Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0011654

Physical Location & Seq

Genomic Coordinates Reverse (-)

19282781 .. 19287086

Gene Structure 4306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017627

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3054 bp

ATGGAGAGTTATTTGCAAGAGAACTTTGGGGAAGTGAAGGCTAAGGGCTCGTCTGAAGAAACGTTGCAGAAATGGAGGAAGCTCTGTGGAGTTGTGAAGAACCCGAAAAGAAGGTTTCGGTTCACTGCTAATCTTTCCAAGCGTATAGAGGCTGCGGCTATGCGCCGTACCAATCAGGAGAAATTGAGGATTGCAGTTCTGGTTTCTAAAGCTGCATTTCAATTTATTCAAGGTGTACAGCCAAGTGACTATGTTCTACCTCAGGAAGTTAAAGCGGCAGGTTTTGGGATCTGTGCTGATGAATTGGGATCCATTGTGGAAGGCCATGATGTAAAGAAGCTAAAATTTCATGGAGGGGTAACTGGCCTTTCAGAAAAGCTCTCCACATCTATAAATGATGGGCTCAATACCGAAACTGATTTGCACACTCGAAGACAAGAGATTTATGGCATTAATAAGTTTACAGAGAGCGAACAGCGTGGTTTCTTTGTATTTGTTTGGGAAGCCCTTCAGGACATGACTCTTATGATCCTCGGAGTGTGTGCTTTTGTGTCATTGATCGTTGGACTAGCAATGGAAGGATGGCCAGCAGGAGCTCATGATGGGCTTGGAATTGTTGCGAGTATTATGCTGGTTGTGTTTGTCACGGCAACAAGTGATTATCGGCAATCACTACAGTTCAGGGACTTGGACAAGGAGAAGAAGAAGATTGCTATGCAAGTAACAAGAAATGGGTATAGGCAGAAAATGTCTATTTATGAATTACTACCTGGTGATATTGTACACCTTTCTATTGGAGACCAAGTACCTGCAGATGGTCTATTTGTTTCTGGTTTTTCTGTCTTAATTGATGAATCCAGTTTAACTGGTGAGAGTGAGCCTATTATGGTAACTCTTGAAAATCCCTTTCTTCTTTCTGGAACTAAGGTTCAAGATGGATCATGCAAGATGATGGTTACCACAGTCGGGATGAGAACTCAATGGGGAAAATTGATGGCTACACTAAGTGAAGGTGGAGATGATGAAACCCCATTGCAGGTCAAGTTGAATGGAGTGGCAACCATTATTGGTAAGATAGGACTTTTCTTTGCTGTTGTGACTTTTGCTGTTATGGTGCAAGGACTGTTTAGTCGAAAACTGCAAGAAGGGACACACTGGAGCTGGAATGGAGATGATGCAATGCAATTGTTAGAGTTCTTTGCTGTTGCAGTTACGATTGTTGTTGTTGCTGTCCCTGAGGGGCTGCCACTGGCTGTGACATTGAGTCTTGCATTTGCCATGAAGAAAATGATGAATGATAAGGCGCTTGTTCGCCATCTGGCAGCTTGCGAAACTATGGGATCAGCCACGAACATTTGCAGTGACAAAACTGGGACACTGACAACCAACAAAATGACTGTTGTGAAGTCATGCATTTGCATGAATGTCAAAGATGTGAGCAACCTCAGTGATGCTTCAAGCCTGTTCTCTGATCTTCTGGAATCTGTTAAGAAGGTTTTGCTGCAATCAATATTTAACAACACTGGTGGAGAAGTTGTGGTTAGCAAAGGTGGTAAGAATGAGATGTTGGGAACACCTACCGACACTGCTTTGTTGGCGTTTGGCTTGGCACTTGGTGGAGATTTTCAAGCAGAAAGAAATGCTTCTAAACTTGTGAAAGTTGAGCCTTTCAACTCAACGAAGAAAAGAATGGGGGTCGTGTTGGAGCTTCCTGAAGGAGGAGGTTTCAGAGCACATACTAAAGGTGCTTCAGAAATCATTTTGGCCAACTGTGACAAGGTGATCAATTCAAAGGGTGAAACTGTTCCTCTTGATGAAGCATCCATTAAGCATCTCCAAGCTACTATCAATGATTTTGCTTGTGAGGCTCTTCGAACTATCTGCCTTGGCTATATGGAATTAGAAAAAGGATTCTCTGCTGAGGATCCCATTCCAACTTCTGGATATACTTGCATAGGAATTGTTGGCATTAAGGATCCTGTTCGTCCCGGTGTCAAGGAGTCTGTTGCAGTTTGCCGTTCAGCTGGTATCACAGTAAGAATGGTTACAGGAGACAATATTAACACTGCAAAGGCCATAGCAAGGGAATGTGGGATTCTCACTGATGATGGATTAGCCATTGAAGGTCCGGAGTTCAGGGAGAAGAATCAAGAAGAATTGCTTTCACTGATACCTAAAATTCAGGTTATGGCGCGATCATCGCCTCTAGACAAGCATACCCTGGTAAAGCACTTGAGGACCACATTTGATGAAGTCGTTGCTGTAACTGGTGATGGAACAAATGATGCCCCAGCACTTCATGAGGCAGATATTGGACTAGCCATGGGCATTGCTGGAACTGAGGTGGCTAAGGAGAGTGCTGATGTTCTAATTCTGGATGATAATTTCTCCACAATTGTGACAGTGGCAAAATGGGGACGTTCGGTTTACATCAATATCCAAAAATTTGTGCAGTTCCAGCTGACTGTTAATATTGTTGCATTGATTGTTAACTTCTCCTCGGCCTGTTTGACAGGGAGTGCTCCCCTCACTGCTGTTCAGCTATTGTGGGTGAACATGATTATGGACACACTGGGAGCACTTGCACTTGCAACTGAGCCTCCAAATAATGACTTAATGAAGCGCCCGCCAGTTGGAAAGAGGCAAAATTTCATCAGTAATGTAATGTGGAGGAATATTTTAGGGCAGTCTTTCTATCAATTTACAGTGTTATGGCTTCTTCAGGCTAAAGGAGAATCAATATTTCGTCTTAATGGACCAGATTCTAACTTGGTCCTGAACACACTCATTTTCAATACATTCGTCTTCTGTCAGGTGTTTAACGAAATAAGCTCGCGTGAGATGGAAGAAATAGATGTTTTCAAGGGCATATTGGATAATTACGTTTTCGTTGCAGTCCTCAGTGCCACAGTTGTGTTCCAAATCATTATTATCGAGTTTCTGGGGAAGTTTGCTAGCACAGCACCTCTAACCTTTGTTCAATGGTTTGTTACTGTATTCATTGGCTTTTTAGGGATGCCAATCGCTGCTGGTTTGAAGAAGATTCCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007275 GO:0008150 GO:0008324 GO:0009555 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0031984 GO:0032501 GO:0032502 GO:0034220 GO:0042175 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0098827 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase Hydrolase_3

Protein Analysis

1018

Amino Acids

110.79

Weight (kDa)

5.84

Isoelectric Point (pI)

34.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CaATP_NAI	PF12515	5 - 49	6.3e-21	Ca2+-ATPase N terminal autoinhibitory domain
Cation_ATPase_N	PF00690	117 - 185	6e-10	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	238 - 334	4.2e-21	P-type ATPase actuator domain
Cation_ATPase	PF13246	515 - 663	1.4e-32	P-type ATPase, cytoplasmic domain N
Hydrolase	PF00702	603 - 770	1.1e-11	haloacid dehalogenase-like hydrolase
