Rh2AG059200

Plant protein of unknown function (DUF936)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
4763319 .. 4766268
2950 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG059200.1

Sequence Viewer

Length: 1620 bp
ATGGCGTCGCCCACTCCCGGAATCCTCCTCCGCCTCCTCCAGTCCATGAACTCCGCCACCAAAGTCACCGGCGACCACCGCTCCGCCCTCCTCCAAGTCATCGGCATCGTCCCCGCCCTCGCCGGCTCCGACGACCTCTGGCCCAACCAAGGCTTCTACGTCCAGCTCTCCGACTCCCTCAACTCCACCTACGTTTCCCTCTCCGAGAAAGACACCGATCTCATCCTCGCCAACCGCCTCCAGCTCGGCCAGTTCGTCTACGTCGACCGCTTCGATTTCGACTCTCCGGTGCCACGCGTCTCCGGAATCCGCCCCATCGCTGGCCGCCACCCCTTCGTCGGTTCGCCGGAGCCTCTGGTGGCGCAGATCTCGGCGTCTAAGAGGGAGTTCGTGATCAAGCCGGTGTCGGATTCCGACCAGTCCGCCGATTTCATGGCGATTTATCTGTCCAAGAAGCAGGATCAACCGGCCGTCAGGACGGAGGCGAAGATTGAGAAGGGAAGATCGCCGCAGCGGCGGCAGCCGTTTGCGAATAGAGAGAATGTTAATGTGGGAGGGAATGTGAATGCCGACGAGGCGAAGAAGGTCTCGGATCGGCCGGTGGCGGCGAGATTCTCATCTCCGGCCACCGCAAAGAGGTCTGCTTCAGCGGGGAAGAAGAATGTGGCCGTACCTCCGGCGGAGAGGGATCCATCGCCGGCCGGAAAAGGAAAGAGATCGTCGTCTCCTGCGCCGTCGAAATGTGTGGTTCCGAGCTTGATGGTGGCGCGTGAAGAGAATCGGAAGGTGGCTAAGGAGCCCTCGATTATTGTGCCGTCGAGGTACCGGCAGCCGTCGCCAATTGGGCGGAGGCAGGCGTCGCCGAATCCCCGAAGAGCTTCGATTTCTCCGGGGAGGAGATTGTCTGTTGGGGGAGCGAAGGACTCTGCTGCAAGGAAGAAAATGGCTACAATTGTTGCCGGAATTTCGAAGATTTCGGATTCAATTGCGGGGTCTGGTAAGAATAACCGGAAGGGATGGGAAGACGAGTCGCCTGCGGTGCAGCAAAAGGAGAAGCCTGTGTCAAAGAACAAACCGGATGTGCAAGCAATTTTGCGAACTCAGGCTGCCCTTTCGAGAAGATTAAGTGATGCAAAAACAACAAGTGATGATTGTTCAAGTGTGAAATCGAAGGCTAGCTCACATGAAGATTCCCCGGTCCAAGAGAAGCCAAGCTATGCAGCTCTGGGGATCACTGTTCATGAAAGGAAATGGACTGATGGTAGTGTTCGATTAGATGGAGTCTCTGCAGACCTTGCAAGACTTGGAAAGGAAGCTATGCAAAGGAAGGCACTTGCTGCCACAGCTGCAGCCGAAGCACTAGAGGAGGCGATTGCAACGGAGTCTCTTGTTAGGAAATTAAGGTATTACGAATTCATGTATGCTTCGATAGTTAATATCACATATTGTCTTCTGTTGTGCGTTGTTGAATTAATGAACATATTGCATTTACTGAATGATCATACCATTATTAGTGACTGGTGTGAACAAAAATTTTACTTTCCCTTTTCCTTTCCATCTCAGCATGTTTGCAGAACTGTCGTCCACATCAAAGGTTGGGAACCCTTTACCTGCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

539

Amino Acids

58.81

Weight (kDa)

9.69

Isoelectric Point (pI)

63.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF936 PF06075 5 - 121 2e-53 Plant protein of unknown function (DUF936)
