RLG00000019738

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0018666
Physical Location & Seq
Forward (+)
56133206 .. 56134000
795 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019738

Sequence Viewer

Length: 705 bp
ATGAGCTCAACAGGTAGGGAGGAAGCAAATGATGATGGGATGCAGTTAGGCAGCGGAGCTGACGATCTAGCAGTAGCAGGCGAGTATCTCCGCCACAAGACATTCAACGACCGTATCTTGTATCTTACCAACATGTTCGGCGTCTGTGTCGCTCTCAAGAATGGAGGAGGTTCCGGAAGTAGTCCGTCTCCCTTCGTCACAGACTTCCTTACCACGCGTGCCCTTCTTCTTGCTTTGTCCCTCTACACCGCCTCACTGGCTAGTGCTGATGCCAAAACTCACTCCAATGTCGAGTCTGATCCGGATGAAGCTGAATTCACGAATAACATTACCGTCGTCTGTGGCACTCTAGTCTTGACTTTACAGTTGTTTCTTCTTGTTCCAGCTTTTGGGTGGTTAGCCCTCGTCTCTTGGACCATTAATTTGGTGAGGGTTTTCACAAAATCGTGGTGTTACTTAAAGAGATTGTATCAAAATAAGGTTGCAGCAGCAATTCCGCAAGTAGTTGACAAATTCAAGACTCTGAAGGGGCTCATCGTGAGGTGTCTTGACGGATTGAAGACTCTTAAGGGTTGGCGACACCACCCACGAAACAGAGGAGGAGAATGGACGTCCTTGAAAAGAGTACGATTAAACAAAACTGATAGAGGCCAGCTGGCCAGTGTCTTCAGTAGTAGGGTTTTCCTTTGTACTTGTTGTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

235

Amino Acids

25.76

Weight (kDa)

9.23

Isoelectric Point (pI)

28.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018666)

