Rh2DG364200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0013215
Physical Location & Seq
Reverse (-)
51385552 .. 51386446
895 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG364200.1

Sequence Viewer

Length: 348 bp
ATGGAGGTCATTGCTTTCAGTGACCAAGTCCACAACAACAAAGAGAACATCCCTCCATTTTCCTCTCCAAATGCAAAGCTGAGCAAGAACCCCGTTCCTGAAAGTGGGTCTTCTACCAAGAAATGTAAGAAAATTATAAGGCTGAAGAGGAAGCCTCTTGCTGACATCACCAATCTCTACCAATCAAGGCTGCCTCTGCCTCTTCCAGGCGGAACTCTTGGACCTTCTTCCTCTGTTTCAGTCCCTGCAGCTTTATATTCAAGGAAAAGGAAAGCAAGTTCCCATGAGAATGAGAATGAGAATGAGACCATCGCCAACTCCAGGTCGCTAAGGATGGGTTTCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.66

Weight (kDa)

10.2

Isoelectric Point (pI)

64.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 137
AciI CCGC 1 cut(s) 210
AcuI CTGAAG 1 cut(s) 164
AfiI CCNNNNNNNGG 3 cut(s) 104, 206, 321
AgsI TTSAA 1 cut(s) 261
AjnI CCWGG 2 cut(s) 205, 320
AloI GAACNNNNNNTCC 2 cut(s) 262, 294
AluBI AGCT 2 cut(s) 79, 251
AluI AGCT 2 cut(s) 79, 251
Alw26I GTCTC 1 cut(s) 299
AlwNI CAGNNNCTG 1 cut(s) 245
ApeKI GCWGC 2 cut(s) 190, 248
AspS9I GGNCC 1 cut(s) 221
AsuHPI GGTGA 1 cut(s) 160
AvaII GGWCC 1 cut(s) 221
BbsI GAAGAC 1 cut(s) 102
BbvI GCAGC 2 cut(s) 177, 260
BccI CCATC 2 cut(s) 317, 328
BciT130I CCWGG 2 cut(s) 207, 322
BcoDI GTCTC 1 cut(s) 299
BfmI CTRYAG 1 cut(s) 246
BisI GCNGC 2 cut(s) 191, 249
BlpI GCTNAGC 1 cut(s) 80
BlsI GCNGC 2 cut(s) 192, 250
Bme1390I CCNGG 2 cut(s) 207, 322
Bme18I GGWCC 1 cut(s) 221
BmgT120I GGNCC 1 cut(s) 221
BmrFI CCNGG 2 cut(s) 207, 322
BpiI GAAGAC 1 cut(s) 102
BplI GAGNNNNNCTC 2 cut(s) 139, 171
BpmI CTGGAG 1 cut(s) 304
Bpu10I CCTNAGC 1 cut(s) 329
Bpu1102I GCTNAGC 1 cut(s) 80
BsaI GGTCTC 1 cut(s) 299
Bsc4I CCNNNNNNNGG 3 cut(s) 104, 206, 321
Bse3DI GCAATG 1 cut(s) 9
BseBI CCWGG 2 cut(s) 207, 322
BseGI GGATG 2 cut(s) 48, 339
BseLI CCNNNNNNNGG 3 cut(s) 104, 206, 321
BseMI GCAATG 1 cut(s) 9
BseMII CTCAG 1 cut(s) 71
BseXI GCAGC 2 cut(s) 177, 260
BslFI GGGAC 1 cut(s) 227
BslI CCNNNNNNNGG 3 cut(s) 104, 206, 321
BsmAI GTCTC 1 cut(s) 299
BsmFI GGGAC 1 cut(s) 227
Bso31I GGTCTC 1 cut(s) 299
Bsp1720I GCTNAGC 1 cut(s) 80
BspACI CCGC 1 cut(s) 210
BspCNI CTCAG 1 cut(s) 72
BspMAI CTGCAG 1 cut(s) 250
BspTNI GGTCTC 1 cut(s) 299
BsrDI GCAATG 1 cut(s) 9
Bst2UI CCWGG 2 cut(s) 207, 322
Bst6I CTCTTC 2 cut(s) 140, 207
BstDEI CTNAG 2 cut(s) 80, 329
BstENI CCTNNNNNAGG 1 cut(s) 204
BstF5I GGATG 2 cut(s) 48, 339
BstMAI GTCTC 1 cut(s) 299
BstMWI GCNNNNNNNGC 1 cut(s) 196
BstNI CCWGG 2 cut(s) 207, 322
