Rmu_sc0005171.1_g000002

Plant protein of unknown function (DUF936)

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005171.1
Physical Location & Seq
Reverse (-)
11858 .. 18929
7072 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005171.1_g000002.1.cds

Sequence Viewer

Length: 1710 bp
atggcgtcgcccactcccggaatcctcctccggctcctccagtccatgaactccgccaccaaagtcaccggcgaccaccgctccgccctccttcaagtcatcggcatcgtccccgccctcgccggttccgacgacctctggcccaaccaaggcttctacgtccagctctccgactccctcaactccacctacgtttccctctccgagaaagacaccgatctcatcctcgccaaccgcctccagctcggccagttcgtctacgtcgaccgcttcgatttcgactctccggtgccgcgcgtctccggaatccgccccatcgctggccgccaccccttcgtcggttcgccggagcctctggtggcgcagatctcggcgtctaagagggagttcgtgatcaagccggtgtcggattccgaccagtccgccgatttcatggcgatttatctgtccaagaagcaggatcagccggccgtcaggacggaggcgaagattgagaagggaagatcgccgcagcggcggcagccttttgcgaatagagagaatgttaatgtgggagggaatgtgaattcagacgaggcaaagaaggtctcggatcggccggtggcggccagattctcatctccggccaccgcaaagaggtctgcttcagcggggaagaagaatgtggccgtacctccggcggagagggatccgtcgccggccggaaaaggaaagagatcgtcgtctcctgcgccgtcgaaatgtgtggttccgagcttgatggtggcgcgtgaagagaatcggaaggtggctaaggagccctcgattattgtgccgtcgaggtaccggcagccgtcgccaattgggcggaggcaggcgtcgccgaatccccgaagagcttcgatttctccggggaggagattgtctgttgggggagcgaaggactctgctgcaaggaagaaaatggctacaattgttgccggaatttcgaagatttcggattcaattgcagggtctggtaagaataaccggaagggatgggaagatgagtcgcctgcggtgcagcaaaaggagaagcctgtgtcaaagaacaaaccggatgtgcaagcaattttgcgaactcaggctgccctttcgagaagattaagtgatgcaaaaacaacaagtgatgattgttcaagtgtgaaatcgaaggctagctcacatgaagattccccggtccaagagaagccaagctatgcagctctggggatcactgttcatgaaaggaaatggactgatggtagtgttcgattagatggagtctctgcagaccttgcaagacttggaaaggaagctatgcaaaggaaggcacttgctgccacagctgcagccgaagcactagaggaggcgattgcaacggagtctcttgttaggaaattaagcatgtttgcagaactgtcgaccacatcaaagattgggaaccctttacctgccattgaccagttcttttcgatttatgatgatgttgttaaatcaacaactactctagaatcaattgcctgcaaccgcagttctgatgcacctcatgataacattccaactgagcaatcaaaatcagtttctctttgggttgaagctgccttggctactgatcttggaattgacggtagacatcatcatctggtgaaaaagcaacagtcgacgacctttgagacgtgtcacgagcaaactgagacattgtttgcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

569

Amino Acids

61.36

Weight (kDa)

9.6

Isoelectric Point (pI)

