Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0011654

Physical Location & Seq

Genomic Coordinates Reverse (-)

13026164 .. 13032608

Gene Structure 6445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0148700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2085 bp

ATGGACTTAGACGACCTCGAAGGGCCGAGCAAGCCTGCTCGGGTCTCCAGGTTCATGCCCCGGTCCAAAAACGCCCCACCGAAACCGAAACCCGAACCCGCCGTCAAAAAGGAACCTGCAAAACCGGTCCCAAACTCCGAGCCGGAACCGCCGCAGCTGCTCAAGCCAAAGCCGGAAGCACTCGATGACGTGGCGGTTCTCGCAGTGCGGGAGAAGAAAGAAGAGAAGCAAGAAGAAGGCGCCAATGGAGATGATTCAAATGGCGCCGTGAAAATGGAGACCGATGGAGAAGCGAAGGAGGACGACGATCCTATGGAAGAAGACGACGCTGAAGACACCGTCGTTCGTGAAATTGACGTCTTCTTTAATCCTAGAGTCGATTCCAACACTCAGTTGTACGTTTTGCAATATCCTCTGAGGCCTCGGTGGCGGCCGTACGAGTTGGAGAATCGGTGCGAGGAGATAAGAGTGAAACCTGCCACTGCTGAAGTGGAGGTGGATTTGTCTCTAGATGTTTACTCGAAGAATTGTGATCAAGAGTTTGCTGACAGGCTCAAAATGACAAAGCAGACTTTGGCTACAGAATGGGATCCCTGCCGTTCAACTGGCTATGCCGTTGGGGTTTTGATGGGCAACAAGTTACACTTGAATCCTGTTCATGCAGTTGTGCAGCTCCGACCATCACTGGAGCATTTAAAGCCTGGTGGCTCAAAAAGGAAGGGCAAGGCCACAGGGGATGCAGAAGTTACTGTTAAAAGAGAGATTTATAGTGAGGAAAAATCTTTGGCTCCATCAAAGAAACAGAACAAGCGTGTGGAGTCCTCAACTGAAGATGAAGAGAGTTGGGTTCCACTTGAGTACCAGGGCTCAGAAAGTGATTTTTCAGCTAGATATTTAAAAAGAATGGTGGTACAAGAAAGTTCTCCTATAGAATTTACAATGACTCCGTATGACTATGTTAACTCCTTGTGTCCTAGAACGTGCAAAGGCTCTTCCAAAAGGGCTCTGCTAAACCTGCCTCTGGAGGAGCGTATCCAGAAGTTGCTTGTTGAGGAACCTATAGCTCGCCGGTTCAGTGATCTTAAGAAGTACTATGCTCCTCGTAACCAGGAAAAAGAACTTTTGGATGTCCTTCAAAAGCATGGTCTATTGCTGCGTGATCTTTGGGTTCCAAAAACTGCATTGCTATATCCCAAGAAAGAGGGCTCGTCTAGAAAGAAAGAGGATGACAATCTGCGTACAGCTAGAAATTACATTCTAAATTCATTTTGGAAGAACCCTGTAATTAGTTATTCAGAACTAAACGTCTACCCGCCACTAAAGCCTCATTTTGACGAAACCTTGAAAGTCTTAGCTGTCTACAGACCTTCGACTCGAGATTGGAAATTTAAAGGGCAATCAGACGTGTCATTTGCAGAACTCTATCCAGAGATTTCTGAAAGCCAGGAACAGATCTGGGAGAGGATGGATAAACAATTGGTGGAAGCCCTTAAGCCTCACCGTGATATGAAGAATGCTAGCATGACTAGTAAGATTGGGAAATCACCAAATTCTGATAAAGGTCCTAGTAAAAGTGCAAGTGGAGTTCCCAGTGGAGGAGTGAGAACCATGTCAGATGAAACCCGAGCAGCTCTACCTGATGCCATCAAAGAAGTTCTTCAGAAACACAAGGTTTGCAACTTTCAGCTGATATGTGATGGATTACGTCATTTGACAGTCGACAGAATGCAGCATCCAAAAGTTGATCCTAAGAGTAAAAAGTTAACAGCTGCAAGGAATGGCCTTGAGGCTCCTCCAGAAGAGCTGCAGAAAGTCATAACACAAGTTGCAGTGAACATTCATGGTTCATATGTCCTGATATCATCGCCAGACCACCCAGAGCATGATCAGTTAAGGGATGTTGTAATTAAACTTCTACAAGGTAAGAATAAAGGGCCACTTAAAAAGCTGGATGTTACTATAGCTGCTAAGGAGGAACTTGGGAGGGAAATCAGTAATAATGAATATAGCAAGGTCATGACTGAACTTTGTGTGTCTAAAGGTTCTCAATGGTACCTGAAAAGTGGGGATGGCGGGCCGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007275 