Species Orthologous Gene IDs
rosa_laevigata RLG00000019738
rosa_multiflora Rmu_co8439821.1_g000001 Rmu_sc0002475.1_g000003 Rmu_sc0006186.1_g000001
rosa_roxburghii Rroxscaffold_2G00106320
rosa_samantha Rh2AG399600 Rh2BG408600 Rh2CG386000 Rh2DG419400
rosa_wichuraiana Rw2G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 614
AccB7I CCANNNNNTGG 1 cut(s) 389
AccII CGCG 1 cut(s) 217
AccIII TCCGGA 2 cut(s) 173, 301
AciI CCGC 4 cut(s) 54, 91, 249, 497
AclWI GGATC 1 cut(s) 293
AcoI YGGCCR 1 cut(s) 657
AcsI RAATTY 2 cut(s) 314, 512
AcuI CTGAAG 2 cut(s) 545, 652
AcyI GRCGYC 2 cut(s) 141, 611
AfaI GTAC 2 cut(s) 627, 691
AfiI CCNNNNNNNGG 1 cut(s) 389
AflII CTTAAG 1 cut(s) 566
AflIII ACRYGT 2 cut(s) 132, 215
AgsI TTSAA 4 cut(s) 106, 517, 559, 619
AluBI AGCT 5 cut(s) 6, 59, 311, 386, 655
AluI AGCT 5 cut(s) 6, 59, 311, 386, 655
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 2 cut(s) 192, 412
AlwI GGATC 1 cut(s) 293
Aor13HI TCCGGA 2 cut(s) 173, 301
AoxI GGCC 2 cut(s) 649, 657
ApeKI GCWGC 3 cut(s) 51, 485, 488
ApoI RAATTY 2 cut(s) 314, 512
ArsI GACNNNNNNTTYG 2 cut(s) 406, 438
AseI ATTAAT 1 cut(s) 420
AspS9I GGNCC 1 cut(s) 414
AsuHPI GGTGA 1 cut(s) 439
AvaII GGWCC 1 cut(s) 414
BaeGI GKGCMC 1 cut(s) 223
BaeI ACNNNNGTAYC 2 cut(s) 97, 130
BalI TGGCCA 1 cut(s) 659
BanII GRGCYC 2 cut(s) 8, 534
BbsI GAAGAC 2 cut(s) 566, 658
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 3 cut(s) 63, 497, 500
BccI CCATC 1 cut(s) 29
BcoDI GTCTC 2 cut(s) 192, 412
BfaI CTAG 3 cut(s) 68, 261, 350
BfrI CTTAAG 1 cut(s) 566
BglI GCCNNNNNGGC 1 cut(s) 257
BisI GCNGC 3 cut(s) 52, 486, 489
BlsI GCNGC 3 cut(s) 53, 487, 490
Bme18I GGWCC 1 cut(s) 414
BmgT120I GGNCC 1 cut(s) 414
BmiI GGNNCC 1 cut(s) 172
BmsI GCATC 2 cut(s) 30, 259
BpiI GAAGAC 2 cut(s) 566, 658
BpuEI CTTGAG 1 cut(s) 140
BsaHI GRCGYC 2 cut(s) 141, 611
BsaWI WCCGGW 2 cut(s) 173, 301
Bsc4I CCNNNNNNNGG 1 cut(s) 389
Bse1I ACTGG 2 cut(s) 261, 660
BseAI TCCGGA 2 cut(s) 173, 301
BseGI GGATG 2 cut(s) 45, 310
BseLI CCNNNNNNNGG 1 cut(s) 389
BseNI ACTGG 2 cut(s) 261, 660
BseRI GAGGAG 3 cut(s) 180, 612, 615
BseSI GKGCMC 1 cut(s) 223
BseXI GCAGC 3 cut(s) 63, 497, 500
Bsh1236I CGCG 1 cut(s) 217
Bsh1285I CGRYCG 1 cut(s) 112
BshFI GGCC 2 cut(s) 651, 659
BsiEI CGRYCG 1 cut(s) 112
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 2 cut(s) 174, 302
BslFI GGGAC 1 cut(s) 223
BslI CCNNNNNNNGG 1 cut(s) 389
BsmAI GTCTC 2 cut(s) 192, 412
BsmBI CGTCTC 2 cut(s) 192, 412
BsmFI GGGAC 1 cut(s) 223
BsnI GGCC 2 cut(s) 651, 659
Bsp1286I GDGCHC 3 cut(s) 8, 223, 534
Bsp13I TCCGGA 2 cut(s) 173, 301
Bsp143I GATC 2 cut(s) 64, 298