62.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011282)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1459
Acc65I GGTACC 1 cut(s) 822
AccB1I GGYRCC 2 cut(s) 289, 822
AccBSI CCGCTC 1 cut(s) 81
AccI GTMKAC 5 cut(s) 258, 264, 1421, 1630, 1661
AccII CGCG 3 cut(s) 295, 297, 769
AccIII TCCGGA 1 cut(s) 302
AclWI GGATC 5 cut(s) 468, 600, 683, 696, 1238
AcoI YGGCCR 8 cut(s) 247, 322, 468, 596, 606, 624, 666, 699
AcsI RAATTY 2 cut(s) 565, 963
AcuI CTGAAG 1 cut(s) 630
AcyI GRCGYC 3 cut(s) 5, 374, 857
AfaI GTAC 2 cut(s) 672, 824
AfiI CCNNNNNNNGG 5 cut(s) 17, 149, 320, 338, 636
AflIII ACRYGT 1 cut(s) 1676
AgsI TTSAA 4 cut(s) 95, 984, 1158, 1595
AjiI CACGTC 1 cut(s) 1677
AjuI GAANNNNNNNTTGG 2 cut(s) 137, 169
Alw26I GTCTC 7 cut(s) 304, 592, 729, 1288, 1389, 1667, 1688
AlwI GGATC 5 cut(s) 468, 600, 683, 696, 1238
AlwNI CAGNNNCTG 1 cut(s) 995
Aor13HI TCCGGA 1 cut(s) 302
AoxI GGCC 9 cut(s) 140, 247, 322, 468, 596, 606, 624, 666, 699
ApoI RAATTY 2 cut(s) 565, 963
Asp700I GAANNNNTTC 1 cut(s) 877
Asp718I GGTACC 1 cut(s) 822
AspLEI GCGC 4 cut(s) 297, 364, 733, 769
AspS9I GGNCC 2 cut(s) 141, 1198
AsuC2I CCSGG 3 cut(s) 18, 891, 1196
AsuHPI GGTGA 2 cut(s) 58, 1657
AsuII TTCGAA 1 cut(s) 968
AsuNHI GCTAGC 1 cut(s) 1175
AvaII GGWCC 1 cut(s) 1198
BamHI GGATCC 1 cut(s) 688
BanI GGYRCC 2 cut(s) 289, 822
BanII GRGCYC 1 cut(s) 801
BauI CACGAG 1 cut(s) 1682
BccI CCATC 5 cut(s) 323, 754, 1011, 1253, 1271
BceAI ACGGC 5 cut(s) 455, 653, 718, 799, 817
BcgI CGANNNNNNTGC 4 cut(s) 793, 827, 1401, 1435
BclI TGATCA 1 cut(s) 393
BcnI CCSGG 3 cut(s) 18, 891, 1196
BcoDI GTCTC 7 cut(s) 304, 592, 729, 1288, 1389, 1667, 1688
BfaI CTAG 3 cut(s) 1176, 1361, 1508
BfmI CTRYAG 2 cut(s) 1287, 1347
BfuAI ACCTGC 1 cut(s) 1459
BglI GCCNNNNNGGC 2 cut(s) 514, 844
BglII AGATCT 1 cut(s) 366
Bme1390I CCNGG 3 cut(s) 18, 891, 1196
Bme18I GGWCC 1 cut(s) 1198
BmgBI CACGTC 1 cut(s) 1677
BmgT120I GGNCC 2 cut(s) 141, 1198
BmiI GGNNCC 9 cut(s) 35, 127, 291, 351, 690, 750, 798, 824, 1442
BmrFI CCNGG 3 cut(s) 18, 891, 1196
BmsI GCATC 3 cut(s) 114, 1120, 1528
BmtI GCTAGC 1 cut(s) 1179
BpmI CTGGAG 2 cut(s) 23, 224
Bpu10I CCTNAGC 1 cut(s) 792
Bpu14I TTCGAA 1 cut(s) 968
BpuMI CCSGG 3 cut(s) 18, 891, 1196
BsaBI GATNNNNATC 1 cut(s) 616
