1202
DinI GGCGCC 1 cut(s) 300
DriI GACNNNNNGTC 1 cut(s) 595
EaeI YGGCCR 5 cut(s) 164, 174, 192, 234, 267
EagI CGGCCG 2 cut(s) 164, 267
Eam1104I CTCTTC 3 cut(s) 336, 436, 1203
Eam1105I GACNNNNNGTC 1 cut(s) 595
EarI CTCTTC 3 cut(s) 336, 436, 1203
EciI GGCGGA 2 cut(s) 263, 430
EclXI CGGCCG 2 cut(s) 164, 267
Eco130I CCWWGG 2 cut(s) 1170, 1431
Eco24I GRGCYC 1 cut(s) 369
Eco31I GGTCTC 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 766
Eco52I CGGCCG 2 cut(s) 164, 267
Eco57I CTGAAG 2 cut(s) 198, 1125
EcoRI GAATTC 1 cut(s) 133
EcoRII CCWGG 1 cut(s) 457
EcoT14I CCWWGG 2 cut(s) 1170, 1431
EcoT38I GRGCYC 1 cut(s) 369
EgeI GGCGCC 1 cut(s) 300
EheI GGCGCC 1 cut(s) 300
ErhI CCWWGG 2 cut(s) 1170, 1431
Esp3I CGTCTC 3 cut(s) 297, 679, 1355
FaeI CATG 7 cut(s) 755, 812, 976, 1220, 1328, 1435, 1637
FaqI GGGAC 2 cut(s) 602, 1654
FatI CATG 7 cut(s) 751, 808, 972, 1216, 1324, 1431, 1633
FauI CCCGC 2 cut(s) 211, 550
FokI GGATG 4 cut(s) 597, 659, 1448, 1583
FriOI GRGCYC 1 cut(s) 369
FspBI CTAG 4 cut(s) 744, 929, 1076, 1490
GlaI GCGC 3 cut(s) 300, 336, 1465
GsuI CTGGAG 1 cut(s) 441
HaeII RGCGCY 1 cut(s) 302
HaeIII GGCC 5 cut(s) 166, 176, 194, 236, 269
HgaI GACGC 1 cut(s) 414
HhaI GCGC 3 cut(s) 301, 337, 1466
Hin1I GRCGYC 2 cut(s) 299, 425
Hin1II CATG 7 cut(s) 755, 812, 976, 1220, 1328, 1435, 1637
Hin6I GCGC 3 cut(s) 299, 335, 1464
HinP1I GCGC 3 cut(s) 299, 335, 1464
HphI GGTGA 2 cut(s) 66, 1653
Hpy166II GTNNAC 1 cut(s) 993
Hpy188I TCNGA 9 cut(s) 139, 160, 321, 351, 547, 579, 1105, 1393, 1457
Hpy188III TCNNGA 9 cut(s) 43, 61, 684, 809, 1076, 1217, 1490, 1603, 1677
Hpy8I GTNNAC 1 cut(s) 993
Hpy99I CGWCG 7 cut(s) 143, 292, 307, 388, 406, 430, 596
HpyAV CCTTC 7 cut(s) 58, 145, 346, 574, 733, 889, 1336
HpyCH4III ACNGT 5 cut(s) 805, 1366, 1416, 1496, 1524
HpyF3I CTNAG 4 cut(s) 360, 486, 669, 1202
Hsp92I GRCGYC 2 cut(s) 299, 425
Hsp92II CATG 7 cut(s) 755, 812, 976, 1220, 1328, 1435, 1637
HspAI GCGC 3 cut(s) 299, 335, 1464
KasI GGCGCC 1 cut(s) 298
KpnI GGTACC 1 cut(s) 394
KroI GCCGGC 1 cut(s) 265
KroNI GCCGGC 1 cut(s) 267
LguI GCTCTTC 1 cut(s) 436
LmnI GCTCC 3 cut(s) 364, 482, 1505
LweI GCATC 3 cut(s) 688, 1386, 1426
MaeI CTAG 4 cut(s) 744, 929, 1076, 1490
MaeIII GTNAC 2 cut(s) 1482, 1518
MfeI CAATTG 4 cut(s) 408, 519, 552, 1083
MflI RGATCY 2 cut(s) 256, 1611
MhlI GDGCHC 1 cut(s) 369
Mly113I GGCGCC 1 cut(s) 299
MlyI GAGTC 5 cut(s) 485, 605, 858, 959, 1229
MmeI TCCRAC 4 cut(s) 162, 1151, 1371, 1527
MroNI GCCGGC 1 cut(s) 265
MroXI GAANNNNTTC 1 cut(s) 445
MseI TTAA 6 cut(s) 114, 692, 968, 1059, 1479, 1536
