Rroxscaffold_2G00114670

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0013215
Physical Location & Seq
Forward (+)
40838075 .. 40838416
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00114670.1

Sequence Viewer

Length: 342 bp
ATGGAGGCCATTGCTTTCAGTGACCAAGTCCACAACAACAAAGAGAACATCCCCCCATTTTTCTCTGCAAATGCAAAGCTGAGCAAGAACTCAGTTCCTGAAAGTGGATCTTCTACCCAGAAATGTAAGAAAACTATAAGGCTGAAGAGGAAGCCTCTTGCTGACATCACCAATCTCTACCAATCAAGGCTGCCTCTGCCTCTTCCAAGCGGAACTCTTAGACCCTCTTCATCTGTTTCAGTCCCTGCAGCTTTATACTCAAGGAAAAGGAAAGCAAATTCCCATGAGAATGAGAATGAGACCAGCTCCAACTCCAGGTCGCTAAGGATGGGTTTCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.55

Weight (kDa)

10.44

Isoelectric Point (pI)

62.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 210
AclWI GGATC 1 cut(s) 115
AcsI RAATTY 1 cut(s) 277
AcuI CTGAAG 1 cut(s) 164
AfiI CCNNNNNNNGG 2 cut(s) 104, 315
AjnI CCWGG 1 cut(s) 314
AluBI AGCT 3 cut(s) 79, 251, 306
AluI AGCT 3 cut(s) 79, 251, 306
Alw26I GTCTC 1 cut(s) 293
AlwI GGATC 1 cut(s) 115
AlwNI CAGNNNCTG 2 cut(s) 98, 245
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 2 cut(s) 190, 248
ApoI RAATTY 1 cut(s) 277
AsuHPI GGTGA 1 cut(s) 160
BbvI GCAGC 2 cut(s) 177, 260
BccI CCATC 1 cut(s) 322
BciT130I CCWGG 1 cut(s) 316
BcoDI GTCTC 1 cut(s) 293
BfmI CTRYAG 1 cut(s) 246
BisI GCNGC 2 cut(s) 191, 249
BlpI GCTNAGC 1 cut(s) 80
BlsI GCNGC 2 cut(s) 192, 250
Bme1390I CCNGG 1 cut(s) 316
BmrFI CCNGG 1 cut(s) 316
BplI GAGNNNNNCTC 4 cut(s) 139, 171, 290, 322
BpmI CTGGAG 1 cut(s) 298
Bpu10I CCTNAGC 1 cut(s) 323
Bpu1102I GCTNAGC 1 cut(s) 80
BpuEI CTTGAG 1 cut(s) 244
BsaI GGTCTC 1 cut(s) 293
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 315
Bse3DI GCAATG 1 cut(s) 9
BseBI CCWGG 1 cut(s) 316
BseGI GGATG 2 cut(s) 48, 333
BseLI CCNNNNNNNGG 2 cut(s) 104, 315
BseMI GCAATG 1 cut(s) 9
BseMII CTCAG 2 cut(s) 71, 105
BseXI GCAGC 2 cut(s) 177, 260
BshFI GGCC 1 cut(s) 8
BslFI GGGAC 1 cut(s) 227
BslI CCNNNNNNNGG 2 cut(s) 104, 315
BsmAI GTCTC 1 cut(s) 293
BsmFI GGGAC 1 cut(s) 227
BsnI GGCC 1 cut(s) 8
Bso31I GGTCTC 1 cut(s) 293
Bsp143I GATC 1 cut(s) 107
Bsp1720I GCTNAGC 1 cut(s) 80
BspACI CCGC 1 cut(s) 210
BspANI GGCC 1 cut(s) 8
BspCNI CTCAG 2 cut(s) 72, 104
BspMAI CTGCAG 1 cut(s) 250
BspPI GGATC 1 cut(s) 115
BspTNI GGTCTC 1 cut(s) 293
BsrDI GCAATG 1 cut(s) 9
BssMI GATC 1 cut(s) 107
Bst2UI CCWGG 1 cut(s) 316
Bst6I CTCTTC 3 cut(s) 140, 207, 232
BstDEI CTNAG 4 cut(s) 80, 91, 218, 323
BstF5I GGATG 2 cut(s) 48, 333
BstKTI GATC 1 cut(s) 110
BstMAI GTCTC 1 cut(s) 293
BstMBI GATC 1 cut(s) 107
BstMWI GCNNNNNNNGC 1 cut(s) 196
BstNI CCWGG 1 cut(s) 316
BstSCI CCNGG 1 cut(s) 314