Cation_ATPase_C	PF00689	841 - 1014	3.3e-42	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22950 AT4G37640
fragaria_vesca	FvH4_1g17620
malus_domestica	MD02G1185000.v1.1 MD15G1296400.v1.1
prunus_persica	Prupe.6G221800_v2.0.a1 Prupe.6G221800_v2.0.a1
pyrus_communis	pycom02g14990 pycom15g25970
rosa_chinensis	RchiOBHm_Chr2g0107911
rosa_laevigata	RLG00000017627
rosa_multiflora	Rmu_sc0001484.1_g000032
rosa_roxburghii	Rroxscaffold_2G00135800
rosa_rugosa	Rorug02G0148700 Rorug02G0148800 Rorug02G0148800
rosa_samantha	Rh2BG210900 Rh2CG202700
rosa_wichuraiana	Rw2G015710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1128
Acc36I	ACCTGC	3 cut(s)	269, 817, 1027
AccB7I	CCANNNNNTGG	1 cut(s)	1940
AccII	CGCG	2 cut(s)	2194, 2836
AccIII	TCCGGA	1 cut(s)	2128
AciI	CCGC	3 cut(s)	155, 275, 2627
AclI	AACGTT	1 cut(s)	62
AcoI	YGGCCR	2 cut(s)	584, 1764
AcsI	RAATTY	4 cut(s)	344, 2178, 2444, 2647
AcuI	CTGAAG	5 cut(s)	75, 494, 1734, 1734, 2705
AdeI	CACNNNGTG	2 cut(s)	1007, 1616
AfaI	GTAC	4 cut(s)	169, 237, 783, 807
AfiI	CCNNNNNNNGG	7 cut(s)	815, 966, 1036, 1718, 1940, 2082, 2633
AhdI	GACNNNNNGTC	1 cut(s)	1263
AjnI	CCWGG	2 cut(s)	769, 2220
AjuI	GAANNNNNNNTTGG	2 cut(s)	1550, 1582
AleI	CACNNNNGTG	2 cut(s)	2396, 2912
AloI	GAACNNNNNNTCC	2 cut(s)	912, 944
Alw21I	GWGCWC	4 cut(s)	598, 1735, 2524, 2581
Alw26I	GTCTC	2 cut(s)	792, 2046
Aor13HI	TCCGGA	1 cut(s)	2128
AoxI	GGCC	6 cut(s)	322, 364, 584, 1764, 2073, 2502
ApeKI	GCWGC	6 cut(s)	152, 212, 1243, 1322, 1501, 3026
ApoI	RAATTY	4 cut(s)	344, 2178, 2444, 2647
AseI	ATTAAT	1 cut(s)	453
Asp700I	GAANNNNTTC	3 cut(s)	507, 1642, 1803
AspLEI	GCGC	4 cut(s)	165, 1306, 2194, 2625
AspS9I	GGNCC	4 cut(s)	2126, 2238, 2756, 2773
AsuC2I	CCSGG	1 cut(s)	1989
AsuHPI	GGTGA	6 cut(s)	785, 881, 1792, 1808, 2282, 2563
AsuII	TTCGAA	1 cut(s)	1873
AsuNHI	GCTAGC	1 cut(s)	2954
AvaII	GGWCC	4 cut(s)	2126, 2238, 2756, 2773
AxyI	CCTNAGG	2 cut(s)	261, 1236
BalI	TGGCCA	2 cut(s)	586, 1766
BamHI	GGATCC	3 cut(s)	308, 1924, 1975
BanII	GRGCYC	3 cut(s)	50, 405, 598
BbsI	GAAGAC	2 cut(s)	439, 2797
Bbv12I	GWGCWC	4 cut(s)	598, 1735, 2524, 2581
BbvCI	CCTCAGC	1 cut(s)	1920
BbvI	GCAGC	6 cut(s)	139, 199, 1230, 1334, 1488, 3013
