Rmu_co8439821.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8439821.1
OG0018666
Physical Location & Seq
Reverse (-)
837 .. 1577
741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8439821.1_g000001.1.cds

Sequence Viewer

Length: 741 bp
caaggaggaggaaaggggaggaggcacggaggggctttgaggagaaaggaggagacggggaggaggagaagaagagtggcaaggagtacaaaggagaagatcgaggaggagggccaggagctcgaagtacaaaggatgagctcaacaggtggggaggaaccaaatgatgatgggacgcagttaggcaccgaagctgacgacctagcagtagcaggcgagtatcttcaccacaagacactcaacgaccgtatattgtatcttaccaacatgttcggagtctgtgtcgtgctcaagaacggaggaggtttcggaagtagtccgtctccctttgtcacagacttccttaccacgcgtgcccttcttctggctttgtccctctacaccgtctcactgggtattgttgatgcccagactcactccaatgtcgagtccgatccggatgaagctgaattcaggaataacattaccgtcgtctgtggcactctagtcttgactttacagttgtttcttcttgttccagcttttgggtggttagccctcgtctcttggaccattaatttggtgagggttttaacaaaatcgtggtgctacttaaagagattgtatcaaactaaagttgcagcagtagttgacgaattcaagactttgaaggagctcatcgtgaggtgtcttgccggattgaagactttgagggatggcgacaccacccacgaaacagaggaggagaatggacgtccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

246

Amino Acids

27.26

Weight (kDa)

6.27

Isoelectric Point (pI)

49.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018666)