MspA1I CMGCKG 4 cut(s) 82, 218, 914, 1511
MspR9I CCNGG 2 cut(s) 459, 764
MunI CAATTG 4 cut(s) 408, 519, 552, 1083
Mva1269I GAATGC 1 cut(s) 1466
MvaI CCWGG 1 cut(s) 459
MvnI CGCG 1 cut(s) 337
NaeI GCCGGC 1 cut(s) 267
NarI GGCGCC 1 cut(s) 299
NciI CCSGG 1 cut(s) 764
NcoI CCATGG 1 cut(s) 1431
NgoMIV GCCGGC 1 cut(s) 265
NheI GCTAGC 1 cut(s) 743
NlaIII CATG 7 cut(s) 755, 812, 976, 1220, 1328, 1435, 1637
NlaIV GGNNCC 7 cut(s) 258, 300, 318, 366, 392, 1010, 1501
NmuCI GTSAC 1 cut(s) 1518
NspI RCATGY 2 cut(s) 976, 1637
NspV TTCGAA 1 cut(s) 536
PagI TCATGA 2 cut(s) 808, 1216
PaqCI CACCTGC 1 cut(s) 1282
PciI ACATGT 1 cut(s) 1633
PciSI GCTCTTC 1 cut(s) 436
PctI GAATGC 1 cut(s) 1466
PdiI GCCGGC 1 cut(s) 267
PdmI GAANNNNTTC 1 cut(s) 445
PfeI GAWTC 5 cut(s) 180, 346, 433, 758, 1079
PflMI CCANNNNNTGG 1 cut(s) 845
PleI GAGTC 5 cut(s) 485, 604, 857, 958, 1228
PluTI GGCGCC 1 cut(s) 302
PpsI GAGTC 5 cut(s) 485, 604, 857, 958, 1228
PscI ACATGT 1 cut(s) 1633
Psp6I CCWGG 1 cut(s) 457
PspGI CCWGG 1 cut(s) 457
PspN4I GGNNCC 7 cut(s) 258, 300, 318, 366, 392, 1010, 1501
PspPI GGNCC 1 cut(s) 766
PstI CTGCAG 4 cut(s) 859, 919, 1239, 1471
PsuI RGATCY 2 cut(s) 256, 1611
PvuII CAGCTG 2 cut(s) 914, 1511
RsaI GTAC 2 cut(s) 240, 392
RsaNI GTAC 2 cut(s) 239, 391
SapI GCTCTTC 1 cut(s) 436
SaqAI TTAA 6 cut(s) 114, 692, 968, 1059, 1479, 1536
Sau96I GGNCC 1 cut(s) 766
SchI GAGTC 5 cut(s) 485, 605, 858, 959, 1229
ScrFI CCNGG 2 cut(s) 459, 764
SduI GDGCHC 1 cut(s) 369
SfaNI GCATC 3 cut(s) 688, 1386, 1426
SfcI CTRYAG 5 cut(s) 855, 915, 1235, 1412, 1467
SfoI GGCGCC 1 cut(s) 300
SfuI TTCGAA 1 cut(s) 536
SinI GGWCC 1 cut(s) 766
SmlI CTYRAG 1 cut(s) 1601
SmoI CTYRAG 1 cut(s) 1601
SspDI GGCGCC 1 cut(s) 298
SspMI CTAG 4 cut(s) 744, 929, 1076, 1490
StyD4I CCNGG 2 cut(s) 457, 762
StyI CCWWGG 2 cut(s) 1170, 1431
TaaI ACNGT 5 cut(s) 805, 1366, 1416, 1496, 1524
TaqI TCGA 9 cut(s) 60, 305, 371, 386, 536, 683, 725, 737, 1552
TauI GCSGC 4 cut(s) 85, 88, 176, 1312
TfiI GAWTC 5 cut(s) 180, 346, 433, 758, 1079
Tru1I TTAA 6 cut(s) 114, 692, 968, 1059, 1479, 1536
Tru9I TTAA 6 cut(s) 114, 692, 968, 1059, 1479, 1536
TscAI CASTG 1 cut(s) 808
TseFI GTSAC 1 cut(s) 1518
Tsp45I GTSAC 1 cut(s) 1518
TspDTI ATGAA 5 cut(s) 768, 797, 825, 1599, 1662
TspGWI ACGGA 2 cut(s) 62, 962
TspRI CASTG 1 cut(s) 808
Van91I CCANNNNNTGG 1 cut(s) 845
VpaK11BI GGWCC 1 cut(s) 766
XapI RAATTY 2 cut(s) 133, 531
XbaI TCTAGA 2 cut(s) 1075, 1489
XceI RCATGY 2 cut(s) 976, 1637
XmnI GAANNNNTTC 1 cut(s) 445
XspI CTAG 4 cut(s) 744, 929, 1076, 1490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.