Rorug02G0013000

Plant protein of unknown function (DUF936)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0011282
Physical Location & Seq
Reverse (-)
1111571 .. 1113272
1702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0013000.1

Sequence Viewer

Length: 777 bp
ATGGAAGGTGAGTCAAGTTCTGATTGGACCCAGAAGGAGGAAGCTGCTAAGCTTCACATAGAAGAAATTCGGACTCAGAAATATTCTATTGGTAAAGACGAAGTTAACCCCTTGGGCAAAGATCTTCATCGAGCCCTGATAACCAACATCTCAAAAGGTGCCAACTTTTTGAGGGAACTCATCCTGAACGCTGAAGAGAATGAATACGAAGAAGGTGTAGTGCCACAGATGAAATTTGTGTTGACCAAGGAAGACATAACTGAGACTGGAGCACCAGCTACTCTGTTGGTTTTCAATAATGAAGTTGGCTTTTCCAGGGAGAACATGGATTCCATTTGCGGCATATTCCATTCTACAAAGATGGAAAAGAGACAGCGGAGGTTAATTGAAGAGAATGGCTCTTTTATAATTTCTGGTTTAGACGTTCTCGATGAAGCGGATTCAAAAGTGTATTTTTTGAGTTCACAGCCTTACATTTTCAGCAATGGATATCGTGTTAGATTCCAGGAAGAACCAGATCAAGATTGTGGTATTGGGTATATAGTTCCCCGGTGGGTGAGTGGACATCCTTCTCTTTCTAGCATATATGATGTGTATGGGCTCAGTAATGCCTACCCTGCAACCACAGTTATCCTTCCTCTAAAGCCTGAGATGGTTGAAGCCGTGAGAGAGCAATTGTCACAGTTGTGCCCAGAGATTATCCTGTTCTTATCGAAGTTAAAGCGACTATCTGTATGTGACTATGATTCTGAAATAGCTGATAGGGTTTCAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF936

Protein Analysis

258

Amino Acids

29.27

Weight (kDa)

4.83

Isoelectric Point (pI)