BceAI	ACGGC	3 cut(s)	150, 663, 2001
BcgI	CGANNNNNNTGC	4 cut(s)	610, 644, 1863, 1897
BciT130I	CCWGG	2 cut(s)	771, 2222
BclI	TGATCA	1 cut(s)	1782
BcnI	CCSGG	1 cut(s)	1989
BcoDI	GTCTC	2 cut(s)	792, 2046
BfaI	CTAG	4 cut(s)	569, 2207, 2318, 2955
BfmI	CTRYAG	2 cut(s)	674, 810
BfoI	RGCGCY	2 cut(s)	1307, 2626
BfuAI	ACCTGC	3 cut(s)	269, 817, 1027
BisI	GCNGC	8 cut(s)	153, 156, 213, 276, 1244, 1323, 1502, 3027
BlsI	GCNGC	8 cut(s)	154, 157, 214, 277, 1245, 1324, 1503, 3028
Bme1390I	CCNGG	3 cut(s)	771, 1989, 2222
Bme18I	GGWCC	4 cut(s)	2126, 2238, 2756, 2773
BmeRI	GACNNNNNGTC	1 cut(s)	1263
BmgT120I	GGNCC	4 cut(s)	2126, 2238, 2756, 2773
BmiI	GGNNCC	3 cut(s)	310, 1926, 1977
BmrFI	CCNGG	3 cut(s)	771, 1989, 2222
BmrI	ACTGGG	2 cut(s)	1380, 2582
BmsI	GCATC	6 cut(s)	1165, 1441, 1829, 1840, 2275, 3006
BmtI	GCTAGC	1 cut(s)	2958
BmuI	ACTGGG	2 cut(s)	1380, 2582
BpiI	GAAGAC	2 cut(s)	439, 2797
BpmI	CTGGAG	1 cut(s)	1177
Bpu10I	CCTNAGC	3 cut(s)	42, 1920, 2349
Bpu14I	TTCGAA	1 cut(s)	1873
BpuEI	CTTGAG	1 cut(s)	2254
BpuMI	CCSGG	1 cut(s)	1989
BsaBI	GATNNNNATC	1 cut(s)	3020
BsaI	GGTCTC	1 cut(s)	792
BsaJI	CCNNGG	5 cut(s)	532, 1885, 2220, 2322, 2499
BsaWI	WCCGGW	1 cut(s)	2128
BsaXI	ACNNNNNCTCC	6 cut(s)	789, 819, 1521, 1551, 2584, 2614
Bsc4I	CCNNNNNNNGG	7 cut(s)	815, 966, 1036, 1718, 1940, 2082, 2633
Bse21I	CCTNAGG	2 cut(s)	261, 1236
Bse3DI	GCAATG	4 cut(s)	579, 1031, 1185, 2328
Bse8I	GATNNNNATC	1 cut(s)	3020
BseAI	TCCGGA	1 cut(s)	2128
BseBI	CCWGG	2 cut(s)	771, 2222
BseDI	CCNNGG	5 cut(s)	532, 1885, 2220, 2322, 2499
BseGI	GGATG	5 cut(s)	587, 975, 1820, 2383, 3021
BseJI	GATNNNNATC	1 cut(s)	3020
BseLI	CCNNNNNNNGG	7 cut(s)	815, 966, 1036, 1718, 1940, 2082, 2633
BseMI	GCAATG	4 cut(s)	579, 1031, 1185, 2328
BseMII	CTCAG	7 cut(s)	275, 1227, 1459, 1911, 2331, 2586, 2914
BseRI	GAGGAG	2 cut(s)	1734, 2488
BseXI	GCAGC	6 cut(s)	139, 199, 1230, 1334, 1488, 3013
BseYI	CCCAGC	1 cut(s)	2290
BsgI	GTGCAG	1 cut(s)	2471
Bsh1236I	CGCG	2 cut(s)	2194, 2836
BshFI	GGCC	6 cut(s)	324, 366, 586, 1766, 2075, 2504
BsiHKAI	GWGCWC	4 cut(s)	598, 1735, 2524, 2581
BsiSI	CCGG	2 cut(s)	1989, 2129
BslFI	GGGAC	6 cut(s)	698, 1162, 1217, 1387, 1971, 2430
