Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0013215

Physical Location & Seq

Genomic Coordinates Reverse (-)

45953047 .. 45953394

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019075

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGAGGCCATTGCTTTCAGTGACCAAGTCCACAACAACAAAGAGAACATGCCCCCATTTTTCTCTGCAAATGCAAAGCTGAGCAAGAACCCAGTTCCTGAAAGTGGGTCTTCTACCAAGAAATGTAAGAAAACTATAAGGCTGAAGAGGAAGCCTCTTGCTGACATCACCAATCTCTACCAATCAAGGCTGCCTCTGCCTCTTCCAAGCGGAACTCTTGGACCCTCTTCATCTGTTTCAGTCCCTGCAGCTTTATACTCAAGGAAAAGGAAAGCAAATTCCCATGAGAATGAGAATGAGAATGAGACCAGCTCCAACTCCAGGTCGCTAAGGATGGGTTTCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

116

Amino Acids

12.72

Weight (kDa)

10.2

Isoelectric Point (pI)

60.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18501
fragaria_vesca	FvH4_6g27240 FvH4_6g27260
pyrus_communis	pycom09g15710
rosa_chinensis	RchiOBHm_Chr2g0129371
rosa_laevigata	RLG00000019074 RLG00000019075
rosa_roxburghii	Rroxscaffold_2G00114670 Rroxscaffold_2G00114690
rosa_samantha	Rh2AG338300 Rh2BG345900 Rh2BG346300 Rh2BG346400 Rh2CG325800 Rh2DG363400 Rh2DG364100 Rh2DG364200
rosa_wichuraiana	Rw0G002970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	210
AcsI	RAATTY	1 cut(s)	277
AcuI	CTGAAG	1 cut(s)	164
AfiI	CCNNNNNNNGG	2 cut(s)	104, 321
AjnI	CCWGG	1 cut(s)	320
AluBI	AGCT	3 cut(s)	79, 251, 312
AluI	AGCT	3 cut(s)	79, 251, 312
Alw26I	GTCTC	1 cut(s)	299
AlwNI	CAGNNNCTG	2 cut(s)	98, 245
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	2 cut(s)	190, 248
ApoI	RAATTY	1 cut(s)	277
AspS9I	GGNCC	1 cut(s)	221
AsuHPI	GGTGA	1 cut(s)	160
AvaII	GGWCC	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	102
BbvI	GCAGC	2 cut(s)	177, 260
BccI	CCATC	1 cut(s)	328
BciT130I	CCWGG	1 cut(s)	322
BcoDI	GTCTC	1 cut(s)	299
BfmI	CTRYAG	1 cut(s)	246
BisI	GCNGC	2 cut(s)	191, 249
BlpI	GCTNAGC	1 cut(s)	80
BlsI	GCNGC	2 cut(s)	192, 250
Bme1390I	CCNGG	1 cut(s)	322
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	1 cut(s)	223
BmrFI	CCNGG	1 cut(s)	322
BmrI	ACTGGG	1 cut(s)	86
BmuI	ACTGGG	1 cut(s)	86
BpiI	GAAGAC	1 cut(s)	102
BplI	GAGNNNNNCTC	4 cut(s)	139, 171, 296, 328
BpmI	CTGGAG	1 cut(s)	304
Bpu10I	CCTNAGC	1 cut(s)	329
Bpu1102I	GCTNAGC	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	244
BsaI	GGTCTC	1 cut(s)	299
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 321
Bse1I	ACTGG	1 cut(s)	92
Bse3DI	GCAATG	1 cut(s)	9
BseBI	CCWGG	1 cut(s)	322
BseGI	GGATG	1 cut(s)	339
BseLI	CCNNNNNNNGG	2 cut(s)	104, 321
BseMI	GCAATG	1 cut(s)	9
BseMII	CTCAG	1 cut(s)	71
BseNI	ACTGG	1 cut(s)	92
BseXI	GCAGC	2 cut(s)	177, 260
BshFI	GGCC	1 cut(s)	8
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	2 cut(s)	104, 321
BsmAI	GTCTC	1 cut(s)	299
BsmFI	GGGAC	1 cut(s)	227
BsnI	GGCC	1 cut(s)	8
Bso31I	GGTCTC	1 cut(s)	299
Bsp1720I	GCTNAGC	1 cut(s)	80
BspACI	CCGC	1 cut(s)	210
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	1 cut(s)	72
BspLI	GGNNCC	1 cut(s)	223
BspMAI	CTGCAG	1 cut(s)	250