BsaHI GRCGYC 3 cut(s) 5, 374, 857
BsaI GGTCTC 1 cut(s) 592
BsaJI CCNNGG 4 cut(s) 148, 890, 1194, 1602
BsaWI WCCGGW 4 cut(s) 286, 302, 1008, 1075
BsaXI ACNNNNNCTCC 4 cut(s) 65, 95, 546, 576
Bsc4I CCNNNNNNNGG 5 cut(s) 17, 149, 320, 338, 636
Bse118I RCCGGY 7 cut(s) 68, 122, 400, 466, 598, 697, 825
Bse1I ACTGG 4 cut(s) 40, 250, 418, 1462
Bse8I GATNNNNATC 1 cut(s) 616
BseAI TCCGGA 1 cut(s) 302
BseDI CCNNGG 4 cut(s) 148, 890, 1194, 1602
BseGI GGATG 3 cut(s) 222, 1022, 1084
BseJI GATNNNNATC 1 cut(s) 616
BseLI CCNNNNNNNGG 5 cut(s) 17, 149, 320, 338, 636
BseMII CTCAG 3 cut(s) 1115, 1554, 1683
BseNI ACTGG 4 cut(s) 40, 250, 418, 1462
BseRI GAGGAG 4 cut(s) 17, 26, 910, 1379
BseX3I CGGCCG 3 cut(s) 468, 596, 699
BsgI GTGCAG 1 cut(s) 1061
Bsh1236I CGCG 3 cut(s) 295, 297, 769
Bsh1285I CGRYCG 4 cut(s) 268, 471, 599, 702
BshFI GGCC 9 cut(s) 142, 249, 324, 470, 598, 608, 626, 668, 701
BshNI GGYRCC 2 cut(s) 289, 822
BsiEI CGRYCG 4 cut(s) 268, 471, 599, 702
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 5 cut(s) 17, 149, 320, 338, 636
BsmAI GTCTC 7 cut(s) 304, 592, 729, 1288, 1389, 1667, 1688
BsmBI CGTCTC 3 cut(s) 304, 729, 1667
BsmFI GGGAC 1 cut(s) 95
BsnI GGCC 9 cut(s) 142, 249, 324, 470, 598, 608, 626, 668, 701
Bso31I GGTCTC 1 cut(s) 592
Bsp119I TTCGAA 1 cut(s) 968
Bsp1286I GDGCHC 1 cut(s) 801
Bsp13I TCCGGA 1 cut(s) 302
BspANI GGCC 9 cut(s) 142, 249, 324, 470, 598, 608, 626, 668, 701
BspCNI CTCAG 3 cut(s) 1114, 1555, 1684
BspEI TCCGGA 1 cut(s) 302
BspFNI CGCG 3 cut(s) 295, 297, 769
BspHI TCATGA 2 cut(s) 1240, 1546
BspLI GGNNCC 9 cut(s) 35, 127, 291, 351, 690, 750, 798, 824, 1442
BspMAI CTGCAG 2 cut(s) 1291, 1351
BspMI ACCTGC 1 cut(s) 1459
BspOI GCTAGC 1 cut(s) 1179
BspPI GGATC 5 cut(s) 468, 600, 683, 696, 1238
BspQI GCTCTTC 1 cut(s) 868
BspT104I TTCGAA 1 cut(s) 968
BspT107I GGYRCC 2 cut(s) 289, 822
BspTNI GGTCTC 1 cut(s) 592
BsrBI CCGCTC 1 cut(s) 81
BsrFI RCCGGY 7 cut(s) 68, 122, 400, 466, 598, 697, 825
BsrI ACTGG 4 cut(s) 40, 250, 418, 1462
BssAI RCCGGY 7 cut(s) 68, 122, 400, 466, 598, 697, 825
BssECI CCNNGG 4 cut(s) 148, 890, 1194, 1602
BssNI GRCGYC 3 cut(s) 5, 374, 857
BssSI CACGAG 1 cut(s) 1682
BssT1I CCWWGG 2 cut(s) 148, 1602
Bst2BI CACGAG 1 cut(s) 1682