BslI	CCNNNNNNNGG	7 cut(s)	815, 966, 1036, 1718, 1940, 2082, 2633
BsmAI	GTCTC	2 cut(s)	792, 2046
BsmFI	GGGAC	6 cut(s)	698, 1162, 1217, 1387, 1971, 2430
BsnI	GGCC	6 cut(s)	324, 366, 586, 1766, 2075, 2504
Bso31I	GGTCTC	1 cut(s)	792
Bsp119I	TTCGAA	1 cut(s)	1873
Bsp1286I	GDGCHC	6 cut(s)	50, 405, 598, 1735, 2524, 2581
Bsp13I	TCCGGA	1 cut(s)	2128
Bsp1407I	TGTACA	2 cut(s)	235, 781
Bsp19I	CCATGG	1 cut(s)	2322
BspACI	CCGC	3 cut(s)	155, 275, 2627
BspANI	GGCC	6 cut(s)	324, 366, 586, 1766, 2075, 2504
BspCNI	CTCAG	7 cut(s)	274, 1228, 1458, 1912, 2332, 2587, 2913
BspEI	TCCGGA	1 cut(s)	2128
BspFNI	CGCG	2 cut(s)	2194, 2836
BspHI	TCATGA	2 cut(s)	598, 2299
BspLI	GGNNCC	3 cut(s)	310, 1926, 1977
BspMAI	CTGCAG	1 cut(s)	814
BspMI	ACCTGC	3 cut(s)	269, 817, 1027
BspOI	GCTAGC	1 cut(s)	2958
BspQI	GCTCTTC	1 cut(s)	1875
BspT104I	TTCGAA	1 cut(s)	1873
BspTNI	GGTCTC	1 cut(s)	792
BsrDI	GCAATG	4 cut(s)	579, 1031, 1185, 2328
BsrGI	TGTACA	2 cut(s)	235, 781
BssECI	CCNNGG	5 cut(s)	532, 1885, 2220, 2322, 2499
BssT1I	CCWWGG	2 cut(s)	1885, 2322
Bst2UI	CCWGG	2 cut(s)	771, 2222
Bst6I	CTCTTC	1 cut(s)	1875
BstAUI	TGTACA	2 cut(s)	235, 781
BstBI	TTCGAA	1 cut(s)	1873
BstC8I	GCNNGC	5 cut(s)	588, 1327, 2627, 2834, 2956
BstDSI	CCRYGG	1 cut(s)	2322
BstEII	GGTNACC	1 cut(s)	955
BstENI	CCTNNNNNAGG	1 cut(s)	1716
BstF5I	GGATG	5 cut(s)	587, 975, 1820, 2383, 3021
BstFNI	CGCG	2 cut(s)	2194, 2836
BstH2I	RGCGCY	2 cut(s)	1307, 2626
BstHHI	GCGC	4 cut(s)	165, 1306, 2194, 2625
BstMAI	GTCTC	2 cut(s)	792, 2046
BstMWI	GCNNNNNNNGC	5 cut(s)	1595, 1865, 2200, 2458, 2960
BstNI	CCWGG	2 cut(s)	771, 2222
BstPI	GGTNACC	1 cut(s)	955
BstSCI	CCNGG	3 cut(s)	769, 1987, 2220
BstSFI	CTRYAG	2 cut(s)	674, 810
BstUI	CGCG	2 cut(s)	2194, 2836
BstV1I	GCAGC	6 cut(s)	139, 199, 1230, 1334, 1488, 3013
BstV2I	GAAGAC	2 cut(s)	439, 2797
BstX2I	RGATCY	4 cut(s)	288, 308, 1924, 1975
BstYI	RGATCY	4 cut(s)	288, 308, 1924, 1975
Bsu36I	CCTNAGG	2 cut(s)	261, 1236
BsuRI	GGCC	6 cut(s)	324, 366, 586, 1766, 2075, 2504
BtgI	CCRYGG	1 cut(s)	2322
BtgZI	GCGATG	1 cut(s)	2184
BtsCI	GGATG	5 cut(s)	587, 975, 1820, 2383, 3021
BtsI	GCAGTG	5 cut(s)	123, 1366, 1584, 2064, 2529