50.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011282)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13370
fragaria_vesca FvH4_1g05440 FvH4_1g05440
malus_domestica MD02G1062500.v1.1 MD15G1190300.v1.1 MD17G1097200.v1.1
prunus_persica Prupe.7G226800_v2.0.a1
pyrus_communis pycom02g04340 pycom15g17050
rosa_chinensis RchiOBHm_Chr2g0091101
rosa_laevigata RLG00000016180
rosa_multiflora Rmu_sc0004851.1_g000007 Rmu_sc0005171.1_g000002
rosa_roxburghii Rroxscaffold_2G00150540
rosa_rugosa Rorug02G0013000
rosa_samantha Rh2AG059200 Rh2BG057600 Rh2CG059500 Rh2DG058600
rosa_wichuraiana Rw2G005050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 407
AccB1I GGYRCC 1 cut(s) 158
AciI CCGC 3 cut(s) 339, 376, 437
AcsI RAATTY 2 cut(s) 66, 233
AcuI CTGAAG 1 cut(s) 213
AfiI CCNNNNNNNGG 1 cut(s) 37
AgsI TTSAA 5 cut(s) 295, 389, 444, 659, 771
AjnI CCWGG 2 cut(s) 314, 504
AleI CACNNNNGTG 1 cut(s) 685
AloI GAACNNNNNNTCC 2 cut(s) 314, 346
AluBI AGCT 4 cut(s) 44, 52, 278, 758
AluI AGCT 4 cut(s) 44, 52, 278, 758
Alw21I GWGCWC 1 cut(s) 274
Alw26I GTCTC 2 cut(s) 257, 364
ApeKI GCWGC 1 cut(s) 44
ApoI RAATTY 2 cut(s) 66, 233
Asp700I GAANNNNTTC 1 cut(s) 66
AspS9I GGNCC 1 cut(s) 27
AsuC2I CCSGG 1 cut(s) 550
AsuHPI GGTGA 2 cut(s) 20, 568
AvaII GGWCC 1 cut(s) 27
BaeGI GKGCMC 1 cut(s) 692
BanI GGYRCC 1 cut(s) 158
BanII GRGCYC 2 cut(s) 136, 603
BbsI GAAGAC 1 cut(s) 258
Bbv12I GWGCWC 1 cut(s) 274
BbvI GCAGC 1 cut(s) 31
BccI CCATC 2 cut(s) 355, 646
BceAI ACGGC 1 cut(s) 647
BciT130I CCWGG 2 cut(s) 316, 506
BcnI CCSGG 1 cut(s) 550
BcoDI GTCTC 2 cut(s) 257, 364
BfaI CTAG 1 cut(s) 579
BglII AGATCT 1 cut(s) 121
BisI GCNGC 2 cut(s) 45, 340
BlpI GCTNAGC 1 cut(s) 48
BlsI GCNGC 2 cut(s) 46, 341
Bme1390I CCNGG 3 cut(s) 316, 506, 550
Bme18I GGWCC 1 cut(s) 27
BmgT120I GGNCC 1 cut(s) 27
BmiI GGNNCC 2 cut(s) 29, 160
BmrFI CCNGG 3 cut(s) 316, 506, 550
BpiI GAAGAC 1 cut(s) 258
BplI GAGNNNNNCTC 2 cut(s) 383, 415
BpmI CTGGAG 1 cut(s) 288
Bpu1102I GCTNAGC 1 cut(s) 48
BpuMI CCSGG 1 cut(s) 550
BsaBI GATNNNNATC 1 cut(s) 126
BsaJI CCNNGG 4 cut(s) 111, 246, 315, 548
Bsc4I CCNNNNNNNGG 1 cut(s) 37
Bse1I ACTGG 1 cut(s) 271
Bse3DI GCAATG 1 cut(s) 490
Bse8I GATNNNNATC 1 cut(s) 126
BseBI CCWGG 2 cut(s) 316, 506
BseDI CCNNGG 4 cut(s) 111, 246, 315, 548
BseGI GGATG 2 cut(s) 180, 565
BseJI GATNNNNATC 1 cut(s) 126
BseLI CCNNNNNNNGG 1 cut(s) 37
BseMI GCAATG 1 cut(s) 490
BseMII CTCAG 4 cut(s) 89, 252, 616, 639
BseNI ACTGG 1 cut(s) 271
BseSI GKGCMC 1 cut(s) 692
