Rh2DG419400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0018666
Physical Location & Seq
Forward (+)
60821424 .. 60822485
1062 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG419400.1

Sequence Viewer

Length: 606 bp
ATGAGCTCAACTGGTGGGGAGGAAGCAAATGATGATGGGAATGGGATGCAGTTAGGCAGCGAAGCTGACGACCTAGCAGGCGAGTATCTTCACCACAAGACATTCAACGACCGTATCTTGTATCTTATCAACATGTTCGGCGTCTGTGTCGTGCTCAAGAACGGAGGAGGTTTCGGAAGTAGTCAGTCTCCCTTTGTCACAGACTTCCTTACCACGCGTGCCCTTCTTCTGGCTTTGTCCCTCTACACCGTCTCACTGGCTACTGCTGATGCCCAAACTCACTCCAATGTCGAGTCCGATCCGGATGAAGCTGAATTCACGAATAACATTACCGTCGTCTGTGGCACTCTAGTCTTGACTTTACAGTTGTTTCTTCTTGTTCCAGCTTTTGGGTGGTTAGCCCTCGTCTCTTGGACCATTAATTTGGTGAGGGTTTTAACAAAATCGTGGTGCTACTTAAAGAGATTGTATCAAACTAAAGTTGCAGCAGTAGTTGACGAATTCAAGACTTTGAAGGAGCTCATCGTGAGGTGTCTTGCCGGATTGAAGACTTTGAGGGATGGCGACACCACCCACGAAACAGAGGAGGAGAATGGACGTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

22.04

Weight (kDa)

4.77

Isoelectric Point (pI)

30.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018666)

