Rh2AG399600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0018666
Physical Location & Seq
Forward (+)
59557425 .. 59558488
1064 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG399600.1

Sequence Viewer

Length: 600 bp
ATGAGCTCAACTGGTGGGGAGGAAGCAAATGATGATGGGATGCAGTTAGGCAGCGAATCTGACGACCTAGCGGGCGAGTATCTTCACCACAAGACATTCAACGACCGTATCTTGTATCTTACCAACATGTTCGGCGTCTGTGTCGTGCTCAAGAACGGAGGAGGTTTCGGAAGTAGTCCGTCTCCCTTTGTCACAGACTTCCTTACCACGCGTGCCCTTCTTCTGGCTTTGTCCCTCTACACCGTCTCACTGGCTACTGCTGATGCCCAAACTCACTCCAATGTCGAGTCCGATCCGGATGAAGCTGAATTCACGAATAACATTACCGTCGTCTGTGGCACTCTAGTCTTGACTTTACAGTTGTTTCTTCTTGTTCCAGCTTTTGGGTGGTTAGCCCTCGTCTCTTGGACCATTAATTTGGTGAGAGTTTTAACAAAATCGTGGTGCTACTTAAAGAGATTGTATCAAACTAAAGTTGCAGCAGTAGTTGACGAATTCAAGACTTTGAAGGCGCTCATCGTGAGGTGTCTTGCCGGATTGAAGACTTTGAGGGATGGCGACACCACCCACGAAACAGAGGAGGAGAATGGACGTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

21.78

Weight (kDa)

4.83

Isoelectric Point (pI)

32.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018666)