BseXI GCAGC 1 cut(s) 31
BshNI GGYRCC 1 cut(s) 158
BsiHKAI GWGCWC 1 cut(s) 274
BsiSI CCGG 1 cut(s) 550
BslI CCNNNNNNNGG 1 cut(s) 37
BsmAI GTCTC 2 cut(s) 257, 364
Bsp1286I GDGCHC 4 cut(s) 136, 274, 603, 692
Bsp143I GATC 2 cut(s) 121, 517
Bsp1720I GCTNAGC 1 cut(s) 48
BspACI CCGC 3 cut(s) 339, 376, 437
BspCNI CTCAG 4 cut(s) 88, 253, 615, 640
BspLI GGNNCC 2 cut(s) 29, 160
BspT107I GGYRCC 1 cut(s) 158
BsrDI GCAATG 1 cut(s) 490
BsrI ACTGG 1 cut(s) 271
BssECI CCNNGG 4 cut(s) 111, 246, 315, 548
BssMI GATC 2 cut(s) 121, 517
BssT1I CCWWGG 2 cut(s) 111, 246
Bst2UI CCWGG 2 cut(s) 316, 506
Bst4CI ACNGT 2 cut(s) 628, 684
Bst6I CTCTTC 2 cut(s) 189, 384
BstDEI CTNAG 5 cut(s) 48, 75, 261, 602, 648
BstF5I GGATG 2 cut(s) 180, 565
BstKTI GATC 2 cut(s) 124, 520
BstMAI GTCTC 2 cut(s) 257, 364
BstMBI GATC 2 cut(s) 121, 517
BstMWI GCNNNNNNNGC 1 cut(s) 617
BstNI CCWGG 2 cut(s) 316, 506
BstSCI CCNGG 3 cut(s) 314, 504, 548
BstSLI GKGCMC 1 cut(s) 692
BstV1I GCAGC 1 cut(s) 31
BstV2I GAAGAC 1 cut(s) 258
BstX2I RGATCY 1 cut(s) 121
BstYI RGATCY 1 cut(s) 121
BtsCI GGATG 2 cut(s) 180, 565
Cfr13I GGNCC 1 cut(s) 27
CviAII CATG 1 cut(s) 325
DdeI CTNAG 5 cut(s) 48, 75, 261, 602, 648
DpnI GATC 2 cut(s) 123, 519
DpnII GATC 2 cut(s) 121, 517
Eam1104I CTCTTC 2 cut(s) 189, 384
EarI CTCTTC 2 cut(s) 189, 384
Eco130I CCWWGG 2 cut(s) 111, 246
Eco24I GRGCYC 2 cut(s) 136, 603
Eco32I GATATC 1 cut(s) 491
Eco47I GGWCC 1 cut(s) 27
Eco57I CTGAAG 1 cut(s) 213
EcoRII CCWGG 2 cut(s) 314, 504
EcoRV GATATC 1 cut(s) 491
EcoT14I CCWWGG 2 cut(s) 111, 246
EcoT38I GRGCYC 2 cut(s) 136, 603
ErhI CCWWGG 2 cut(s) 111, 246
FaeI CATG 1 cut(s) 328
FatI CATG 1 cut(s) 324
Fnu4HI GCNGC 2 cut(s) 45, 340
FokI GGATG 2 cut(s) 167, 552
FriOI GRGCYC 2 cut(s) 136, 603
Fsp4HI GCNGC 2 cut(s) 45, 340
FspBI CTAG 1 cut(s) 579
GluI GCNGC 2 cut(s) 45, 340
GsuI CTGGAG 1 cut(s) 288
HapII CCGG 1 cut(s) 550
Hin1II CATG 1 cut(s) 328
HincII GTYRAC 2 cut(s) 106, 243
HindII GTYRAC 2 cut(s) 106, 243
HindIII AAGCTT 1 cut(s) 50
HinfI GANTC 6 cut(s) 11, 73, 329, 440, 501, 746
HpaI GTTAAC 1 cut(s) 106
HpaII CCGG 1 cut(s) 550
HphI GGTGA 2 cut(s) 20, 568
Hpy166II GTNNAC 4 cut(s) 106, 243, 464, 563
Hpy188I TCNGA 4 cut(s) 22, 72, 78, 751
Hpy188III TCNNGA 4 cut(s) 184, 428, 521, 771
Hpy8I GTNNAC 4 cut(s) 106, 243, 464, 563
HpyAV CCTTC 4 cut(s) 28, 206, 579, 644
HpyCH4III ACNGT 2 cut(s) 628, 684
HpyCH4IV ACGT 1 cut(s) 423
HpyCH4V TGCA 1 cut(s) 620
HpyF10VI GCNNNNNNNGC 1 cut(s) 617
HpyF3I CTNAG 5 cut(s) 48, 75, 261, 602, 648