Species Orthologous Gene IDs
rosa_laevigata RLG00000019738
rosa_multiflora Rmu_co8439821.1_g000001 Rmu_sc0002475.1_g000003 Rmu_sc0006186.1_g000001
rosa_roxburghii Rroxscaffold_2G00106320
rosa_samantha Rh2AG399600 Rh2BG408600 Rh2CG386000 Rh2DG419400
rosa_wichuraiana Rw2G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 601
AccB7I CCANNNNNTGG 1 cut(s) 389
AccII CGCG 1 cut(s) 217
AccIII TCCGGA 1 cut(s) 301
AclWI GGATC 1 cut(s) 293
AcsI RAATTY 2 cut(s) 314, 500
AcyI GRCGYC 2 cut(s) 141, 598
AfiI CCNNNNNNNGG 2 cut(s) 229, 389
AflIII ACRYGT 2 cut(s) 132, 215
AgsI TTSAA 4 cut(s) 106, 505, 514, 547
AluBI AGCT 5 cut(s) 6, 65, 311, 386, 520
AluI AGCT 5 cut(s) 6, 65, 311, 386, 520
Alw21I GWGCWC 3 cut(s) 8, 156, 522
Alw26I GTCTC 3 cut(s) 192, 256, 412
AlwI GGATC 1 cut(s) 293
Aor13HI TCCGGA 1 cut(s) 301
ApeKI GCWGC 2 cut(s) 57, 485
ApoI RAATTY 2 cut(s) 314, 500
ArsI GACNNNNNNTTYG 2 cut(s) 406, 438
AseI ATTAAT 1 cut(s) 420
AspS9I GGNCC 1 cut(s) 414
AsuHPI GGTGA 2 cut(s) 83, 439
AvaII GGWCC 1 cut(s) 414
BaeGI GKGCMC 1 cut(s) 223
BaeI ACNNNNGTAYC 2 cut(s) 97, 130
BanII GRGCYC 2 cut(s) 8, 522
BbsI GAAGAC 1 cut(s) 554
Bbv12I GWGCWC 3 cut(s) 8, 156, 522
BbvI GCAGC 2 cut(s) 69, 497
BccI CCATC 2 cut(s) 29, 554
BcoDI GTCTC 3 cut(s) 192, 256, 412
BfaI CTAG 2 cut(s) 74, 350
BisI GCNGC 2 cut(s) 58, 486
BlsI GCNGC 2 cut(s) 59, 487
Bme18I GGWCC 1 cut(s) 414
BmgT120I GGNCC 1 cut(s) 414
BmsI GCATC 2 cut(s) 36, 259
BpiI GAAGAC 1 cut(s) 554
BpuEI CTTGAG 1 cut(s) 140
BsaHI GRCGYC 2 cut(s) 141, 598
BsaWI WCCGGW 1 cut(s) 301
Bsc4I CCNNNNNNNGG 2 cut(s) 229, 389
Bse1I ACTGG 2 cut(s) 16, 261
BseAI TCCGGA 1 cut(s) 301
BseGI GGATG 3 cut(s) 51, 310, 565
BseLI CCNNNNNNNGG 2 cut(s) 229, 389
BseNI ACTGG 2 cut(s) 16, 261
BseRI GAGGAG 3 cut(s) 180, 599, 602
BseSI GKGCMC 1 cut(s) 223
BseXI GCAGC 2 cut(s) 69, 497
Bsh1236I CGCG 1 cut(s) 217
Bsh1285I CGRYCG 1 cut(s) 112
BsiEI CGRYCG 1 cut(s) 112
BsiHKAI GWGCWC 3 cut(s) 8, 156, 522
BsiSI CCGG 2 cut(s) 302, 540
BslFI GGGAC 1 cut(s) 223
BslI CCNNNNNNNGG 2 cut(s) 229, 389
BsmAI GTCTC 3 cut(s) 192, 256, 412
BsmBI CGTCTC 2 cut(s) 256, 412
BsmFI GGGAC 1 cut(s) 223
Bsp1286I GDGCHC 4 cut(s) 8, 156, 223, 522
Bsp13I TCCGGA 1 cut(s) 301
Bsp143I GATC 1 cut(s) 298
BspEI TCCGGA 1 cut(s) 301
BspFNI CGCG 1 cut(s) 217
BspPI GGATC 1 cut(s) 293
BsrI ACTGG 2 cut(s) 16, 261
BssMI GATC 1 cut(s) 298
BssNI GRCGYC 2 cut(s) 141, 598
Bst4CI ACNGT 4 cut(s) 113, 250, 334, 366
BstACI GRCGYC 2 cut(s) 141, 598
BstC8I GCNNGC 2 cut(s) 79, 219
BstF5I GGATG 3 cut(s) 51, 310, 565
BstFNI CGCG 1 cut(s) 217
BstKTI GATC 1 cut(s) 301
BstMAI GTCTC 3 cut(s) 192, 256, 412
BstMBI GATC 1 cut(s) 298
BstMCI CGRYCG 1 cut(s) 112
BstNSI RCATGY 1 cut(s) 136
BstSLI GKGCMC 1 cut(s) 223
BstUI CGCG 1 cut(s) 217
BstV1I GCAGC 2 cut(s) 69, 497
BstV2I GAAGAC 1 cut(s) 554
BstXI CCANNNNNNTGG 1 cut(s) 424
BtsCI GGATG 3 cut(s) 51, 310, 565
BtsIMutI CAGTG 1 cut(s) 254
Cac8I GCNNGC 2 cut(s) 79, 219
Cfr13I GGNCC 1 cut(s) 414
CseI GACGC 1 cut(s) 130
CviAII CATG 1 cut(s) 133
CviJI RGCY 8 cut(s) 6, 65, 233, 260, 311, 386, 401, 520
CviKI_1 RGCY 8 cut(s) 6, 65, 233, 260, 311, 386, 401, 520
DpnI GATC 1 cut(s) 300
DpnII GATC 1 cut(s) 298
Ecl136II GAGCTC 2 cut(s) 6, 520
Eco24I GRGCYC 2 cut(s) 8, 522