DUF6857 PF21647 412 - 470 3.9e-20 Domain of unknown function (DUF6857)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011282)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 822
AccB1I GGYRCC 2 cut(s) 289, 822
AccBSI CCGCTC 1 cut(s) 81
AccI GTMKAC 2 cut(s) 258, 264
AccII CGCG 2 cut(s) 297, 769
AccIII TCCGGA 1 cut(s) 302
AclWI GGATC 5 cut(s) 468, 600, 683, 696, 1238
AcoI YGGCCR 7 cut(s) 247, 322, 468, 596, 624, 666, 699
AcsI RAATTY 3 cut(s) 963, 1412, 1532
AcuI CTGAAG 1 cut(s) 630
AcyI GRCGYC 3 cut(s) 5, 374, 857
AfaI GTAC 2 cut(s) 672, 824
AfiI CCNNNNNNNGG 5 cut(s) 17, 149, 320, 338, 636
AflIII ACRYGT 1 cut(s) 295
AgsI TTSAA 3 cut(s) 984, 1158, 1469
AjuI GAANNNNNNNTTGG 2 cut(s) 137, 169
AluBI AGCT 9 cut(s) 166, 244, 756, 878, 1179, 1215, 1223, 1316, 1346
AluI AGCT 9 cut(s) 166, 244, 756, 878, 1179, 1215, 1223, 1316, 1346
Alw26I GTCTC 5 cut(s) 304, 592, 729, 1288, 1389
AlwI GGATC 5 cut(s) 468, 600, 683, 696, 1238
Aor13HI TCCGGA 1 cut(s) 302
AoxI GGCC 8 cut(s) 140, 247, 322, 468, 596, 624, 666, 699
ApoI RAATTY 3 cut(s) 963, 1412, 1532
AseI ATTAAT 1 cut(s) 1472
Asp700I GAANNNNTTC 1 cut(s) 877
Asp718I GGTACC 1 cut(s) 822
AspLEI GCGC 3 cut(s) 364, 733, 769
AspS9I GGNCC 2 cut(s) 141, 1198
AsuC2I CCSGG 3 cut(s) 18, 891, 1196
AsuHPI GGTGA 1 cut(s) 58
AsuII TTCGAA 1 cut(s) 968
AsuNHI GCTAGC 1 cut(s) 1175
AvaII GGWCC 1 cut(s) 1198
BamHI GGATCC 1 cut(s) 688
BanI GGYRCC 2 cut(s) 289, 822
BanII GRGCYC 1 cut(s) 801
BbsI GAAGAC 2 cut(s) 1029, 1442
BccI CCATC 7 cut(s) 323, 700, 754, 1011, 1253, 1271, 1564
BceAI ACGGC 6 cut(s) 455, 508, 653, 718, 799, 817
BcgI CGANNNNNNTGC 6 cut(s) 793, 827, 1016, 1050, 1561, 1595
BclI TGATCA 2 cut(s) 393, 1498
BcnI CCSGG 3 cut(s) 18, 891, 1196
BcoDI GTCTC 5 cut(s) 304, 592, 729, 1288, 1389
BfaI CTAG 2 cut(s) 1176, 1361
BfmI CTRYAG 2 cut(s) 1287, 1347
BglI GCCNNNNNGGC 3 cut(s) 514, 575, 844
BglII AGATCT 1 cut(s) 366
Bme1390I CCNGG 3 cut(s) 18, 891, 1196
Bme18I GGWCC 1 cut(s) 1198
BmgT120I GGNCC 2 cut(s) 141, 1198
BmiI GGNNCC 8 cut(s) 127, 291, 351, 690, 750, 798, 824, 1602
BmrFI CCNGG 3 cut(s) 18, 891, 1196
BmsI GCATC 2 cut(s) 114, 1120
BmtI GCTAGC 1 cut(s) 1179
BpiI GAAGAC 2 cut(s) 1029, 1442