HpySE526I ACGT 1 cut(s) 423
Hsp92II CATG 1 cut(s) 328
KspAI GTTAAC 1 cut(s) 106
Kzo9I GATC 2 cut(s) 121, 517
LmnI GCTCC 1 cut(s) 269
Lsp1109I GCAGC 1 cut(s) 31
MaeI CTAG 1 cut(s) 579
MaeII ACGT 1 cut(s) 423
MaeIII GTNAC 2 cut(s) 678, 737
MalI GATC 2 cut(s) 123, 519
MboI GATC 2 cut(s) 121, 517
MboII GAAGA 7 cut(s) 74, 116, 206, 221, 263, 401, 521
MfeI CAATTG 1 cut(s) 674
MflI RGATCY 1 cut(s) 121
MhlI GDGCHC 4 cut(s) 136, 274, 603, 692
MluCI AATT 5 cut(s) 66, 233, 384, 408, 674
MlyI GAGTC 2 cut(s) 20, 67
MnlI CCTC 4 cut(s) 31, 165, 372, 648
MroXI GAANNNNTTC 1 cut(s) 66
MseI TTAA 3 cut(s) 105, 383, 719
MslI CAYNNNNRTG 1 cut(s) 685
MspA1I CMGCKG 1 cut(s) 376
MspI CCGG 1 cut(s) 550
MspR9I CCNGG 3 cut(s) 316, 506, 550
MunI CAATTG 1 cut(s) 674
MvaI CCWGG 2 cut(s) 316, 506
MwoI GCNNNNNNNGC 1 cut(s) 617
NciI CCSGG 1 cut(s) 550
NdeII GATC 2 cut(s) 121, 517
NlaIII CATG 1 cut(s) 328
NlaIV GGNNCC 2 cut(s) 29, 160
NmuCI GTSAC 2 cut(s) 678, 737
OliI CACNNNNGTG 1 cut(s) 685
PdmI GAANNNNTTC 1 cut(s) 66
PfeI GAWTC 4 cut(s) 329, 440, 501, 746
PfoI TCCNGGA 1 cut(s) 504
PkrI GCNGC 2 cut(s) 46, 341
PleI GAGTC 2 cut(s) 19, 67
PpsI GAGTC 2 cut(s) 19, 67
PsiI TTATAA 1 cut(s) 407
Psp6I CCWGG 2 cut(s) 314, 504
PspGI CCWGG 2 cut(s) 314, 504
PspN4I GGNNCC 2 cut(s) 29, 160
PspPI GGNCC 1 cut(s) 27
PsuI RGATCY 1 cut(s) 121
RseI CAYNNNNRTG 1 cut(s) 685
SaqAI TTAA 3 cut(s) 105, 383, 719
SatI GCNGC 2 cut(s) 45, 340
Sau3AI GATC 2 cut(s) 121, 517
Sau96I GGNCC 1 cut(s) 27
SchI GAGTC 2 cut(s) 20, 67
ScrFI CCNGG 3 cut(s) 316, 506, 550
SduI GDGCHC 4 cut(s) 136, 274, 603, 692
SetI ASST 9 cut(s) 10, 46, 54, 160, 217, 280, 383, 426, 760
SinI GGWCC 1 cut(s) 27
SmiMI CAYNNNNRTG 1 cut(s) 685
Sse9I AATT 5 cut(s) 66, 233, 384, 408, 674
SsiI CCGC 3 cut(s) 339, 376, 437
SspI AATATT 1 cut(s) 83
SspMI CTAG 1 cut(s) 579
StyD4I CCNGG 3 cut(s) 314, 504, 548
StyI CCWWGG 2 cut(s) 111, 246
TaaI ACNGT 2 cut(s) 628, 684
TaiI ACGT 1 cut(s) 426
TaqI TCGA 3 cut(s) 130, 429, 713
TasI AATT 5 cut(s) 66, 233, 384, 408, 674
TauI GCSGC 1 cut(s) 342
TfiI GAWTC 4 cut(s) 329, 440, 501, 746
Tru1I TTAA 3 cut(s) 105, 383, 719
Tru9I TTAA 3 cut(s) 105, 383, 719
TseFI GTSAC 2 cut(s) 678, 737
TseI GCWGC 1 cut(s) 44
Tsp45I GTSAC 2 cut(s) 678, 737
TspDTI ATGAA 5 cut(s) 116, 216, 245, 315, 447
VpaK11BI GGWCC 1 cut(s) 27
XapI RAATTY 2 cut(s) 66, 233
XcmI CCANNNNNNNNNTGG 1 cut(s) 322
XmnI GAANNNNTTC 1 cut(s) 66
XspI CTAG 1 cut(s) 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.