GO:0008150 GO:0008324 GO:0009555 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0031984 GO:0032501 GO:0032502 GO:0034220 GO:0042175 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0098827 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase Hydrolase_3

Protein Analysis

694

Amino Acids

78.57

Weight (kDa)

6.9

Isoelectric Point (pI)

47.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPC5	PF04801	111 - 494	1.8e-87	RPC5 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22950 AT4G37640
fragaria_vesca	FvH4_1g17620
malus_domestica	MD02G1185000.v1.1 MD15G1296400.v1.1
prunus_persica	Prupe.6G221800_v2.0.a1 Prupe.6G221800_v2.0.a1
pyrus_communis	pycom02g14990 pycom15g25970
rosa_chinensis	RchiOBHm_Chr2g0107911
rosa_laevigata	RLG00000017627
rosa_multiflora	Rmu_sc0001484.1_g000032
rosa_roxburghii	Rroxscaffold_2G00135800
rosa_rugosa	Rorug02G0148700 Rorug02G0148800 Rorug02G0148800
rosa_samantha	Rh2BG210900 Rh2CG202700
rosa_wichuraiana	Rw2G015710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	360
Acc36I	ACCTGC	3 cut(s)	124, 484, 1023
Acc65I	GGTACC	1 cut(s)	2052
AccB1I	GGYRCC	3 cut(s)	239, 263, 2052
AccI	GTMKAC	3 cut(s)	1308, 1359, 1719
AciI	CCGC	8 cut(s)	99, 149, 152, 194, 208, 430, 1313, 2073
AclWI	GGATC	4 cut(s)	302, 584, 597, 1739
AcoI	YGGCCR	1 cut(s)	431
AcsI	RAATTY	4 cut(s)	932, 1261, 1385, 1549
AcuI	CTGAAG	4 cut(s)	351, 507, 849, 1643
AcyI	GRCGYC	3 cut(s)	240, 264, 357
AfaI	GTAC	7 cut(s)	398, 437, 860, 912, 1091, 1240, 2054
AfiI	CCNNNNNNNGG	2 cut(s)	1021, 1595
AflII	CTTAAG	2 cut(s)	1082, 1490
AflIII	ACRYGT	1 cut(s)	1404
AgeI	ACCGGT	1 cut(s)	124
AgsI	TTSAA	5 cut(s)	258, 603, 649, 1136, 1345
AhlI	ACTAGT	1 cut(s)	1526
AjiI	CACGTC	2 cut(s)	190, 1405
AjnI	CCWGG	5 cut(s)	47, 700, 861, 1107, 1443
Alw26I	GTCTC	3 cut(s)	49, 272, 510
AlwI	GGATC	4 cut(s)	302, 584, 597, 1739
Ama87I	CYCGRG	3 cut(s)	39, 1374, 1623
AoxI	GGCC	7 cut(s)	23, 419, 431, 726, 1780, 1934, 2075