Eco47I GGWCC 1 cut(s) 414
Eco53kI GAGCTC 2 cut(s) 6, 520
EcoICRI GAGCTC 2 cut(s) 6, 520
EcoRI GAATTC 2 cut(s) 314, 500
EcoT38I GRGCYC 2 cut(s) 8, 522
Esp3I CGTCTC 2 cut(s) 256, 412
FaeI CATG 1 cut(s) 136
FaiI YATR 1 cut(s) 134
FaqI GGGAC 1 cut(s) 223
FatI CATG 1 cut(s) 132
Fnu4HI GCNGC 2 cut(s) 58, 486
FokI GGATG 3 cut(s) 58, 317, 572
FriOI GRGCYC 2 cut(s) 8, 522
Fsp4HI GCNGC 2 cut(s) 58, 486
FspBI CTAG 2 cut(s) 74, 350
GluI GCNGC 2 cut(s) 58, 486
HapII CCGG 2 cut(s) 302, 540
HgaI GACGC 1 cut(s) 130
Hin1I GRCGYC 2 cut(s) 141, 598
Hin1II CATG 1 cut(s) 136
HincII GTYRAC 1 cut(s) 496
HindII GTYRAC 1 cut(s) 496
HinfI GANTC 1 cut(s) 293
HpaII CCGG 2 cut(s) 302, 540
HphI GGTGA 2 cut(s) 83, 439
Hpy166II GTNNAC 1 cut(s) 496
Hpy188I TCNGA 2 cut(s) 176, 298
Hpy188III TCNNGA 6 cut(s) 157, 302, 319, 355, 505, 526
Hpy8I GTNNAC 1 cut(s) 496
Hpy99I CGWCG 1 cut(s) 338
HpyAV CCTTC 2 cut(s) 233, 508
HpyCH4III ACNGT 4 cut(s) 113, 250, 334, 366
HpyCH4IV ACGT 1 cut(s) 598
HpyCH4V TGCA 2 cut(s) 49, 485
HpySE526I ACGT 1 cut(s) 598
Hsp92I GRCGYC 2 cut(s) 141, 598
Hsp92II CATG 1 cut(s) 136
Kpn2I TCCGGA 1 cut(s) 301
Kzo9I GATC 1 cut(s) 298
LmnI GCTCC 1 cut(s) 517
LpnPI CCDG 6 cut(s) 63, 215, 242, 315, 396, 553
Lsp1109I GCAGC 2 cut(s) 69, 497
LweI GCATC 2 cut(s) 36, 259
MaeI CTAG 2 cut(s) 74, 350
MaeII ACGT 1 cut(s) 598
MaeIII GTNAC 1 cut(s) 196
MalI GATC 1 cut(s) 300
MboI GATC 1 cut(s) 298
MboII GAAGA 4 cut(s) 80, 218, 365, 559
MhlI GDGCHC 4 cut(s) 8, 156, 223, 522
MluCI AATT 3 cut(s) 314, 421, 500
MluI ACGCGT 1 cut(s) 215
MlyI GAGTC 1 cut(s) 302
MroI TCCGGA 1 cut(s) 301
MseI TTAA 3 cut(s) 420, 437, 458
MslI CAYNNNNRTG 1 cut(s) 285
MspI CCGG 2 cut(s) 302, 540
MvnI CGCG 1 cut(s) 217
NdeII GATC 1 cut(s) 298
NlaIII CATG 1 cut(s) 136
NmuCI GTSAC 1 cut(s) 196
NspI RCATGY 1 cut(s) 136
PciI ACATGT 1 cut(s) 132
PflMI CCANNNNNTGG 1 cut(s) 389
PkrI GCNGC 2 cut(s) 59, 487
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
PscI ACATGT 1 cut(s) 132
PshBI ATTAAT 1 cut(s) 420
Psp124BI GAGCTC 2 cut(s) 8, 522
PspPI GGNCC 1 cut(s) 414
RseI CAYNNNNRTG 1 cut(s) 285
SacI GAGCTC 2 cut(s) 8, 522
SaqAI TTAA 3 cut(s) 420, 437, 458
SatI GCNGC 2 cut(s) 58, 486
Sau3AI GATC 1 cut(s) 298
Sau96I GGNCC 1 cut(s) 414
SchI GAGTC 1 cut(s) 302
SduI GDGCHC 4 cut(s) 8, 156, 223, 522
SetI ASST 9 cut(s) 8, 67, 75, 172, 313, 388, 522, 533, 601
SfaNI GCATC 2 cut(s) 36, 259
SinI GGWCC 1 cut(s) 414
SmiMI CAYNNNNRTG 1 cut(s) 285
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 3 cut(s) 314, 421, 500
SspMI CTAG 2 cut(s) 74, 350
SstI GAGCTC 2 cut(s) 8, 522
TaaI ACNGT 4 cut(s) 113, 250, 334, 366
TaiI ACGT 1 cut(s) 601
TaqI TCGA 1 cut(s) 291
TasI AATT 3 cut(s) 314, 421, 500
Tru1I TTAA 3 cut(s) 420, 437, 458
Tru9I TTAA 3 cut(s) 420, 437, 458
TscAI CASTG 1 cut(s) 261
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 2 cut(s) 57, 485
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 1 cut(s) 321
TspGWI ACGGA 1 cut(s) 177
TspRI CASTG 1 cut(s) 261
Van91I CCANNNNNTGG 1 cut(s) 389
VpaK11BI GGWCC 1 cut(s) 414
VspI ATTAAT 1 cut(s) 420
XapI RAATTY 2 cut(s) 314, 500
XceI RCATGY 1 cut(s) 136
XcmI CCANNNNNNNNNTGG 1 cut(s) 390
XspI CTAG 2 cut(s) 74, 350
ZraI GACGTC 1 cut(s) 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.