Bst4CI ACNGT 4 cut(s) 1237, 1419, 1628, 1659
Bst6I CTCTTC 2 cut(s) 768, 868
BstACI GRCGYC 3 cut(s) 5, 374, 857
BstAPI GCANNNNNTGC 2 cut(s) 1295, 1337
BstBI TTCGAA 1 cut(s) 968
BstC8I GCNNGC 8 cut(s) 322, 468, 699, 855, 1035, 1086, 1177, 1522
BstDEI CTNAG 5 cut(s) 378, 792, 1101, 1563, 1692
BstF5I GGATG 3 cut(s) 222, 1022, 1084
BstFNI CGCG 3 cut(s) 295, 297, 769
BstHHI GCGC 4 cut(s) 297, 364, 733, 769
BstMAI GTCTC 7 cut(s) 304, 592, 729, 1288, 1389, 1667, 1688
BstMCI CGRYCG 4 cut(s) 268, 471, 599, 702
BstNSI RCATGY 1 cut(s) 1408
BstSCI CCNGG 3 cut(s) 16, 889, 1194
BstSFI CTRYAG 2 cut(s) 1287, 1347
BstUI CGCG 3 cut(s) 295, 297, 769
BstX2I RGATCY 2 cut(s) 366, 688
BstYI RGATCY 2 cut(s) 366, 688
BstZI CGGCCG 3 cut(s) 468, 596, 699
BsuRI GGCC 9 cut(s) 142, 249, 324, 470, 598, 608, 626, 668, 701
BtgZI GCGATG 1 cut(s) 301
BtrI CACGTC 1 cut(s) 1677
BtsCI GGATG 3 cut(s) 222, 1022, 1084
BtsIMutI CAGTG 1 cut(s) 1233
BveI ACCTGC 1 cut(s) 1459
Cac8I GCNNGC 8 cut(s) 322, 468, 699, 855, 1035, 1086, 1177, 1522
CaiI CAGNNNCTG 1 cut(s) 995
CciI TCATGA 2 cut(s) 1240, 1546
CfoI GCGC 4 cut(s) 297, 364, 733, 769
Cfr10I RCCGGY 7 cut(s) 68, 122, 400, 466, 598, 697, 825
Cfr13I GGNCC 2 cut(s) 141, 1198
CseI GACGC 3 cut(s) 286, 363, 846
Csp6I GTAC 2 cut(s) 671, 823
CviAII CATG 7 cut(s) 46, 433, 1184, 1241, 1405, 1547, 1707
CviQI GTAC 2 cut(s) 671, 823
DdeI CTNAG 5 cut(s) 378, 792, 1101, 1563, 1692
EaeI YGGCCR 8 cut(s) 247, 322, 468, 596, 606, 624, 666, 699
EagI CGGCCG 3 cut(s) 468, 596, 699
Eam1104I CTCTTC 2 cut(s) 768, 868
EarI CTCTTC 2 cut(s) 768, 868
EciI GGCGGA 6 cut(s) 43, 73, 299, 412, 695, 862
EclXI CGGCCG 3 cut(s) 468, 596, 699
Eco130I CCWWGG 2 cut(s) 148, 1602
Eco24I GRGCYC 1 cut(s) 801
Eco31I GGTCTC 1 cut(s) 592
Eco47I GGWCC 1 cut(s) 1198
Eco52I CGGCCG 3 cut(s) 468, 596, 699
Eco57I CTGAAG 1 cut(s) 630
EcoRI GAATTC 1 cut(s) 565
EcoT14I CCWWGG 2 cut(s) 148, 1602
EcoT38I GRGCYC 1 cut(s) 801
ErhI CCWWGG 2 cut(s) 148, 1602
Esp3I CGTCTC 3 cut(s) 304, 729, 1667
FaeI CATG 7 cut(s) 49, 436, 1187, 1244, 1408, 1550, 1710
FaqI GGGAC 1 cut(s) 95
FatI CATG 7 cut(s) 45, 432, 1183, 1240, 1404, 1546, 1706
FauI CCCGC 2 cut(s) 121, 643
FbaI TGATCA 1 cut(s) 393
FblI GTMKAC 5 cut(s) 258, 264, 1421, 1630, 1661