ApeKI	GCWGC	9 cut(s)	154, 157, 670, 1153, 1628, 1729, 1769, 1804, 1964
ApoI	RAATTY	4 cut(s)	932, 1261, 1385, 1549
ArsI	GACNNNNNNTTYG	6 cut(s)	87, 119, 1129, 1161, 1394, 1426
AsiGI	ACCGGT	1 cut(s)	124
Asp700I	GAANNNNTTC	1 cut(s)	1656
Asp718I	GGTACC	1 cut(s)	2052
AspLEI	GCGC	2 cut(s)	242, 266
AspS9I	GGNCC	6 cut(s)	23, 63, 127, 1562, 1934, 2075
AsuC2I	CCSGG	1 cut(s)	61
AsuHPI	GGTGA	2 cut(s)	1490, 1536
AsuNHI	GCTAGC	1 cut(s)	1517
AvaI	CYCGRG	3 cut(s)	39, 1374, 1623
AvaII	GGWCC	3 cut(s)	63, 127, 1562
BaeI	ACNNNNGTAYC	2 cut(s)	842, 875
BamHI	GGATCC	1 cut(s)	589
BanI	GGYRCC	3 cut(s)	239, 263, 2052
BanII	GRGCYC	3 cut(s)	869, 1006, 1208
BarI	GAAGNNNNNNTAC	2 cut(s)	1896, 1928
BbsI	GAAGAC	3 cut(s)	327, 339, 352
BbvI	GCAGC	9 cut(s)	144, 166, 682, 1140, 1640, 1741, 1756, 1791, 1951
BccI	CCATC	8 cut(s)	278, 622, 688, 799, 1459, 1652, 1691, 2063
BceAI	ACGGC	5 cut(s)	86, 251, 418, 582, 599
BciT130I	CCWGG	5 cut(s)	49, 702, 863, 1109, 1445
BciVI	GTATCC	1 cut(s)	1043
BclI	TGATCA	2 cut(s)	532, 1885
BcnI	CCSGG	1 cut(s)	61
BcoDI	GTCTC	3 cut(s)	49, 272, 510
BcuI	ACTAGT	1 cut(s)	1526
BfaI	CTAG	9 cut(s)	372, 509, 888, 975, 1212, 1245, 1518, 1527, 1566
BfmI	CTRYAG	6 cut(s)	579, 927, 1059, 1360, 1805, 1959
BfoI	RGCGCY	2 cut(s)	243, 267
BfrI	CTTAAG	2 cut(s)	1082, 1490
BfuAI	ACCTGC	3 cut(s)	124, 484, 1023
BfuI	GTATCC	1 cut(s)	1043
BglI	GCCNNNNNGGC	1 cut(s)	427
BglII	AGATCT	1 cut(s)	1452
BmcAI	AGTACT	1 cut(s)	1091
Bme1390I	CCNGG	6 cut(s)	49, 61, 702, 863, 1109, 1445
Bme18I	GGWCC	3 cut(s)	63, 127, 1562
BmeT110I	CYCGRG	3 cut(s)	39, 1374, 1623
BmgBI	CACGTC	2 cut(s)	190, 1405
BmgT120I	GGNCC	6 cut(s)	23, 63, 127, 1562, 1934, 2075
BmrFI	CCNGG	6 cut(s)	49, 61, 702, 863, 1109, 1445
BmrI	ACTGGG	1 cut(s)	1584
BmsI	GCATC	3 cut(s)	727, 1630, 1741
BmtI	GCTAGC	1 cut(s)	1521
BmuI	ACTGGG	1 cut(s)	1584
BpiI	GAAGAC	3 cut(s)	327, 339, 352
BpmI	CTGGAG	4 cut(s)	31, 707, 1043, 1779
Bpu10I	CCTNAGC	1 cut(s)	1968
BpuEI	CTTGAG	3 cut(s)	146, 875, 1805
BpuMI	CCSGG	1 cut(s)	61
BsaBI	GATNNNNATC	1 cut(s)	1230
BsaHI	GRCGYC	3 cut(s)	240, 264, 357
BsaI	GGTCTC	2 cut(s)	49, 272
BsaJI	CCNNGG	3 cut(s)	59, 422, 862
BsaWI	WCCGGW	1 cut(s)	124
BsaXI	ACNNNNNCTCC	4 cut(s)	437, 467, 928, 958
Bsc4I	CCNNNNNNNGG	2 cut(s)	1021, 1595