BspACI CCGC 4 cut(s) 54, 91, 249, 497
BspANI GGCC 2 cut(s) 651, 659
BspEI TCCGGA 2 cut(s) 173, 301
BspFNI CGCG 1 cut(s) 217
BspLI GGNNCC 1 cut(s) 172
BspPI GGATC 1 cut(s) 293
BspTI CTTAAG 1 cut(s) 566
BsrI ACTGG 2 cut(s) 261, 660
BssMI GATC 2 cut(s) 64, 298
BssNI GRCGYC 2 cut(s) 141, 611
Bst4CI ACNGT 3 cut(s) 113, 334, 366
BstACI GRCGYC 2 cut(s) 141, 611
BstAFI CTTAAG 1 cut(s) 566
BstC8I GCNNGC 4 cut(s) 79, 219, 653, 657
BstF5I GGATG 2 cut(s) 45, 310
BstFNI CGCG 1 cut(s) 217
BstKTI GATC 2 cut(s) 67, 301
BstMAI GTCTC 2 cut(s) 192, 412
BstMBI GATC 2 cut(s) 64, 298
BstMCI CGRYCG 1 cut(s) 112
BstMWI GCNNNNNNNGC 1 cut(s) 257
BstNSI RCATGY 1 cut(s) 136
BstSLI GKGCMC 1 cut(s) 223
BstUI CGCG 1 cut(s) 217
BstV1I GCAGC 3 cut(s) 63, 497, 500
BstV2I GAAGAC 2 cut(s) 566, 658
BstXI CCANNNNNNTGG 1 cut(s) 424
BsuRI GGCC 2 cut(s) 651, 659
BtsCI GGATG 2 cut(s) 45, 310
BtsIMutI CAGTG 2 cut(s) 254, 667
Cac8I GCNNGC 4 cut(s) 79, 219, 653, 657
Cfr13I GGNCC 1 cut(s) 414
CseI GACGC 1 cut(s) 130
Csp6I GTAC 2 cut(s) 626, 690
CviAII CATG 1 cut(s) 133
CviQI GTAC 2 cut(s) 626, 690
DpnI GATC 2 cut(s) 66, 300
DpnII GATC 2 cut(s) 64, 298
EaeI YGGCCR 1 cut(s) 657
EciI GGCGGA 1 cut(s) 80
Ecl136II GAGCTC 1 cut(s) 6
Eco24I GRGCYC 2 cut(s) 8, 534
Eco47I GGWCC 1 cut(s) 414
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 2 cut(s) 545, 652
EcoICRI GAGCTC 1 cut(s) 6
EcoRI GAATTC 1 cut(s) 314
EcoT38I GRGCYC 2 cut(s) 8, 534
Esp3I CGTCTC 2 cut(s) 192, 412
FaeI CATG 1 cut(s) 136
FaiI YATR 1 cut(s) 134
FaqI GGGAC 1 cut(s) 223
FatI CATG 1 cut(s) 132
Fnu4HI GCNGC 3 cut(s) 52, 486, 489
FokI GGATG 2 cut(s) 52, 317
FriOI GRGCYC 2 cut(s) 8, 534
Fsp4HI GCNGC 3 cut(s) 52, 486, 489
FspBI CTAG 3 cut(s) 68, 261, 350
GluI GCNGC 3 cut(s) 52, 486, 489
HaeIII GGCC 2 cut(s) 651, 659
HapII CCGG 2 cut(s) 174, 302
HgaI GACGC 1 cut(s) 130
Hin1I GRCGYC 2 cut(s) 141, 611
Hin1II CATG 1 cut(s) 136
HincII GTYRAC 1 cut(s) 508
HindII GTYRAC 1 cut(s) 508
HinfI GANTC 3 cut(s) 293, 520, 562
HpaII CCGG 2 cut(s) 174, 302
HphI GGTGA 1 cut(s) 439
Hpy166II GTNNAC 1 cut(s) 508
Hpy188I TCNGA 2 cut(s) 298, 525
Hpy188III TCNNGA 8 cut(s) 157, 174, 302, 319, 355, 517, 538, 548
Hpy8I GTNNAC 1 cut(s) 508
Hpy99I CGWCG 1 cut(s) 338
HpyAV CCTTC 3 cut(s) 202, 233, 520
HpyCH4III ACNGT 3 cut(s) 113, 334, 366
HpyCH4IV ACGT 1 cut(s) 611
HpyCH4V TGCA 2 cut(s) 43, 485
HpyF10VI GCNNNNNNNGC 1 cut(s) 257
HpySE526I ACGT 1 cut(s) 611
Hsp92I GRCGYC 2 cut(s) 141, 611
Hsp92II CATG 1 cut(s) 136
Kpn2I TCCGGA 2 cut(s) 173, 301
Kzo9I GATC 2 cut(s) 64, 298
LmnI GCTCC 1 cut(s) 56
LpnPI CCDG 8 cut(s) 63, 187, 242, 315, 396, 641, 665, 673