Species Orthologous Gene IDs
rosa_laevigata RLG00000019738
rosa_multiflora Rmu_co8439821.1_g000001 Rmu_sc0002475.1_g000003 Rmu_sc0006186.1_g000001
rosa_roxburghii Rroxscaffold_2G00106320
rosa_samantha Rh2AG399600 Rh2BG408600 Rh2CG386000 Rh2DG419400
rosa_wichuraiana Rw2G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 736
AccB1I GGYRCC 1 cut(s) 185
AccB7I CCANNNNNTGG 1 cut(s) 524
AccII CGCG 1 cut(s) 352
AccIII TCCGGA 1 cut(s) 436
AclWI GGATC 1 cut(s) 428
AcsI RAATTY 2 cut(s) 449, 635
AcyI GRCGYC 1 cut(s) 733
AfaI GTAC 2 cut(s) 88, 129
AfiI CCNNNNNNNGG 2 cut(s) 364, 524
AflIII ACRYGT 2 cut(s) 267, 350
AgsI TTSAA 3 cut(s) 640, 649, 682
AjnI CCWGG 1 cut(s) 114
AluBI AGCT 6 cut(s) 121, 141, 194, 446, 521, 655
AluI AGCT 6 cut(s) 121, 141, 194, 446, 521, 655
Alw21I GWGCWC 4 cut(s) 123, 143, 291, 657
Alw26I GTCTC 4 cut(s) 47, 327, 391, 547
AlwI GGATC 1 cut(s) 428
Aor13HI TCCGGA 1 cut(s) 436
AoxI GGCC 1 cut(s) 112
ApeKI GCWGC 1 cut(s) 620
ApoI RAATTY 2 cut(s) 449, 635
ArsI GACNNNNNNTTYG 2 cut(s) 541, 573
AseI ATTAAT 1 cut(s) 555
AspS9I GGNCC 2 cut(s) 112, 549
AsuHPI GGTGA 2 cut(s) 218, 574
AvaII GGWCC 1 cut(s) 549
BaeGI GKGCMC 1 cut(s) 358
BanI GGYRCC 1 cut(s) 185
BanII GRGCYC 3 cut(s) 123, 143, 657
BbsI GAAGAC 1 cut(s) 689
Bbv12I GWGCWC 4 cut(s) 123, 143, 291, 657
BbvI GCAGC 1 cut(s) 632
BccI CCATC 2 cut(s) 164, 689
BciT130I CCWGG 1 cut(s) 116
BcoDI GTCTC 4 cut(s) 47, 327, 391, 547
BfaI CTAG 2 cut(s) 203, 485
BisI GCNGC 1 cut(s) 621
BlsI GCNGC 1 cut(s) 622
Bme1390I CCNGG 1 cut(s) 116
Bme18I GGWCC 1 cut(s) 549
BmgT120I GGNCC 2 cut(s) 112, 549
BmiI GGNNCC 2 cut(s) 159, 187
BmrFI CCNGG 1 cut(s) 116
BmrI ACTGGG 1 cut(s) 401
BmsI GCATC 1 cut(s) 394
BmuI ACTGGG 1 cut(s) 401
BpiI GAAGAC 1 cut(s) 689
BpuEI CTTGAG 1 cut(s) 275
BsaHI GRCGYC 1 cut(s) 733
BsaWI WCCGGW 1 cut(s) 436
BsaXI ACNNNNNCTCC 2 cut(s) 267, 297
Bsc4I CCNNNNNNNGG 2 cut(s) 364, 524
Bse1I ACTGG 1 cut(s) 396
BseAI TCCGGA 1 cut(s) 436
BseBI CCWGG 1 cut(s) 116
BseGI GGATG 3 cut(s) 141, 445, 700
BseLI CCNNNNNNNGG 2 cut(s) 364, 524
BseNI ACTGG 1 cut(s) 396
BseSI GKGCMC 1 cut(s) 358
BseXI GCAGC 1 cut(s) 632
Bsh1236I CGCG 1 cut(s) 352
Bsh1285I CGRYCG 1 cut(s) 247
BshFI GGCC 1 cut(s) 114
BshNI GGYRCC 1 cut(s) 185
BsiEI CGRYCG 1 cut(s) 247
BsiHKAI GWGCWC 4 cut(s) 123, 143, 291, 657
BsiSI CCGG 2 cut(s) 437, 675
BslFI GGGAC 2 cut(s) 187, 358
BslI CCNNNNNNNGG 2 cut(s) 364, 524
BsmAI GTCTC 4 cut(s) 47, 327, 391, 547
BsmBI CGTCTC 4 cut(s) 47, 327, 391, 547
BsmFI GGGAC 2 cut(s) 187, 358