BveI	ACCTGC	3 cut(s)	269, 817, 1027
Cac8I	GCNNGC	5 cut(s)	588, 1327, 2627, 2834, 2956
CciI	TCATGA	2 cut(s)	598, 2299
CfoI	GCGC	4 cut(s)	165, 1306, 2194, 2625
Cfr13I	GGNCC	4 cut(s)	2126, 2238, 2756, 2773
CsiI	ACCWGGT	1 cut(s)	769
Csp6I	GTAC	4 cut(s)	168, 236, 782, 806
CspCI	CAANNNNNGTGG	2 cut(s)	1507, 1542
CviQI	GTAC	4 cut(s)	168, 236, 782, 806
DraIII	CACNNNGTG	2 cut(s)	1007, 1616
DrdI	GACNNNNNNGTC	1 cut(s)	1128
DriI	GACNNNNNGTC	1 cut(s)	1263
DseDI	GACNNNNNNGTC	1 cut(s)	1128
EaeI	YGGCCR	2 cut(s)	584, 1764
Eam1104I	CTCTTC	1 cut(s)	1875
Eam1105I	GACNNNNNGTC	1 cut(s)	1263
EarI	CTCTTC	1 cut(s)	1875
Ecl136II	GAGCTC	1 cut(s)	596
Eco130I	CCWWGG	2 cut(s)	1885, 2322
Eco24I	GRGCYC	3 cut(s)	50, 405, 598
Eco31I	GGTCTC	1 cut(s)	792
Eco47I	GGWCC	4 cut(s)	2126, 2238, 2756, 2773
Eco53kI	GAGCTC	1 cut(s)	596
Eco57I	CTGAAG	5 cut(s)	75, 494, 1734, 1734, 2705
Eco81I	CCTNAGG	2 cut(s)	261, 1236
Eco91I	GGTNACC	1 cut(s)	955
EcoICRI	GAGCTC	1 cut(s)	596
EcoNI	CCTNNNNNAGG	1 cut(s)	1716
EcoO65I	GGTNACC	1 cut(s)	955
EcoRII	CCWGG	2 cut(s)	769, 2220
EcoT14I	CCWWGG	2 cut(s)	1885, 2322
EcoT22I	ATGCAT	1 cut(s)	1415
EcoT38I	GRGCYC	3 cut(s)	50, 405, 598
ErhI	CCWWGG	2 cut(s)	1885, 2322
FalI	AAGNNNNNCTT	4 cut(s)	1627, 1659, 2145, 2177
FaqI	GGGAC	6 cut(s)	698, 1162, 1217, 1387, 1971, 2430
FauI	CCCGC	1 cut(s)	2634
FbaI	TGATCA	1 cut(s)	1782
Fnu4HI	GCNGC	8 cut(s)	153, 156, 213, 276, 1244, 1323, 1502, 3027
FokI	GGATG	5 cut(s)	594, 982, 1807, 2390, 3028
FriOI	GRGCYC	3 cut(s)	50, 405, 598
Fsp4HI	GCNGC	8 cut(s)	153, 156, 213, 276, 1244, 1323, 1502, 3027
FspBI	CTAG	4 cut(s)	569, 2207, 2318, 2955
GlaI	GCGC	4 cut(s)	164, 1305, 2193, 2624
GluI	GCNGC	8 cut(s)	153, 156, 213, 276, 1244, 1323, 1502, 3027
GsaI	CCCAGC	1 cut(s)	2294
GsuI	CTGGAG	1 cut(s)	1177
HaeII	RGCGCY	2 cut(s)	1307, 2626
HaeIII	GGCC	6 cut(s)	324, 366, 586, 1766, 2075, 2504
HapII	CCGG	2 cut(s)	1989, 2129
HhaI	GCGC	4 cut(s)	165, 1306, 2194, 2625
Hin6I	GCGC	4 cut(s)	163, 1304, 2192, 2623
HinP1I	GCGC	4 cut(s)	163, 1304, 2192, 2623
HincII	GTYRAC	1 cut(s)	2491
HindII	GTYRAC	1 cut(s)	2491
HpaI	GTTAAC	1 cut(s)	2491
HpaII	CCGG	2 cut(s)	1989, 2129