BpmI CTGGAG 2 cut(s) 23, 224
Bpu10I CCTNAGC 1 cut(s) 792
Bpu14I TTCGAA 1 cut(s) 968
BpuMI CCSGG 3 cut(s) 18, 891, 1196
BsaBI GATNNNNATC 1 cut(s) 616
BsaHI GRCGYC 3 cut(s) 5, 374, 857
BsaI GGTCTC 1 cut(s) 592
BsaJI CCNNGG 3 cut(s) 148, 890, 1194
BsaWI WCCGGW 4 cut(s) 286, 302, 1008, 1075
BsaXI ACNNNNNCTCC 4 cut(s) 65, 95, 546, 576
Bsc4I CCNNNNNNNGG 5 cut(s) 17, 149, 320, 338, 636
Bse118I RCCGGY 7 cut(s) 68, 122, 400, 466, 598, 697, 825
Bse1I ACTGG 4 cut(s) 40, 250, 418, 1523
Bse8I GATNNNNATC 1 cut(s) 616
BseAI TCCGGA 1 cut(s) 302
BseDI CCNNGG 3 cut(s) 148, 890, 1194
BseGI GGATG 3 cut(s) 222, 1022, 1084
BseJI GATNNNNATC 1 cut(s) 616
BseLI CCNNNNNNNGG 5 cut(s) 17, 149, 320, 338, 636
BseMII CTCAG 2 cut(s) 1115, 1574
BseNI ACTGG 4 cut(s) 40, 250, 418, 1523
BseRI GAGGAG 5 cut(s) 17, 26, 80, 910, 1379
BseX3I CGGCCG 3 cut(s) 468, 596, 699
BsgI GTGCAG 1 cut(s) 1061
Bsh1236I CGCG 2 cut(s) 297, 769
Bsh1285I CGRYCG 4 cut(s) 268, 471, 599, 702
BshFI GGCC 8 cut(s) 142, 249, 324, 470, 598, 626, 668, 701
BshNI GGYRCC 2 cut(s) 289, 822
BsiEI CGRYCG 4 cut(s) 268, 471, 599, 702
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 5 cut(s) 17, 149, 320, 338, 636
BsmAI GTCTC 5 cut(s) 304, 592, 729, 1288, 1389
BsmBI CGTCTC 2 cut(s) 304, 729
BsmFI GGGAC 1 cut(s) 95
BsmI GAATGC 1 cut(s) 571
BsnI GGCC 8 cut(s) 142, 249, 324, 470, 598, 626, 668, 701
Bso31I GGTCTC 1 cut(s) 592
Bsp119I TTCGAA 1 cut(s) 968
Bsp1286I GDGCHC 1 cut(s) 801
Bsp13I TCCGGA 1 cut(s) 302
BspANI GGCC 8 cut(s) 142, 249, 324, 470, 598, 626, 668, 701
BspCNI CTCAG 2 cut(s) 1114, 1573
BspEI TCCGGA 1 cut(s) 302
BspFNI CGCG 2 cut(s) 297, 769
BspHI TCATGA 1 cut(s) 1240
BspLI GGNNCC 8 cut(s) 127, 291, 351, 690, 750, 798, 824, 1602
BspMAI CTGCAG 2 cut(s) 1291, 1351
BspOI GCTAGC 1 cut(s) 1179
BspPI GGATC 5 cut(s) 468, 600, 683, 696, 1238
BspQI GCTCTTC 1 cut(s) 868
BspT104I TTCGAA 1 cut(s) 968
BspT107I GGYRCC 2 cut(s) 289, 822
BspTNI GGTCTC 1 cut(s) 592
BsrBI CCGCTC 1 cut(s) 81
BsrFI RCCGGY 7 cut(s) 68, 122, 400, 466, 598, 697, 825
BsrI ACTGG 4 cut(s) 40, 250, 418, 1523
BssAI RCCGGY 7 cut(s) 68, 122, 400, 466, 598, 697, 825
BssECI CCNNGG 3 cut(s) 148, 890, 1194