BsnI GGCC 1 cut(s) 114
Bsp1286I GDGCHC 5 cut(s) 123, 143, 291, 358, 657
Bsp13I TCCGGA 1 cut(s) 436
Bsp143I GATC 2 cut(s) 99, 433
BspANI GGCC 1 cut(s) 114
BspEI TCCGGA 1 cut(s) 436
BspFNI CGCG 1 cut(s) 352
BspLI GGNNCC 2 cut(s) 159, 187
BspPI GGATC 1 cut(s) 428
BspT107I GGYRCC 1 cut(s) 185
BsrI ACTGG 1 cut(s) 396
BssMI GATC 2 cut(s) 99, 433
BssNI GRCGYC 1 cut(s) 733
Bst2UI CCWGG 1 cut(s) 116
Bst4CI ACNGT 4 cut(s) 248, 385, 469, 501
Bst6I CTCTTC 1 cut(s) 67
BstACI GRCGYC 1 cut(s) 733
BstC8I GCNNGC 2 cut(s) 214, 354
BstF5I GGATG 3 cut(s) 141, 445, 700
BstFNI CGCG 1 cut(s) 352
BstKTI GATC 2 cut(s) 102, 436
BstMAI GTCTC 4 cut(s) 47, 327, 391, 547
BstMBI GATC 2 cut(s) 99, 433
BstMCI CGRYCG 1 cut(s) 247
BstNI CCWGG 1 cut(s) 116
BstNSI RCATGY 1 cut(s) 271
BstSCI CCNGG 1 cut(s) 114
BstSLI GKGCMC 1 cut(s) 358
BstUI CGCG 1 cut(s) 352
BstV1I GCAGC 1 cut(s) 632
BstV2I GAAGAC 1 cut(s) 689
BstXI CCANNNNNNTGG 1 cut(s) 559
BsuRI GGCC 1 cut(s) 114
BtsCI GGATG 3 cut(s) 141, 445, 700
BtsIMutI CAGTG 1 cut(s) 389
Cac8I GCNNGC 2 cut(s) 214, 354
Cfr13I GGNCC 2 cut(s) 112, 549
CseI GACGC 1 cut(s) 184
Csp6I GTAC 2 cut(s) 87, 128
CviAII CATG 1 cut(s) 268
CviQI GTAC 2 cut(s) 87, 128
DpnI GATC 2 cut(s) 101, 435
DpnII GATC 2 cut(s) 99, 433
Eam1104I CTCTTC 1 cut(s) 67
EarI CTCTTC 1 cut(s) 67
Ecl136II GAGCTC 3 cut(s) 121, 141, 655
Eco24I GRGCYC 3 cut(s) 123, 143, 657
Eco47I GGWCC 1 cut(s) 549
Eco53kI GAGCTC 3 cut(s) 121, 141, 655
EcoICRI GAGCTC 3 cut(s) 121, 141, 655
EcoRI GAATTC 2 cut(s) 449, 635
EcoRII CCWGG 1 cut(s) 114
EcoT38I GRGCYC 3 cut(s) 123, 143, 657
Esp3I CGTCTC 4 cut(s) 47, 327, 391, 547
FaeI CATG 1 cut(s) 271
FaiI YATR 2 cut(s) 251, 269
FaqI GGGAC 2 cut(s) 187, 358
FatI CATG 1 cut(s) 267
Fnu4HI GCNGC 1 cut(s) 621
FokI GGATG 3 cut(s) 148, 452, 707
FriOI GRGCYC 3 cut(s) 123, 143, 657
Fsp4HI GCNGC 1 cut(s) 621
FspBI CTAG 2 cut(s) 203, 485
GluI GCNGC 1 cut(s) 621
HaeIII GGCC 1 cut(s) 114
HapII CCGG 2 cut(s) 437, 675
HgaI GACGC 1 cut(s) 184
Hin1I GRCGYC 1 cut(s) 733
Hin1II CATG 1 cut(s) 271
HincII GTYRAC 1 cut(s) 631
HindII GTYRAC 1 cut(s) 631
HinfI GANTC 3 cut(s) 276, 412, 428
HpaII CCGG 2 cut(s) 437, 675
HphI GGTGA 2 cut(s) 218, 574
Hpy166II GTNNAC 1 cut(s) 631
Hpy188I TCNGA 3 cut(s) 275, 311, 433
Hpy188III TCNNGA 6 cut(s) 292, 437, 454, 490, 640, 661
Hpy8I GTNNAC 1 cut(s) 631
Hpy99I CGWCG 1 cut(s) 473
HpyAV CCTTC 2 cut(s) 368, 643
HpyCH4III ACNGT 4 cut(s) 248, 385, 469, 501
HpyCH4IV ACGT 1 cut(s) 733
HpyCH4V TGCA 1 cut(s) 620