FokI GGATG 3 cut(s) 209, 1029, 1091
FriOI GRGCYC 1 cut(s) 801
FspBI CTAG 3 cut(s) 1176, 1361, 1508
GlaI GCGC 4 cut(s) 296, 363, 732, 768
GsuI CTGGAG 2 cut(s) 23, 224
HaeIII GGCC 9 cut(s) 142, 249, 324, 470, 598, 608, 626, 668, 701
HgaI GACGC 3 cut(s) 286, 363, 846
HhaI GCGC 4 cut(s) 297, 364, 733, 769
Hin1I GRCGYC 3 cut(s) 5, 374, 857
Hin1II CATG 7 cut(s) 49, 436, 1187, 1244, 1408, 1550, 1710
Hin6I GCGC 4 cut(s) 295, 362, 731, 767
HinP1I GCGC 4 cut(s) 295, 362, 731, 767
HincII GTYRAC 3 cut(s) 265, 1422, 1662
HindII GTYRAC 3 cut(s) 265, 1422, 1662
HphI GGTGA 2 cut(s) 58, 1657
Hpy166II GTNNAC 5 cut(s) 259, 265, 1422, 1631, 1662
Hpy188III TCNNGA 8 cut(s) 303, 391, 475, 1116, 1241, 1508, 1547, 1682
Hpy8I GTNNAC 5 cut(s) 259, 265, 1422, 1631, 1662
HpyAV CCTTC 9 cut(s) 101, 343, 490, 577, 778, 913, 1006, 1165, 1321
HpyCH4III ACNGT 4 cut(s) 1237, 1419, 1628, 1659
HpyCH4IV ACGT 4 cut(s) 159, 192, 261, 1676
HpyF3I CTNAG 5 cut(s) 378, 792, 1101, 1563, 1692
HpySE526I ACGT 4 cut(s) 159, 192, 261, 1676
Hsp92I GRCGYC 3 cut(s) 5, 374, 857
Hsp92II CATG 7 cut(s) 49, 436, 1187, 1244, 1408, 1550, 1710
HspAI GCGC 4 cut(s) 295, 362, 731, 767
Kpn2I TCCGGA 1 cut(s) 302
KpnI GGTACC 1 cut(s) 826
KroI GCCGGC 2 cut(s) 466, 697
KroNI GCCGGC 2 cut(s) 468, 699
Ksp22I TGATCA 1 cut(s) 393
LguI GCTCTTC 1 cut(s) 868
LmnI GCTCC 5 cut(s) 39, 86, 349, 796, 914
LweI GCATC 3 cut(s) 114, 1120, 1528
MaeI CTAG 3 cut(s) 1176, 1361, 1508
MaeII ACGT 4 cut(s) 159, 192, 261, 1676
MaeIII GTNAC 2 cut(s) 64, 1679
MbiI CCGCTC 1 cut(s) 81
MfeI CAATTG 4 cut(s) 840, 951, 984, 1515
MflI RGATCY 2 cut(s) 366, 688
MhlI GDGCHC 1 cut(s) 801
MluCI AATT 9 cut(s) 565, 840, 951, 963, 984, 1089, 1397, 1515, 1620
MlyI GAGTC 6 cut(s) 167, 275, 917, 1037, 1290, 1391
MmeI TCCRAC 5 cut(s) 153, 195, 387, 438, 1583
MroI TCCGGA 1 cut(s) 302
MroNI GCCGGC 2 cut(s) 466, 697
MroXI GAANNNNTTC 1 cut(s) 877
MseI TTAA 4 cut(s) 546, 1124, 1400, 1491
MspA1I CMGCKG 3 cut(s) 514, 650, 1346
MspR9I CCNGG 3 cut(s) 18, 891, 1196
MunI CAATTG 4 cut(s) 840, 951, 984, 1515
MvnI CGCG 3 cut(s) 295, 297, 769
NaeI GCCGGC 2 cut(s) 468, 699
NciI CCSGG 3 cut(s) 18, 891, 1196
NgoMIV GCCGGC 2 cut(s) 466, 697
NheI GCTAGC 1 cut(s) 1175
NlaIII CATG 7 cut(s) 49, 436, 1187, 1244, 1408, 1550, 1710