BssNI GRCGYC 3 cut(s) 5, 374, 857
BssT1I CCWWGG 1 cut(s) 148
Bst4CI ACNGT 2 cut(s) 1237, 1579
Bst6I CTCTTC 2 cut(s) 768, 868
BstACI GRCGYC 3 cut(s) 5, 374, 857
BstAPI GCANNNNNTGC 2 cut(s) 1295, 1337
BstBI TTCGAA 1 cut(s) 968
BstC8I GCNNGC 7 cut(s) 124, 322, 699, 855, 1035, 1086, 1177
BstDEI CTNAG 4 cut(s) 378, 792, 1101, 1560
BstF5I GGATG 3 cut(s) 222, 1022, 1084
BstFNI CGCG 2 cut(s) 297, 769
BstHHI GCGC 3 cut(s) 364, 733, 769
BstMAI GTCTC 5 cut(s) 304, 592, 729, 1288, 1389
BstMCI CGRYCG 4 cut(s) 268, 471, 599, 702
BstNSI RCATGY 1 cut(s) 1568
BstSCI CCNGG 3 cut(s) 16, 889, 1194
BstSFI CTRYAG 2 cut(s) 1287, 1347
BstUI CGCG 2 cut(s) 297, 769
BstV2I GAAGAC 2 cut(s) 1029, 1442
BstX2I RGATCY 2 cut(s) 366, 688
BstYI RGATCY 2 cut(s) 366, 688
BstZI CGGCCG 3 cut(s) 468, 596, 699
BsuRI GGCC 8 cut(s) 142, 249, 324, 470, 598, 626, 668, 701
BtgZI GCGATG 2 cut(s) 301, 678
BtsCI GGATG 3 cut(s) 222, 1022, 1084
BtsIMutI CAGTG 1 cut(s) 1233
Cac8I GCNNGC 7 cut(s) 124, 322, 699, 855, 1035, 1086, 1177
CciI TCATGA 1 cut(s) 1240
CfoI GCGC 3 cut(s) 364, 733, 769
Cfr10I RCCGGY 7 cut(s) 68, 122, 400, 466, 598, 697, 825
Cfr13I GGNCC 2 cut(s) 141, 1198
CseI GACGC 3 cut(s) 286, 363, 846
Csp6I GTAC 2 cut(s) 671, 823
CviAII CATG 6 cut(s) 46, 433, 1184, 1241, 1417, 1565
CviQI GTAC 2 cut(s) 671, 823
DdeI CTNAG 4 cut(s) 378, 792, 1101, 1560
EaeI YGGCCR 7 cut(s) 247, 322, 468, 596, 624, 666, 699
EagI CGGCCG 3 cut(s) 468, 596, 699
Eam1104I CTCTTC 2 cut(s) 768, 868
EarI CTCTTC 2 cut(s) 768, 868
EciI GGCGGA 7 cut(s) 20, 43, 73, 299, 412, 695, 862
EclXI CGGCCG 3 cut(s) 468, 596, 699
Eco130I CCWWGG 1 cut(s) 148
Eco24I GRGCYC 1 cut(s) 801
Eco31I GGTCTC 1 cut(s) 592
Eco47I GGWCC 1 cut(s) 1198
Eco52I CGGCCG 3 cut(s) 468, 596, 699
Eco57I CTGAAG 1 cut(s) 630
EcoRI GAATTC 1 cut(s) 1412
EcoT14I CCWWGG 1 cut(s) 148
EcoT38I GRGCYC 1 cut(s) 801
ErhI CCWWGG 1 cut(s) 148
Esp3I CGTCTC 2 cut(s) 304, 729
FaeI CATG 6 cut(s) 49, 436, 1187, 1244, 1420, 1568
FaqI GGGAC 1 cut(s) 95
FatI CATG 6 cut(s) 45, 432, 1183, 1240, 1416, 1564
FauI CCCGC 3 cut(s) 121, 643, 982
FbaI TGATCA 2 cut(s) 393, 1498
FblI GTMKAC 2 cut(s) 258, 264
FokI GGATG 3 cut(s) 209, 1029, 1091