BstSFI CTRYAG 1 cut(s) 246
BstV1I GCAGC 2 cut(s) 177, 260
BstX2I RGATCY 1 cut(s) 107
BstYI RGATCY 1 cut(s) 107
BsuRI GGCC 1 cut(s) 8
BtsCI GGATG 2 cut(s) 48, 333
BtsIMutI CAGTG 1 cut(s) 25
CaiI CAGNNNCTG 2 cut(s) 98, 245
CviAII CATG 1 cut(s) 284
CviJI RGCY 7 cut(s) 8, 79, 142, 154, 190, 251, 306
CviKI_1 RGCY 7 cut(s) 8, 79, 142, 154, 190, 251, 306
DdeI CTNAG 4 cut(s) 80, 91, 218, 323
DpnI GATC 1 cut(s) 109
DpnII GATC 1 cut(s) 107
Eam1104I CTCTTC 3 cut(s) 140, 207, 232
EarI CTCTTC 3 cut(s) 140, 207, 232
Eco31I GGTCTC 1 cut(s) 293
Eco57I CTGAAG 1 cut(s) 164
EcoRII CCWGG 1 cut(s) 314
FaeI CATG 1 cut(s) 287
FaiI YATR 3 cut(s) 137, 256, 285
FalI AAGNNNNNCTT 2 cut(s) 94, 126
FaqI GGGAC 1 cut(s) 227
FatI CATG 1 cut(s) 283
Fnu4HI GCNGC 2 cut(s) 191, 249
FokI GGATG 1 cut(s) 35
Fsp4HI GCNGC 2 cut(s) 191, 249
GluI GCNGC 2 cut(s) 191, 249
GsuI CTGGAG 1 cut(s) 298
HaeIII GGCC 1 cut(s) 8
Hin1II CATG 1 cut(s) 287
HphI GGTGA 1 cut(s) 160
Hpy166II GTNNAC 1 cut(s) 31
Hpy188I TCNGA 1 cut(s) 338
Hpy188III TCNNGA 1 cut(s) 98
Hpy8I GTNNAC 1 cut(s) 31
HpyCH4V TGCA 3 cut(s) 68, 74, 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 196
HpyF3I CTNAG 4 cut(s) 80, 91, 218, 323
Hsp92II CATG 1 cut(s) 287
Kzo9I GATC 1 cut(s) 107
LmnI GCTCC 1 cut(s) 311
LpnPI CCDG 6 cut(s) 111, 131, 258, 301, 316, 328
Lsp1109I GCAGC 2 cut(s) 177, 260
MaeIII GTNAC 1 cut(s) 20
MalI GATC 1 cut(s) 109
MboI GATC 1 cut(s) 107
MboII GAAGA 4 cut(s) 102, 157, 194, 219
MflI RGATCY 1 cut(s) 107
MluCI AATT 1 cut(s) 277
MmeI TCCRAC 1 cut(s) 333
MnlI CCTC 5 cut(s) 141, 165, 204, 210, 235
MslI CAYNNNNRTG 1 cut(s) 288
MspR9I CCNGG 1 cut(s) 316
MvaI CCWGG 1 cut(s) 316
MwoI GCNNNNNNNGC 1 cut(s) 196
NdeII GATC 1 cut(s) 107
NlaIII CATG 1 cut(s) 287
NmuCI GTSAC 1 cut(s) 20
PflFI GACNNNGTC 1 cut(s) 26
PkrI GCNGC 2 cut(s) 192, 250
Psp6I CCWGG 1 cut(s) 314
PspGI CCWGG 1 cut(s) 314
PstI CTGCAG 1 cut(s) 250
PstNI CAGNNNCTG 2 cut(s) 98, 245
PsuI RGATCY 1 cut(s) 107
PsyI GACNNNGTC 1 cut(s) 26
RseI CAYNNNNRTG 1 cut(s) 288
SatI GCNGC 2 cut(s) 191, 249
Sau3AI GATC 1 cut(s) 107
ScrFI CCNGG 1 cut(s) 316
SetI ASST 4 cut(s) 81, 253, 308, 320
SfcI CTRYAG 1 cut(s) 246
SmiMI CAYNNNNRTG 1 cut(s) 288
SmlI CTYRAG 1 cut(s) 259
SmoI CTYRAG 1 cut(s) 259
Sse9I AATT 1 cut(s) 277
SsiI CCGC 1 cut(s) 210
StyD4I CCNGG 1 cut(s) 314
TasI AATT 1 cut(s) 277
TscAI CASTG 1 cut(s) 25
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 2 cut(s) 190, 248
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 1 cut(s) 219
TspRI CASTG 1 cut(s) 25
Tth111I GACNNNGTC 1 cut(s) 26
XapI RAATTY 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.