NlaIV GGNNCC 9 cut(s) 35, 127, 291, 351, 690, 750, 798, 824, 1442
NmeAIII GCCGAG 2 cut(s) 225, 350
NmuCI GTSAC 2 cut(s) 64, 1679
NspI RCATGY 1 cut(s) 1408
NspV TTCGAA 1 cut(s) 968
PagI TCATGA 2 cut(s) 1240, 1546
PciSI GCTCTTC 1 cut(s) 868
PcsI WCGNNNNNNNCGW 4 cut(s) 126, 252, 261, 270
PdiI GCCGGC 2 cut(s) 468, 699
PdmI GAANNNNTTC 1 cut(s) 877
PfeI GAWTC 9 cut(s) 21, 306, 410, 612, 778, 865, 980, 1190, 1511
PfoI TCCNGGA 1 cut(s) 16
PleI GAGTC 6 cut(s) 167, 275, 917, 1036, 1289, 1390
PpsI GAGTC 6 cut(s) 167, 275, 917, 1036, 1289, 1390
PspN4I GGNNCC 9 cut(s) 35, 127, 291, 351, 690, 750, 798, 824, 1442
PspPI GGNCC 2 cut(s) 141, 1198
PstI CTGCAG 2 cut(s) 1291, 1351
PstNI CAGNNNCTG 1 cut(s) 995
PsuI RGATCY 2 cut(s) 366, 688
PvuII CAGCTG 1 cut(s) 1346
RsaI GTAC 2 cut(s) 672, 824
RsaNI GTAC 2 cut(s) 671, 823
SalI GTCGAC 3 cut(s) 263, 1420, 1660
SapI GCTCTTC 1 cut(s) 868
SaqAI TTAA 4 cut(s) 546, 1124, 1400, 1491
Sau96I GGNCC 2 cut(s) 141, 1198
SchI GAGTC 6 cut(s) 167, 275, 917, 1037, 1290, 1391
ScrFI CCNGG 3 cut(s) 18, 891, 1196
SduI GDGCHC 1 cut(s) 801
SfaNI GCATC 3 cut(s) 114, 1120, 1528
SfcI CTRYAG 2 cut(s) 1287, 1347
SfuI TTCGAA 1 cut(s) 968
SgrAI CRCCGGYG 1 cut(s) 68
SinI GGWCC 1 cut(s) 1198
Sse9I AATT 9 cut(s) 565, 840, 951, 963, 984, 1089, 1397, 1515, 1620
SspMI CTAG 3 cut(s) 1176, 1361, 1508
StyD4I CCNGG 3 cut(s) 16, 889, 1194
StyI CCWWGG 2 cut(s) 148, 1602
TaaI ACNGT 4 cut(s) 1237, 1419, 1628, 1659
TaiI ACGT 4 cut(s) 162, 195, 264, 1679
TasI AATT 9 cut(s) 565, 840, 951, 963, 984, 1089, 1397, 1515, 1620
TauI GCSGC 6 cut(s) 295, 327, 511, 517, 520, 608
TfiI GAWTC 9 cut(s) 21, 306, 410, 612, 778, 865, 980, 1190, 1511
Tru1I TTAA 4 cut(s) 546, 1124, 1400, 1491
Tru9I TTAA 4 cut(s) 546, 1124, 1400, 1491
TscAI CASTG 1 cut(s) 1240
TseFI GTSAC 2 cut(s) 64, 1679
Tsp45I GTSAC 2 cut(s) 64, 1679
TspDTI ATGAA 5 cut(s) 62, 421, 1200, 1229, 1257
TspGWI ACGGA 3 cut(s) 494, 681, 1394
TspRI CASTG 1 cut(s) 1240
VpaK11BI GGWCC 1 cut(s) 1198
XapI RAATTY 2 cut(s) 565, 963
XbaI TCTAGA 1 cut(s) 1507
XceI RCATGY 1 cut(s) 1408
XmiI GTMKAC 5 cut(s) 258, 264, 1421, 1630, 1661
XmnI GAANNNNTTC 1 cut(s) 877
XspI CTAG 3 cut(s) 1176, 1361, 1508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.