HpySE526I ACGT 1 cut(s) 733
Hsp92I GRCGYC 1 cut(s) 733
Hsp92II CATG 1 cut(s) 271
Kpn2I TCCGGA 1 cut(s) 436
Kzo9I GATC 2 cut(s) 99, 433
LmnI GCTCC 2 cut(s) 118, 652
Lsp1109I GCAGC 1 cut(s) 632
LweI GCATC 1 cut(s) 394
MaeI CTAG 2 cut(s) 203, 485
MaeII ACGT 1 cut(s) 733
MaeIII GTNAC 1 cut(s) 331
MalI GATC 2 cut(s) 101, 435
MboI GATC 2 cut(s) 99, 433
MboII GAAGA 7 cut(s) 81, 84, 109, 215, 353, 500, 694
MhlI GDGCHC 5 cut(s) 123, 143, 291, 358, 657
MluCI AATT 3 cut(s) 449, 556, 635
MluI ACGCGT 1 cut(s) 350
MlyI GAGTC 3 cut(s) 285, 406, 437
MroI TCCGGA 1 cut(s) 436
MseI TTAA 3 cut(s) 555, 572, 593
MslI CAYNNNNRTG 1 cut(s) 420
MspI CCGG 2 cut(s) 437, 675
MspR9I CCNGG 1 cut(s) 116
MvaI CCWGG 1 cut(s) 116
MvnI CGCG 1 cut(s) 352
NdeII GATC 2 cut(s) 99, 433
NlaIII CATG 1 cut(s) 271
NlaIV GGNNCC 2 cut(s) 159, 187
NmuCI GTSAC 1 cut(s) 331
NspI RCATGY 1 cut(s) 271
PciI ACATGT 1 cut(s) 267
PflMI CCANNNNNTGG 1 cut(s) 524
PkrI GCNGC 1 cut(s) 622
PleI GAGTC 3 cut(s) 284, 406, 436
PpsI GAGTC 3 cut(s) 284, 406, 436
PscI ACATGT 1 cut(s) 267
PshBI ATTAAT 1 cut(s) 555
Psp124BI GAGCTC 3 cut(s) 123, 143, 657
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 2 cut(s) 159, 187
PspPI GGNCC 2 cut(s) 112, 549
RsaI GTAC 2 cut(s) 88, 129
RsaNI GTAC 2 cut(s) 87, 128
RseI CAYNNNNRTG 1 cut(s) 420
SacI GAGCTC 3 cut(s) 123, 143, 657
SaqAI TTAA 3 cut(s) 555, 572, 593
SatI GCNGC 1 cut(s) 621
Sau3AI GATC 2 cut(s) 99, 433
Sau96I GGNCC 2 cut(s) 112, 549
SchI GAGTC 3 cut(s) 285, 406, 437
ScrFI CCNGG 1 cut(s) 116
SduI GDGCHC 5 cut(s) 123, 143, 291, 358, 657
SfaNI GCATC 1 cut(s) 394
SinI GGWCC 1 cut(s) 549
SmiMI CAYNNNNRTG 1 cut(s) 420
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 3 cut(s) 449, 556, 635
SspMI CTAG 2 cut(s) 203, 485
SstI GAGCTC 3 cut(s) 123, 143, 657
StyD4I CCNGG 1 cut(s) 114
TaaI ACNGT 4 cut(s) 248, 385, 469, 501
TaiI ACGT 1 cut(s) 736
TaqI TCGA 3 cut(s) 102, 123, 426
TasI AATT 3 cut(s) 449, 556, 635
TatI WGTACW 2 cut(s) 86, 127
Tru1I TTAA 3 cut(s) 555, 572, 593
Tru9I TTAA 3 cut(s) 555, 572, 593
TscAI CASTG 1 cut(s) 396
TseFI GTSAC 1 cut(s) 331
TseI GCWGC 1 cut(s) 620
Tsp45I GTSAC 1 cut(s) 331
TspDTI ATGAA 1 cut(s) 456
TspGWI ACGGA 3 cut(s) 42, 309, 312
TspRI CASTG 1 cut(s) 396
Van91I CCANNNNNTGG 1 cut(s) 524
VpaK11BI GGWCC 1 cut(s) 549
VspI ATTAAT 1 cut(s) 555
XapI RAATTY 2 cut(s) 449, 635
XceI RCATGY 1 cut(s) 271
XcmI CCANNNNNNNNNTGG 1 cut(s) 525
XspI CTAG 2 cut(s) 203, 485
ZraI GACGTC 1 cut(s) 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.