FriOI GRGCYC 1 cut(s) 801
FspBI CTAG 2 cut(s) 1176, 1361
GlaI GCGC 3 cut(s) 363, 732, 768
GsuI CTGGAG 2 cut(s) 23, 224
HaeIII GGCC 8 cut(s) 142, 249, 324, 470, 598, 626, 668, 701
HgaI GACGC 3 cut(s) 286, 363, 846
HhaI GCGC 3 cut(s) 364, 733, 769
Hin1I GRCGYC 3 cut(s) 5, 374, 857
Hin1II CATG 6 cut(s) 49, 436, 1187, 1244, 1420, 1568
Hin6I GCGC 3 cut(s) 362, 731, 767
HinP1I GCGC 3 cut(s) 362, 731, 767
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 4 cut(s) 259, 265, 1526, 1585
Hpy188I TCNGA 9 cut(s) 130, 172, 205, 409, 415, 592, 753, 783, 979
Hpy188III TCNNGA 5 cut(s) 303, 391, 475, 1116, 1241
Hpy8I GTNNAC 4 cut(s) 259, 265, 1526, 1585
HpyAV CCTTC 8 cut(s) 343, 490, 577, 778, 913, 1006, 1165, 1321
HpyCH4III ACNGT 2 cut(s) 1237, 1579
HpyCH4IV ACGT 3 cut(s) 159, 192, 261
HpyF3I CTNAG 4 cut(s) 378, 792, 1101, 1560
HpySE526I ACGT 3 cut(s) 159, 192, 261
Hsp92I GRCGYC 3 cut(s) 5, 374, 857
Hsp92II CATG 6 cut(s) 49, 436, 1187, 1244, 1420, 1568
HspAI GCGC 3 cut(s) 362, 731, 767
Kpn2I TCCGGA 1 cut(s) 302
KpnI GGTACC 1 cut(s) 826
KroI GCCGGC 2 cut(s) 122, 697
KroNI GCCGGC 2 cut(s) 124, 699
Ksp22I TGATCA 2 cut(s) 393, 1498
LguI GCTCTTC 1 cut(s) 868
LmnI GCTCC 5 cut(s) 86, 131, 349, 796, 914
LweI GCATC 2 cut(s) 114, 1120
MaeI CTAG 2 cut(s) 1176, 1361
MaeII ACGT 3 cut(s) 159, 192, 261
MaeIII GTNAC 2 cut(s) 64, 1514
MbiI CCGCTC 1 cut(s) 81
MfeI CAATTG 3 cut(s) 840, 951, 984
MflI RGATCY 2 cut(s) 366, 688
MhlI GDGCHC 1 cut(s) 801
MluCI AATT 9 cut(s) 840, 951, 963, 984, 1089, 1397, 1412, 1469, 1532
MluI ACGCGT 1 cut(s) 295
MlyI GAGTC 6 cut(s) 167, 275, 917, 1037, 1290, 1391
MmeI TCCRAC 4 cut(s) 153, 195, 387, 438
MroI TCCGGA 1 cut(s) 302
MroNI GCCGGC 2 cut(s) 122, 697
MroXI GAANNNNTTC 1 cut(s) 877
MseI TTAA 5 cut(s) 546, 1124, 1400, 1434, 1472
MspA1I CMGCKG 3 cut(s) 514, 650, 1346
MspR9I CCNGG 3 cut(s) 18, 891, 1196
MunI CAATTG 3 cut(s) 840, 951, 984
Mva1269I GAATGC 1 cut(s) 571
MvnI CGCG 2 cut(s) 297, 769
NaeI GCCGGC 2 cut(s) 124, 699
NciI CCSGG 3 cut(s) 18, 891, 1196
NgoMIV GCCGGC 2 cut(s) 122, 697
NheI GCTAGC 1 cut(s) 1175
NlaIII CATG 6 cut(s) 49, 436, 1187, 1244, 1420, 1568