HphI	GGTGA	6 cut(s)	785, 881, 1792, 1808, 2282, 2563
Hpy166II	GTNNAC	7 cut(s)	123, 236, 462, 784, 2428, 2491, 2554
Hpy188I	TCNGA	6 cut(s)	55, 373, 536, 1471, 1730, 1753
Hpy8I	GTNNAC	7 cut(s)	123, 236, 462, 784, 2428, 2491, 2554
HpyCH4IV	ACGT	3 cut(s)	62, 2419, 2883
HpyF10VI	GCNNNNNNNGC	5 cut(s)	1595, 1865, 2200, 2458, 2960
HpySE526I	ACGT	3 cut(s)	62, 2419, 2883
HspAI	GCGC	4 cut(s)	163, 1304, 2192, 2623
Kpn2I	TCCGGA	1 cut(s)	2128
Ksp22I	TGATCA	1 cut(s)	1782
KspAI	GTTAAC	1 cut(s)	2491
LguI	GCTCTTC	1 cut(s)	1875
LmnI	GCTCC	5 cut(s)	593, 1158, 1705, 2527, 2576
Lsp1109I	GCAGC	6 cut(s)	139, 199, 1230, 1334, 1488, 3013
LweI	GCATC	6 cut(s)	1165, 1441, 1829, 1840, 2275, 3006
MabI	ACCWGGT	1 cut(s)	769
MaeI	CTAG	4 cut(s)	569, 2207, 2318, 2955
MaeII	ACGT	3 cut(s)	62, 2419, 2883
MfeI	CAATTG	2 cut(s)	1184, 2394
MflI	RGATCY	4 cut(s)	288, 308, 1924, 1975
MhlI	GDGCHC	6 cut(s)	50, 405, 598, 1735, 2524, 2581
MlsI	TGGCCA	2 cut(s)	586, 1766
MluNI	TGGCCA	2 cut(s)	586, 1766
MlyI	GAGTC	3 cut(s)	514, 1273, 2009
MmeI	TCCRAC	4 cut(s)	544, 1683, 1958, 2614
Mox20I	TGGCCA	2 cut(s)	586, 1766
Mph1103I	ATGCAT	1 cut(s)	1415
MroI	TCCGGA	1 cut(s)	2128
MroXI	GAANNNNTTC	3 cut(s)	507, 1642, 1803
MscI	TGGCCA	2 cut(s)	586, 1766
MslI	CAYNNNNRTG	4 cut(s)	1418, 2396, 2561, 2912
Msp20I	TGGCCA	2 cut(s)	586, 1766
MspA1I	CMGCKG	2 cut(s)	2024, 2461
MspI	CCGG	2 cut(s)	1989, 2129
MspR9I	CCNGG	3 cut(s)	771, 1989, 2222
MunI	CAATTG	2 cut(s)	1184, 2394
MvaI	CCWGG	2 cut(s)	771, 2222
MvnI	CGCG	2 cut(s)	2194, 2836
MwoI	GCNNNNNNNGC	5 cut(s)	1595, 1865, 2200, 2458, 2960
NciI	CCSGG	1 cut(s)	1989
NcoI	CCATGG	1 cut(s)	2322
NheI	GCTAGC	1 cut(s)	2954
NlaIV	GGNNCC	3 cut(s)	310, 1926, 1977
NmeAIII	GCCGAG	1 cut(s)	2480
NmuCI	GTSAC	7 cut(s)	245, 643, 1096, 1255, 1361, 1772, 2398
NsiI	ATGCAT	1 cut(s)	1415
NspV	TTCGAA	1 cut(s)	1873
OliI	CACNNNNGTG	2 cut(s)	2396, 2912
PagI	TCATGA	2 cut(s)	598, 2299
PciSI	GCTCTTC	1 cut(s)	1875
PdmI	GAANNNNTTC	3 cut(s)	507, 1642, 1803
PfeI	GAWTC	8 cut(s)	854, 1481, 1911, 2095, 2146, 2735, 2762, 3043
PflMI	CCANNNNNTGG	1 cut(s)	1940
PkrI	GCNGC	8 cut(s)	154, 157, 214, 277, 1245, 1324, 1503, 3028