Bse118I	RCCGGY	2 cut(s)	124, 1068
Bse1I	ACTGG	3 cut(s)	610, 690, 1590
Bse3DI	GCAATG	1 cut(s)	1181
Bse8I	GATNNNNATC	1 cut(s)	1230
BseBI	CCWGG	5 cut(s)	49, 702, 863, 1109, 1445
BseDI	CCNNGG	3 cut(s)	59, 422, 862
BseGI	GGATG	8 cut(s)	742, 1132, 1231, 1470, 1732, 1903, 1957, 2074
BseJI	GATNNNNATC	1 cut(s)	1230
BseLI	CCNNNNNNNGG	2 cut(s)	1021, 1595
BseMI	GCAATG	1 cut(s)	1181
BseMII	CTCAG	3 cut(s)	404, 407, 882
BseNI	ACTGG	3 cut(s)	610, 690, 1590
BseRI	GAGGAG	5 cut(s)	473, 1040, 1089, 1611, 1782
BseX3I	CGGCCG	1 cut(s)	431
BseXI	GCAGC	9 cut(s)	144, 166, 682, 1140, 1640, 1741, 1756, 1791, 1951
BsgI	GTGCAG	1 cut(s)	689
Bsh1285I	CGRYCG	1 cut(s)	434
BshFI	GGCC	7 cut(s)	25, 421, 433, 728, 1782, 1936, 2077
BshNI	GGYRCC	3 cut(s)	239, 263, 2052
BshTI	ACCGGT	1 cut(s)	124
BsiEI	CGRYCG	1 cut(s)	434
BsiHKCI	CYCGRG	3 cut(s)	39, 1374, 1623
BsiSI	CCGG	5 cut(s)	61, 125, 143, 173, 1069
BsiWI	CGTACG	1 cut(s)	435
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	2 cut(s)	1021, 1595
BsmAI	GTCTC	3 cut(s)	49, 272, 510
BsmFI	GGGAC	1 cut(s)	113
BsmI	GAATGC	2 cut(s)	1519, 1731
BsnI	GGCC	7 cut(s)	25, 421, 433, 728, 1782, 1936, 2077
Bso31I	GGTCTC	2 cut(s)	49, 272
BsoBI	CYCGRG	3 cut(s)	39, 1374, 1623
Bsp1286I	GDGCHC	3 cut(s)	869, 1006, 1208
Bsp143I	GATC	8 cut(s)	307, 532, 589, 1078, 1159, 1452, 1744, 1885
BspACI	CCGC	8 cut(s)	99, 149, 152, 194, 208, 430, 1313, 2073
BspANI	GGCC	7 cut(s)	25, 421, 433, 728, 1782, 1936, 2077
BspCNI	CTCAG	3 cut(s)	403, 408, 881
BspHI	TCATGA	1 cut(s)	2016
BspMAI	CTGCAG	1 cut(s)	1809
BspMI	ACCTGC	3 cut(s)	124, 484, 1023
BspOI	GCTAGC	1 cut(s)	1521
BspPI	GGATC	4 cut(s)	302, 584, 597, 1739
BspQI	GCTCTTC	2 cut(s)	997, 1794
BspT107I	GGYRCC	3 cut(s)	239, 263, 2052
BspTI	CTTAAG	2 cut(s)	1082, 1490
BspTNI	GGTCTC	2 cut(s)	49, 272
BsrDI	GCAATG	1 cut(s)	1181
BsrFI	RCCGGY	2 cut(s)	124, 1068
BsrI	ACTGG	3 cut(s)	610, 690, 1590
BssAI	RCCGGY	2 cut(s)	124, 1068
BssECI	CCNNGG	3 cut(s)	59, 422, 862
BssMI	GATC	8 cut(s)	307, 532, 589, 1078, 1159, 1452, 1744, 1885
BssNI	GRCGYC	3 cut(s)	240, 264, 357
Bst2UI	CCWGG	5 cut(s)	49, 702, 863, 1109, 1445
Bst4CI	ACNGT	4 cut(s)	340, 751, 1502, 1717
Bst6I	CTCTTC	4 cut(s)	216, 831, 997, 1794
BstACI	GRCGYC	3 cut(s)	240, 264, 357