BstSCI CCNGG 2 cut(s) 205, 320
BstSFI CTRYAG 1 cut(s) 246
BstV1I GCAGC 2 cut(s) 177, 260
BstV2I GAAGAC 1 cut(s) 102
BtgZI GCGATG 1 cut(s) 295
BtsCI GGATG 2 cut(s) 48, 339
BtsIMutI CAGTG 1 cut(s) 25
CaiI CAGNNNCTG 1 cut(s) 245
Cfr13I GGNCC 1 cut(s) 221
CviAII CATG 1 cut(s) 284
CviJI RGCY 5 cut(s) 79, 142, 154, 190, 251
CviKI_1 RGCY 5 cut(s) 79, 142, 154, 190, 251
DdeI CTNAG 2 cut(s) 80, 329
Eam1104I CTCTTC 2 cut(s) 140, 207
EarI CTCTTC 2 cut(s) 140, 207
EciI GGCGGA 1 cut(s) 225
Eco31I GGTCTC 1 cut(s) 299
Eco47I GGWCC 1 cut(s) 221
Eco57I CTGAAG 1 cut(s) 164
EcoNI CCTNNNNNAGG 1 cut(s) 204
EcoRII CCWGG 2 cut(s) 205, 320
FaeI CATG 1 cut(s) 287
FaiI YATR 3 cut(s) 137, 256, 285
FalI AAGNNNNNCTT 2 cut(s) 94, 126
FaqI GGGAC 1 cut(s) 227
FatI CATG 1 cut(s) 283
Fnu4HI GCNGC 2 cut(s) 191, 249
FokI GGATG 1 cut(s) 35
Fsp4HI GCNGC 2 cut(s) 191, 249
GluI GCNGC 2 cut(s) 191, 249
GsuI CTGGAG 1 cut(s) 304
Hin1II CATG 1 cut(s) 287
HphI GGTGA 1 cut(s) 160
Hpy166II GTNNAC 1 cut(s) 31
Hpy188I TCNGA 1 cut(s) 344
Hpy188III TCNNGA 1 cut(s) 98
Hpy8I GTNNAC 1 cut(s) 31
HpyAV CCTTC 1 cut(s) 234
HpyCH4V TGCA 2 cut(s) 74, 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 196
HpyF3I CTNAG 2 cut(s) 80, 329
Hsp92II CATG 1 cut(s) 287
LpnPI CCDG 6 cut(s) 111, 192, 219, 258, 307, 334
Lsp1109I GCAGC 2 cut(s) 177, 260
MaeIII GTNAC 1 cut(s) 20
MboII GAAGA 4 cut(s) 102, 157, 194, 219
MluCI AATT 1 cut(s) 132
MnlI CCTC 7 cut(s) 63, 73, 141, 165, 204, 210, 241
MslI CAYNNNNRTG 1 cut(s) 288
MspR9I CCNGG 2 cut(s) 207, 322
MvaI CCWGG 2 cut(s) 207, 322
MwoI GCNNNNNNNGC 1 cut(s) 196
NlaIII CATG 1 cut(s) 287
NmuCI GTSAC 1 cut(s) 20
PflFI GACNNNGTC 1 cut(s) 26
PkrI GCNGC 2 cut(s) 192, 250
PsiI TTATAA 1 cut(s) 137
Psp6I CCWGG 2 cut(s) 205, 320
PspGI CCWGG 2 cut(s) 205, 320
PspPI GGNCC 1 cut(s) 221
PstI CTGCAG 1 cut(s) 250
PstNI CAGNNNCTG 1 cut(s) 245
PsyI GACNNNGTC 1 cut(s) 26
RseI CAYNNNNRTG 1 cut(s) 288
SatI GCNGC 2 cut(s) 191, 249
Sau96I GGNCC 1 cut(s) 221
ScrFI CCNGG 2 cut(s) 207, 322
SetI ASST 5 cut(s) 9, 81, 226, 253, 326
SfcI CTRYAG 1 cut(s) 246
SinI GGWCC 1 cut(s) 221
SmiMI CAYNNNNRTG 1 cut(s) 288
Sse9I AATT 1 cut(s) 132
SsiI CCGC 1 cut(s) 210
StyD4I CCNGG 2 cut(s) 205, 320
TasI AATT 1 cut(s) 132
TscAI CASTG 1 cut(s) 25
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 2 cut(s) 190, 248
Tsp45I GTSAC 1 cut(s) 20
TspRI CASTG 1 cut(s) 25
Tth111I GACNNNGTC 1 cut(s) 26
VpaK11BI GGWCC 1 cut(s) 221
XagI CCTNNNNNAGG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.