PleI	GAGTC	3 cut(s)	514, 1272, 2008
PpsI	GAGTC	3 cut(s)	514, 1272, 2008
PshBI	ATTAAT	1 cut(s)	453
Psp124BI	GAGCTC	1 cut(s)	598
Psp1406I	AACGTT	1 cut(s)	62
Psp6I	CCWGG	2 cut(s)	769, 2220
PspEI	GGTNACC	1 cut(s)	955
PspFI	CCCAGC	1 cut(s)	2290
PspGI	CCWGG	2 cut(s)	769, 2220
PspN4I	GGNNCC	3 cut(s)	310, 1926, 1977
PspPI	GGNCC	4 cut(s)	2126, 2238, 2756, 2773
PstI	CTGCAG	1 cut(s)	814
PsuI	RGATCY	4 cut(s)	288, 308, 1924, 1975
PvuII	CAGCTG	2 cut(s)	2024, 2461
RsaI	GTAC	4 cut(s)	169, 237, 783, 807
RsaNI	GTAC	4 cut(s)	168, 236, 782, 806
RseI	CAYNNNNRTG	4 cut(s)	1418, 2396, 2561, 2912
SacI	GAGCTC	1 cut(s)	598
SapI	GCTCTTC	1 cut(s)	1875
SatI	GCNGC	8 cut(s)	153, 156, 213, 276, 1244, 1323, 1502, 3027
Sau96I	GGNCC	4 cut(s)	2126, 2238, 2756, 2773
SchI	GAGTC	3 cut(s)	514, 1273, 2009
ScrFI	CCNGG	3 cut(s)	771, 1989, 2222
SduI	GDGCHC	6 cut(s)	50, 405, 598, 1735, 2524, 2581
SexAI	ACCWGGT	1 cut(s)	769
SfaNI	GCATC	6 cut(s)	1165, 1441, 1829, 1840, 2275, 3006
SfcI	CTRYAG	2 cut(s)	674, 810
SfuI	TTCGAA	1 cut(s)	1873
SinI	GGWCC	4 cut(s)	2126, 2238, 2756, 2773
SmiMI	CAYNNNNRTG	4 cut(s)	1418, 2396, 2561, 2912
SmlI	CTYRAG	1 cut(s)	2233
SmoI	CTYRAG	1 cut(s)	2233
SsiI	CCGC	3 cut(s)	155, 275, 2627
SspI	AATATT	5 cut(s)	1512, 2059, 2473, 2677, 2742
SspMI	CTAG	4 cut(s)	569, 2207, 2318, 2955
SstI	GAGCTC	1 cut(s)	598
StyD4I	CCNGG	3 cut(s)	769, 1987, 2220
StyI	CCWWGG	2 cut(s)	1885, 2322
TaiI	ACGT	3 cut(s)	65, 2422, 2886
TaqI	TCGA	4 cut(s)	430, 1132, 1873, 2934
TatI	WGTACW	2 cut(s)	235, 781
TauI	GCSGC	2 cut(s)	158, 278
TfiI	GAWTC	8 cut(s)	854, 1481, 1911, 2095, 2146, 2735, 2762, 3043
TseFI	GTSAC	7 cut(s)	245, 643, 1096, 1255, 1361, 1772, 2398
TseI	GCWGC	6 cut(s)	152, 212, 1243, 1322, 1501, 3026
Tsp45I	GTSAC	7 cut(s)	245, 643, 1096, 1255, 1361, 1772, 2398
Van91I	CCANNNNNTGG	1 cut(s)	1940
VpaK11BI	GGWCC	4 cut(s)	2126, 2238, 2756, 2773
VspI	ATTAAT	1 cut(s)	453
XagI	CCTNNNNNAGG	1 cut(s)	1716
XapI	RAATTY	4 cut(s)	344, 2178, 2444, 2647
XbaI	TCTAGA	1 cut(s)	2206
XmnI	GAANNNNTTC	3 cut(s)	507, 1642, 1803
XspI	CTAG	4 cut(s)	569, 2207, 2318, 2955
Zsp2I	ATGCAT	1 cut(s)	1415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.