BstAFI	CTTAAG	2 cut(s)	1082, 1490
BstC8I	GCNNGC	5 cut(s)	32, 36, 1066, 1519, 2075
BstDEI	CTNAG	7 cut(s)	7, 390, 416, 868, 1351, 1749, 1968
BstF5I	GGATG	8 cut(s)	742, 1132, 1231, 1470, 1732, 1903, 1957, 2074
BstH2I	RGCGCY	2 cut(s)	243, 267
BstHHI	GCGC	2 cut(s)	242, 266
BstKTI	GATC	8 cut(s)	310, 535, 592, 1081, 1162, 1455, 1747, 1888
BstMAI	GTCTC	3 cut(s)	49, 272, 510
BstMBI	GATC	8 cut(s)	307, 532, 589, 1078, 1159, 1452, 1744, 1885
BstMCI	CGRYCG	1 cut(s)	434
BstMWI	GCNNNNNNNGC	9 cut(s)	31, 148, 157, 163, 200, 427, 697, 1015, 1321
BstNI	CCWGG	5 cut(s)	49, 702, 863, 1109, 1445
BstSCI	CCNGG	6 cut(s)	47, 59, 700, 861, 1107, 1443
BstSFI	CTRYAG	6 cut(s)	579, 927, 1059, 1360, 1805, 1959
BstV1I	GCAGC	9 cut(s)	144, 166, 682, 1140, 1640, 1741, 1756, 1791, 1951
BstV2I	GAAGAC	3 cut(s)	327, 339, 352
BstX2I	RGATCY	2 cut(s)	589, 1452
BstYI	RGATCY	2 cut(s)	589, 1452
BstZI	CGGCCG	1 cut(s)	431
BsuI	GTATCC	1 cut(s)	1043
BsuRI	GGCC	7 cut(s)	25, 421, 433, 728, 1782, 1936, 2077
BtgZI	GCGATG	1 cut(s)	1848
BtrI	CACGTC	2 cut(s)	190, 1405
BtsCI	GGATG	8 cut(s)	742, 1132, 1231, 1470, 1732, 1903, 1957, 2074
BtsI	GCAGTG	3 cut(s)	210, 480, 1836
BtsIMutI	CAGTG	6 cut(s)	210, 480, 683, 1081, 1597, 1836
BveI	ACCTGC	3 cut(s)	124, 484, 1023
Cac8I	GCNNGC	5 cut(s)	32, 36, 1066, 1519, 2075
CciI	TCATGA	1 cut(s)	2016
CfoI	GCGC	2 cut(s)	242, 266
Cfr10I	RCCGGY	2 cut(s)	124, 1068
Cfr13I	GGNCC	6 cut(s)	23, 63, 127, 1562, 1934, 2075
CseI	GACGC	1 cut(s)	335
Csp6I	GTAC	7 cut(s)	397, 436, 859, 911, 1090, 1239, 2053
CspAI	ACCGGT	1 cut(s)	124
CviAII	CATG	8 cut(s)	55, 659, 1142, 1522, 1609, 1841, 1883, 2017
CviQI	GTAC	7 cut(s)	397, 436, 859, 911, 1090, 1239, 2053
DdeI	CTNAG	7 cut(s)	7, 390, 416, 868, 1351, 1749, 1968
DinI	GGCGCC	2 cut(s)	241, 265
DpnI	GATC	8 cut(s)	309, 534, 591, 1080, 1161, 1454, 1746, 1887
DpnII	GATC	8 cut(s)	307, 532, 589, 1078, 1159, 1452, 1744, 1885
DraI	TTTAAA	3 cut(s)	696, 897, 1390
EaeI	YGGCCR	1 cut(s)	431
EagI	CGGCCG	1 cut(s)	431
Eam1104I	CTCTTC	4 cut(s)	216, 831, 997, 1794
EarI	CTCTTC	4 cut(s)	216, 831, 997, 1794
EclXI	CGGCCG	1 cut(s)	431
Eco147I	AGGCCT	1 cut(s)	421
Eco24I	GRGCYC	3 cut(s)	869, 1006, 1208
Eco31I	GGTCTC	2 cut(s)	49, 272
Eco32I	GATATC	1 cut(s)	1860
Eco47I	GGWCC	3 cut(s)	63, 127, 1562