NlaIV GGNNCC 8 cut(s) 127, 291, 351, 690, 750, 798, 824, 1602
NmeAIII GCCGAG 2 cut(s) 225, 350
NmuCI GTSAC 2 cut(s) 64, 1514
NspI RCATGY 1 cut(s) 1568
NspV TTCGAA 1 cut(s) 968
PagI TCATGA 1 cut(s) 1240
PciSI GCTCTTC 1 cut(s) 868
PcsI WCGNNNNNNNCGW 4 cut(s) 126, 252, 261, 270
PctI GAATGC 1 cut(s) 571
PdiI GCCGGC 2 cut(s) 124, 699
PdmI GAANNNNTTC 1 cut(s) 877
PfeI GAWTC 8 cut(s) 21, 306, 410, 612, 778, 865, 980, 1190
PfoI TCCNGGA 1 cut(s) 16
PleI GAGTC 6 cut(s) 167, 275, 917, 1036, 1289, 1390
PpsI GAGTC 6 cut(s) 167, 275, 917, 1036, 1289, 1390
PshBI ATTAAT 1 cut(s) 1472
PspN4I GGNNCC 8 cut(s) 127, 291, 351, 690, 750, 798, 824, 1602
PspPI GGNCC 2 cut(s) 141, 1198
PstI CTGCAG 2 cut(s) 1291, 1351
PsuI RGATCY 2 cut(s) 366, 688
PvuII CAGCTG 1 cut(s) 1346
RsaI GTAC 2 cut(s) 672, 824
RsaNI GTAC 2 cut(s) 671, 823
SalI GTCGAC 1 cut(s) 263
SapI GCTCTTC 1 cut(s) 868
SaqAI TTAA 5 cut(s) 546, 1124, 1400, 1434, 1472
Sau96I GGNCC 2 cut(s) 141, 1198
SchI GAGTC 6 cut(s) 167, 275, 917, 1037, 1290, 1391
ScrFI CCNGG 3 cut(s) 18, 891, 1196
SduI GDGCHC 1 cut(s) 801
SfaNI GCATC 2 cut(s) 114, 1120
SfcI CTRYAG 2 cut(s) 1287, 1347
SfuI TTCGAA 1 cut(s) 968
SgrAI CRCCGGYG 1 cut(s) 68
SinI GGWCC 1 cut(s) 1198
Sse9I AATT 9 cut(s) 840, 951, 963, 984, 1089, 1397, 1412, 1469, 1532
SspMI CTAG 2 cut(s) 1176, 1361
StyD4I CCNGG 3 cut(s) 16, 889, 1194
StyI CCWWGG 1 cut(s) 148
TaaI ACNGT 2 cut(s) 1237, 1579
TaiI ACGT 3 cut(s) 162, 195, 264
TasI AATT 9 cut(s) 840, 951, 963, 984, 1089, 1397, 1412, 1469, 1532
TauI GCSGC 5 cut(s) 327, 511, 517, 520, 608
TfiI GAWTC 8 cut(s) 21, 306, 410, 612, 778, 865, 980, 1190
Tru1I TTAA 5 cut(s) 546, 1124, 1400, 1434, 1472
Tru9I TTAA 5 cut(s) 546, 1124, 1400, 1434, 1472
TscAI CASTG 1 cut(s) 1240
TseFI GTSAC 2 cut(s) 64, 1514
Tsp45I GTSAC 2 cut(s) 64, 1514
TspDTI ATGAA 7 cut(s) 62, 421, 1200, 1229, 1257, 1405, 1490
TspGWI ACGGA 2 cut(s) 494, 1394
TspRI CASTG 1 cut(s) 1240
VpaK11BI GGWCC 1 cut(s) 1198
VspI ATTAAT 1 cut(s) 1472
XapI RAATTY 3 cut(s) 963, 1412, 1532
XceI RCATGY 1 cut(s) 1568
XmiI GTMKAC 2 cut(s) 258, 264
XmnI GAANNNNTTC 1 cut(s) 877
XspI CTAG 2 cut(s) 1176, 1361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.