BspTNI	GGTCTC	1 cut(s)	299
BsrDI	GCAATG	1 cut(s)	9
BsrI	ACTGG	1 cut(s)	92
Bst2UI	CCWGG	1 cut(s)	322
Bst6I	CTCTTC	3 cut(s)	140, 207, 232
BstDEI	CTNAG	2 cut(s)	80, 329
BstF5I	GGATG	1 cut(s)	339
BstMAI	GTCTC	1 cut(s)	299
BstMWI	GCNNNNNNNGC	1 cut(s)	196
BstNI	CCWGG	1 cut(s)	322
BstNSI	RCATGY	1 cut(s)	52
BstSCI	CCNGG	1 cut(s)	320
BstSFI	CTRYAG	1 cut(s)	246
BstV1I	GCAGC	2 cut(s)	177, 260
BstV2I	GAAGAC	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	8
BtsCI	GGATG	1 cut(s)	339
BtsIMutI	CAGTG	1 cut(s)	25
CaiI	CAGNNNCTG	2 cut(s)	98, 245
Cfr13I	GGNCC	1 cut(s)	221
CviAII	CATG	2 cut(s)	49, 284
CviJI	RGCY	7 cut(s)	8, 79, 142, 154, 190, 251, 312
CviKI_1	RGCY	7 cut(s)	8, 79, 142, 154, 190, 251, 312
DdeI	CTNAG	2 cut(s)	80, 329
Eam1104I	CTCTTC	3 cut(s)	140, 207, 232
EarI	CTCTTC	3 cut(s)	140, 207, 232
Eco31I	GGTCTC	1 cut(s)	299
Eco47I	GGWCC	1 cut(s)	221
Eco57I	CTGAAG	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	320
FaeI	CATG	2 cut(s)	52, 287
FaiI	YATR	4 cut(s)	50, 137, 256, 285
FalI	AAGNNNNNCTT	2 cut(s)	94, 126
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	2 cut(s)	48, 283
Fnu4HI	GCNGC	2 cut(s)	191, 249
Fsp4HI	GCNGC	2 cut(s)	191, 249
GluI	GCNGC	2 cut(s)	191, 249
GsuI	CTGGAG	1 cut(s)	304
HaeIII	GGCC	1 cut(s)	8
Hin1II	CATG	2 cut(s)	52, 287
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	1 cut(s)	344
Hpy188III	TCNNGA	1 cut(s)	98
Hpy8I	GTNNAC	1 cut(s)	31
HpyCH4V	TGCA	3 cut(s)	68, 74, 248
HpyF10VI	GCNNNNNNNGC	1 cut(s)	196
HpyF3I	CTNAG	2 cut(s)	80, 329
Hsp92II	CATG	2 cut(s)	52, 287
LmnI	GCTCC	1 cut(s)	317
LpnPI	CCDG	6 cut(s)	105, 111, 258, 307, 322, 334
Lsp1109I	GCAGC	2 cut(s)	177, 260
MaeIII	GTNAC	1 cut(s)	20
MboII	GAAGA	4 cut(s)	102, 157, 194, 219
MluCI	AATT	1 cut(s)	277
MmeI	TCCRAC	1 cut(s)	339
MnlI	CCTC	5 cut(s)	141, 165, 204, 210, 235
MslI	CAYNNNNRTG	1 cut(s)	288
MspR9I	CCNGG	1 cut(s)	322
MvaI	CCWGG	1 cut(s)	322
MwoI	GCNNNNNNNGC	1 cut(s)	196
NlaIII	CATG	2 cut(s)	52, 287
NlaIV	GGNNCC	1 cut(s)	223
NmuCI	GTSAC	1 cut(s)	20
NspI	RCATGY	1 cut(s)	52
PflFI	GACNNNGTC	1 cut(s)	26
PkrI	GCNGC	2 cut(s)	192, 250
Psp6I	CCWGG	1 cut(s)	320
PspGI	CCWGG	1 cut(s)	320
PspN4I	GGNNCC	1 cut(s)	223
PspPI	GGNCC	1 cut(s)	221
PstI	CTGCAG	1 cut(s)	250
PstNI	CAGNNNCTG	2 cut(s)	98, 245
PsyI	GACNNNGTC	1 cut(s)	26
RseI	CAYNNNNRTG	1 cut(s)	288
SatI	GCNGC	2 cut(s)	191, 249
Sau96I	GGNCC	1 cut(s)	221
ScrFI	CCNGG	1 cut(s)	322
SetI	ASST	4 cut(s)	81, 253, 314, 326
SfcI	CTRYAG	1 cut(s)	246
SinI	GGWCC	1 cut(s)	221
SmiMI	CAYNNNNRTG	1 cut(s)	288
SmlI	CTYRAG	1 cut(s)	259
SmoI	CTYRAG	1 cut(s)	259
Sse9I	AATT	1 cut(s)	277
SsiI	CCGC	1 cut(s)	210
StyD4I	CCNGG	1 cut(s)	320
TasI	AATT	1 cut(s)	277
TscAI	CASTG	1 cut(s)	25
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	2 cut(s)	190, 248
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	1 cut(s)	219
TspRI	CASTG	1 cut(s)	25
Tth111I	GACNNNGTC	1 cut(s)	26
VpaK11BI	GGWCC	1 cut(s)	221
XapI	RAATTY	1 cut(s)	277
XceI	RCATGY	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.