Eco52I	CGGCCG	1 cut(s)	431
Eco57I	CTGAAG	4 cut(s)	351, 507, 849, 1643
Eco88I	CYCGRG	3 cut(s)	39, 1374, 1623
EcoO109I	RGGNCCY	1 cut(s)	1562
EcoRII	CCWGG	5 cut(s)	47, 700, 861, 1107, 1443
EcoRV	GATATC	1 cut(s)	1860
EcoT38I	GRGCYC	3 cut(s)	869, 1006, 1208
EgeI	GGCGCC	2 cut(s)	241, 265
EheI	GGCGCC	2 cut(s)	241, 265
FaeI	CATG	8 cut(s)	58, 662, 1145, 1525, 1612, 1844, 1886, 2020
FalI	AAGNNNNNCTT	6 cut(s)	629, 661, 1641, 1673, 1923, 1955
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	8 cut(s)	54, 658, 1141, 1521, 1608, 1840, 1882, 2016
FauI	CCCGC	4 cut(s)	106, 201, 1320, 2066
FauNDI	CATATG	1 cut(s)	1849
FbaI	TGATCA	2 cut(s)	532, 1885
FblI	GTMKAC	3 cut(s)	1308, 1359, 1719
FokI	GGATG	8 cut(s)	749, 1139, 1238, 1477, 1719, 1910, 1964, 2081
FriOI	GRGCYC	3 cut(s)	869, 1006, 1208
FspBI	CTAG	9 cut(s)	372, 509, 888, 975, 1212, 1245, 1518, 1527, 1566
GlaI	GCGC	2 cut(s)	241, 265
GsuI	CTGGAG	4 cut(s)	31, 707, 1043, 1779
HaeII	RGCGCY	2 cut(s)	243, 267
HaeIII	GGCC	7 cut(s)	25, 421, 433, 728, 1782, 1936, 2077
HapII	CCGG	5 cut(s)	61, 125, 143, 173, 1069
HgaI	GACGC	1 cut(s)	335
HhaI	GCGC	2 cut(s)	242, 266
Hin1I	GRCGYC	3 cut(s)	240, 264, 357
Hin1II	CATG	8 cut(s)	58, 662, 1145, 1525, 1612, 1844, 1886, 2020
Hin6I	GCGC	2 cut(s)	240, 264
HinP1I	GCGC	2 cut(s)	240, 264
HincII	GTYRAC	3 cut(s)	961, 1720, 1764
HindII	GTYRAC	3 cut(s)	961, 1720, 1764
HinfI	GANTC	8 cut(s)	254, 375, 380, 448, 649, 818, 943, 1372
HpaI	GTTAAC	2 cut(s)	961, 1764
HpaII	CCGG	5 cut(s)	61, 125, 143, 173, 1069
HphI	GGTGA	2 cut(s)	1490, 1536
Hpy166II	GTNNAC	7 cut(s)	517, 961, 1309, 1360, 1720, 1764, 1834
Hpy8I	GTNNAC	7 cut(s)	517, 961, 1309, 1360, 1720, 1764, 1834
Hpy99I	CGWCG	3 cut(s)	308, 329, 344
HpyAV	CCTTC	6 cut(s)	14, 230, 289, 712, 1142, 1377
HpyCH4III	ACNGT	4 cut(s)	340, 751, 1502, 1717
HpyCH4IV	ACGT	7 cut(s)	189, 357, 399, 980, 1305, 1404, 1705
HpyF10VI	GCNNNNNNNGC	9 cut(s)	31, 148, 157, 163, 200, 427, 697, 1015, 1321
HpyF3I	CTNAG	7 cut(s)	7, 390, 416, 868, 1351, 1749, 1968
HpySE526I	ACGT	7 cut(s)	189, 357, 399, 980, 1305, 1404, 1705
Hsp92I	GRCGYC	3 cut(s)	240, 264, 357
Hsp92II	CATG	8 cut(s)	58, 662, 1145, 1525, 1612, 1844, 1886, 2020
HspAI	GCGC	2 cut(s)	240, 264