Lsp1109I GCAGC 3 cut(s) 63, 497, 500
LweI GCATC 2 cut(s) 30, 259
MaeI CTAG 3 cut(s) 68, 261, 350
MaeII ACGT 1 cut(s) 611
MaeIII GTNAC 2 cut(s) 196, 452
MalI GATC 2 cut(s) 66, 300
MboI GATC 2 cut(s) 64, 298
MboII GAAGA 4 cut(s) 218, 365, 571, 658
MhlI GDGCHC 3 cut(s) 8, 223, 534
MlsI TGGCCA 1 cut(s) 659
MluCI AATT 5 cut(s) 314, 421, 492, 512, 700
MluI ACGCGT 1 cut(s) 215
MluNI TGGCCA 1 cut(s) 659
MlyI GAGTC 3 cut(s) 302, 514, 556
Mox20I TGGCCA 1 cut(s) 659
MroI TCCGGA 2 cut(s) 173, 301
MscI TGGCCA 1 cut(s) 659
MseI TTAA 5 cut(s) 420, 458, 567, 632, 703
MslI CAYNNNNRTG 1 cut(s) 285
Msp20I TGGCCA 1 cut(s) 659
MspA1I CMGCKG 2 cut(s) 54, 655
MspCI CTTAAG 1 cut(s) 566
MspI CCGG 2 cut(s) 174, 302
MvnI CGCG 1 cut(s) 217
MwoI GCNNNNNNNGC 1 cut(s) 257
NdeII GATC 2 cut(s) 64, 298
NlaIII CATG 1 cut(s) 136
NlaIV GGNNCC 1 cut(s) 172
NmuCI GTSAC 1 cut(s) 196
NspI RCATGY 1 cut(s) 136
PciI ACATGT 1 cut(s) 132
PflMI CCANNNNNTGG 1 cut(s) 389
PkrI GCNGC 3 cut(s) 53, 487, 490
PleI GAGTC 3 cut(s) 301, 514, 556
PpsI GAGTC 3 cut(s) 301, 514, 556
PscI ACATGT 1 cut(s) 132
PshBI ATTAAT 1 cut(s) 420
Psp124BI GAGCTC 1 cut(s) 8
PspN4I GGNNCC 1 cut(s) 172
PspPI GGNCC 1 cut(s) 414
PvuII CAGCTG 1 cut(s) 655
RsaI GTAC 2 cut(s) 627, 691
RsaNI GTAC 2 cut(s) 626, 690
RseI CAYNNNNRTG 1 cut(s) 285
SacI GAGCTC 1 cut(s) 8
SaqAI TTAA 5 cut(s) 420, 458, 567, 632, 703
SatI GCNGC 3 cut(s) 52, 486, 489
Sau3AI GATC 2 cut(s) 64, 298
Sau96I GGNCC 1 cut(s) 414
SchI GAGTC 3 cut(s) 302, 514, 556
SduI GDGCHC 3 cut(s) 8, 223, 534
SfaNI GCATC 2 cut(s) 30, 259
SinI GGWCC 1 cut(s) 414
SmiMI CAYNNNNRTG 1 cut(s) 285
SmlI CTYRAG 2 cut(s) 155, 566
SmoI CTYRAG 2 cut(s) 155, 566
Sse9I AATT 5 cut(s) 314, 421, 492, 512, 700
SsiI CCGC 4 cut(s) 54, 91, 249, 497
SspMI CTAG 3 cut(s) 68, 261, 350
SstI GAGCTC 1 cut(s) 8
TaaI ACNGT 3 cut(s) 113, 334, 366
TaiI ACGT 1 cut(s) 614
TaqI TCGA 1 cut(s) 291
TasI AATT 5 cut(s) 314, 421, 492, 512, 700
TatI WGTACW 1 cut(s) 689
Tru1I TTAA 5 cut(s) 420, 458, 567, 632, 703
Tru9I TTAA 5 cut(s) 420, 458, 567, 632, 703
TscAI CASTG 2 cut(s) 261, 667
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 3 cut(s) 51, 485, 488
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 1 cut(s) 321
TspGWI ACGGA 2 cut(s) 174, 567
TspRI CASTG 2 cut(s) 261, 667
Van91I CCANNNNNTGG 1 cut(s) 389
Vha464I CTTAAG 1 cut(s) 566
VpaK11BI GGWCC 1 cut(s) 414
VspI ATTAAT 1 cut(s) 420
XapI RAATTY 2 cut(s) 314, 512
XceI RCATGY 1 cut(s) 136
XcmI CCANNNNNNNNNTGG 1 cut(s) 390
XspI CTAG 3 cut(s) 68, 261, 350
ZraI GACGTC 1 cut(s) 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.