KasI	GGCGCC	2 cut(s)	239, 263
KpnI	GGTACC	1 cut(s)	2056
Ksp22I	TGATCA	2 cut(s)	532, 1885
KspAI	GTTAAC	2 cut(s)	961, 1764
Kzo9I	GATC	8 cut(s)	307, 532, 589, 1078, 1159, 1452, 1744, 1885
LguI	GCTCTTC	2 cut(s)	997, 1794
LmnI	GCTCC	6 cut(s)	678, 688, 793, 1027, 1102, 1795
Lsp1109I	GCAGC	9 cut(s)	144, 166, 682, 1140, 1640, 1741, 1756, 1791, 1951
LweI	GCATC	3 cut(s)	727, 1630, 1741
MaeI	CTAG	9 cut(s)	372, 509, 888, 975, 1212, 1245, 1518, 1527, 1566
MaeII	ACGT	7 cut(s)	189, 357, 399, 980, 1305, 1404, 1705
MaeIII	GTNAC	4 cut(s)	639, 745, 1103, 1954
MalI	GATC	8 cut(s)	309, 534, 591, 1080, 1161, 1454, 1746, 1887
MboI	GATC	8 cut(s)	307, 532, 589, 1078, 1159, 1452, 1744, 1885
MfeI	CAATTG	1 cut(s)	1475
MflI	RGATCY	2 cut(s)	589, 1452
MhlI	GDGCHC	3 cut(s)	869, 1006, 1208
Mly113I	GGCGCC	2 cut(s)	240, 264
MlyI	GAGTC	4 cut(s)	384, 827, 937, 1366
MmeI	TCCRAC	3 cut(s)	408, 423, 700
MroXI	GAANNNNTTC	1 cut(s)	1656
MspA1I	CMGCKG	3 cut(s)	157, 1687, 1769
MspCI	CTTAAG	2 cut(s)	1082, 1490
MspI	CCGG	5 cut(s)	61, 125, 143, 173, 1069
MspR9I	CCNGG	6 cut(s)	49, 61, 702, 863, 1109, 1445
MunI	CAATTG	1 cut(s)	1475
Mva1269I	GAATGC	2 cut(s)	1519, 1731
MvaI	CCWGG	5 cut(s)	49, 702, 863, 1109, 1445
MwoI	GCNNNNNNNGC	9 cut(s)	31, 148, 157, 163, 200, 427, 697, 1015, 1321
NarI	GGCGCC	2 cut(s)	240, 264
NciI	CCSGG	1 cut(s)	61
NdeI	CATATG	1 cut(s)	1849
NdeII	GATC	8 cut(s)	307, 532, 589, 1078, 1159, 1452, 1744, 1885
NheI	GCTAGC	1 cut(s)	1517
NlaIII	CATG	8 cut(s)	58, 662, 1145, 1525, 1612, 1844, 1886, 2020
NmeAIII	GCCGAG	1 cut(s)	51
PaeR7I	CTCGAG	1 cut(s)	1374
PagI	TCATGA	1 cut(s)	2016
PceI	AGGCCT	1 cut(s)	421
PciSI	GCTCTTC	2 cut(s)	997, 1794
PctI	GAATGC	2 cut(s)	1519, 1731
PdmI	GAANNNNTTC	1 cut(s)	1656
PfeI	GAWTC	4 cut(s)	254, 380, 448, 649
Pfl23II	CGTACG	1 cut(s)	435
PflFI	GACNNNGTC	1 cut(s)	338
PinAI	ACCGGT	1 cut(s)	124
PleI	GAGTC	4 cut(s)	383, 826, 937, 1366
PluTI	GGCGCC	2 cut(s)	243, 267
PpsI	GAGTC	4 cut(s)	383, 826, 937, 1366
PpuMI	RGGWCCY	1 cut(s)	1562
Psp5II	RGGWCCY	1 cut(s)	1562
Psp6I	CCWGG	5 cut(s)	47, 700, 861, 1107, 1443
PspGI	CCWGG	5 cut(s)	47, 700, 861, 1107, 1443
PspLI	CGTACG	1 cut(s)	435
PspPI	GGNCC	6 cut(s)	23, 63, 127, 1562, 1934, 2075
PspPPI	RGGWCCY	1 cut(s)	1562
PstI	CTGCAG	1 cut(s)	1809
PsuI	RGATCY	2 cut(s)	589, 1452
PsyI	GACNNNGTC	1 cut(s)	338
PvuII	CAGCTG	3 cut(s)	157, 1687, 1769
RsaI	GTAC	7 cut(s)	398, 437, 860, 912, 1091, 1240, 2054
RsaNI	GTAC	7 cut(s)	397, 436, 859, 911, 1090, 1239, 2053
SalI	GTCGAC	1 cut(s)	1718
SapI	GCTCTTC	2 cut(s)	997, 1794
Sau3AI	GATC	8 cut(s)	307, 532, 589, 1078, 1159, 1452, 1744, 1885
Sau96I	GGNCC	6 cut(s)	23, 63, 127, 1562, 1934, 2075
ScaI	AGTACT	1 cut(s)	1091
SchI	GAGTC	4 cut(s)	384, 827, 937, 1366
ScrFI	CCNGG	6 cut(s)	49, 61, 702, 863, 1109, 1445
SduI	GDGCHC	3 cut(s)	869, 1006, 1208
SfaNI	GCATC	3 cut(s)	727, 1630, 1741
SfcI	CTRYAG	6 cut(s)	579, 927, 1059, 1360, 1805, 1959
SfoI	GGCGCC	2 cut(s)	241, 265
Sfr274I	CTCGAG	1 cut(s)	1374
SinI	GGWCC	3 cut(s)	63, 127, 1562
SlaI	CTCGAG	1 cut(s)	1374
SmlI	CTYRAG	6 cut(s)	161, 854, 1082, 1374, 1490, 1784
SmoI	CTYRAG	6 cut(s)	161, 854, 1082, 1374, 1490, 1784
SpeI	ACTAGT	1 cut(s)	1526
SseBI	AGGCCT	1 cut(s)	421
SsiI	CCGC	8 cut(s)	99, 149, 152, 194, 208, 430, 1313, 2073
SspDI	GGCGCC	2 cut(s)	239, 263
SspMI	CTAG	9 cut(s)	372, 509, 888, 975, 1212, 1245, 1518, 1527, 1566
StuI	AGGCCT	1 cut(s)	421
StyD4I	CCNGG	6 cut(s)	47, 59, 700, 861, 1107, 1443
TaaI	ACNGT	4 cut(s)	340, 751, 1502, 1717
TaiI	ACGT	7 cut(s)	192, 360, 402, 983, 1308, 1407, 1708
TaqI	TCGA	7 cut(s)	18, 183, 378, 521, 1370, 1375, 1719
TaqII	GACCGA	1 cut(s)	296
TatI	WGTACW	1 cut(s)	1089
TauI	GCSGC	2 cut(s)	154, 433
TfiI	GAWTC	4 cut(s)	254, 380, 448, 649
TscAI	CASTG	6 cut(s)	210, 487, 690, 1081, 1597, 1836
TseI	GCWGC	9 cut(s)	154, 157, 670, 1153, 1628, 1729, 1769, 1804, 1964
TspDTI	ATGAA	9 cut(s)	43, 647, 849, 1254, 1523, 1632, 1829, 1836, 2016
TspGWI	ACGGA	1 cut(s)	936
TspRI	CASTG	6 cut(s)	210, 487, 690, 1081, 1597, 1836
Tth111I	GACNNNGTC	1 cut(s)	338
Vha464I	CTTAAG	2 cut(s)	1082, 1490
VpaK11BI	GGWCC	3 cut(s)	63, 127, 1562
XapI	RAATTY	4 cut(s)	932, 1261, 1385, 1549
XbaI	TCTAGA	2 cut(s)	508, 1211
XcmI	CCANNNNNNNNNTGG	1 cut(s)	487
XhoI	CTCGAG	1 cut(s)	1374
XmiI	GTMKAC	3 cut(s)	1308, 1359, 1719
XmnI	GAANNNNTTC	1 cut(s)	1656
XspI	CTAG	9 cut(s)	372, 509, 888, 975, 1212, 1245, 1518, 1527, 1566
ZraI	GACGTC	1 cut(s)	358
ZrmI	AGTACT	1 cut(s)	1091

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.