Species Orthologous Gene IDs
rosa_laevigata RLG00000019738
rosa_multiflora Rmu_co8439821.1_g000001 Rmu_sc0002475.1_g000003 Rmu_sc0006186.1_g000001
rosa_roxburghii Rroxscaffold_2G00106320
rosa_samantha Rh2AG399600 Rh2BG408600 Rh2CG386000 Rh2DG419400
rosa_wichuraiana Rw2G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 595
AccB7I CCANNNNNTGG 1 cut(s) 383
AccII CGCG 1 cut(s) 211
AccIII TCCGGA 1 cut(s) 295
AciI CCGC 1 cut(s) 71
AclWI GGATC 1 cut(s) 287
AcsI RAATTY 2 cut(s) 308, 494
AcyI GRCGYC 2 cut(s) 135, 592
AfiI CCNNNNNNNGG 2 cut(s) 223, 383
AflIII ACRYGT 2 cut(s) 126, 209
AgsI TTSAA 4 cut(s) 100, 499, 508, 541
AluBI AGCT 3 cut(s) 6, 305, 380
AluI AGCT 3 cut(s) 6, 305, 380
Alw21I GWGCWC 2 cut(s) 8, 150
Alw26I GTCTC 3 cut(s) 186, 250, 406
AlwI GGATC 1 cut(s) 287
Aor13HI TCCGGA 1 cut(s) 295
ApeKI GCWGC 2 cut(s) 51, 479
ApoI RAATTY 2 cut(s) 308, 494
ArsI GACNNNNNNTTYG 2 cut(s) 400, 432
AseI ATTAAT 1 cut(s) 414
AspLEI GCGC 1 cut(s) 514
AspS9I GGNCC 1 cut(s) 408
AsuHPI GGTGA 2 cut(s) 77, 433
AvaII GGWCC 1 cut(s) 408
BaeGI GKGCMC 1 cut(s) 217
BaeI ACNNNNGTAYC 2 cut(s) 91, 124
BanII GRGCYC 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 548
Bbv12I GWGCWC 2 cut(s) 8, 150
BbvI GCAGC 2 cut(s) 63, 491
BccI CCATC 2 cut(s) 29, 548
BcoDI GTCTC 3 cut(s) 186, 250, 406
BfaI CTAG 2 cut(s) 68, 344
BfoI RGCGCY 1 cut(s) 515
BisI GCNGC 2 cut(s) 52, 480
BlsI GCNGC 2 cut(s) 53, 481
Bme18I GGWCC 1 cut(s) 408
BmgT120I GGNCC 1 cut(s) 408
BmsI GCATC 2 cut(s) 30, 253
BpiI GAAGAC 1 cut(s) 548
BpuEI CTTGAG 1 cut(s) 134
BsaHI GRCGYC 2 cut(s) 135, 592
BsaWI WCCGGW 1 cut(s) 295
Bsc4I CCNNNNNNNGG 2 cut(s) 223, 383
Bse1I ACTGG 2 cut(s) 16, 255
BseAI TCCGGA 1 cut(s) 295
BseGI GGATG 3 cut(s) 45, 304, 559
BseLI CCNNNNNNNGG 2 cut(s) 223, 383
BseNI ACTGG 2 cut(s) 16, 255
BseRI GAGGAG 3 cut(s) 174, 593, 596
BseSI GKGCMC 1 cut(s) 217
BseXI GCAGC 2 cut(s) 63, 491
Bsh1236I CGCG 1 cut(s) 211
Bsh1285I CGRYCG 1 cut(s) 106
BsiEI CGRYCG 1 cut(s) 106
BsiHKAI GWGCWC 2 cut(s) 8, 150
BsiSI CCGG 2 cut(s) 296, 534
BslFI GGGAC 1 cut(s) 217
BslI CCNNNNNNNGG 2 cut(s) 223, 383
BsmAI GTCTC 3 cut(s) 186, 250, 406
BsmBI CGTCTC 3 cut(s) 186, 250, 406
BsmFI GGGAC 1 cut(s) 217
Bsp1286I GDGCHC 3 cut(s) 8, 150, 217
Bsp13I TCCGGA 1 cut(s) 295
Bsp143I GATC 1 cut(s) 292
BspACI CCGC 1 cut(s) 71
BspEI TCCGGA 1 cut(s) 295
BspFNI CGCG 1 cut(s) 211
BspPI GGATC 1 cut(s) 287
BsrI ACTGG 2 cut(s) 16, 255
BssMI GATC 1 cut(s) 292
BssNI GRCGYC 2 cut(s) 135, 592
Bst4CI ACNGT 4 cut(s) 107, 244, 328, 360
BstACI GRCGYC 2 cut(s) 135, 592
BstC8I GCNNGC 2 cut(s) 73, 213
BstF5I GGATG 3 cut(s) 45, 304, 559
BstFNI CGCG 1 cut(s) 211
BstH2I RGCGCY 1 cut(s) 515
BstHHI GCGC 1 cut(s) 514
BstKTI GATC 1 cut(s) 295
BstMAI GTCTC 3 cut(s) 186, 250, 406
BstMBI GATC 1 cut(s) 292
BstMCI CGRYCG 1 cut(s) 106
BstNSI RCATGY 1 cut(s) 130
BstSLI GKGCMC 1 cut(s) 217
BstUI CGCG 1 cut(s) 211
BstV1I GCAGC 2 cut(s) 63, 491
BstV2I GAAGAC 1 cut(s) 548
BstXI CCANNNNNNTGG 1 cut(s) 418
BtsCI GGATG 3 cut(s) 45, 304, 559
BtsIMutI CAGTG 1 cut(s) 248
Cac8I GCNNGC 2 cut(s) 73, 213
CfoI GCGC 1 cut(s) 514
Cfr13I GGNCC 1 cut(s) 408
CseI GACGC 1 cut(s) 124
CviAII CATG 1 cut(s) 127
CviJI RGCY 6 cut(s) 6, 227, 254, 305, 380, 395
CviKI_1 RGCY 6 cut(s) 6, 227, 254, 305, 380, 395
DpnI GATC 1 cut(s) 294
DpnII GATC 1 cut(s) 292
Ecl136II GAGCTC 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 408
Eco53kI GAGCTC 1 cut(s) 6
EcoICRI GAGCTC 1 cut(s) 6
EcoRI GAATTC 2 cut(s) 308, 494
EcoT38I GRGCYC 1 cut(s) 8
Esp3I CGTCTC 3 cut(s) 186, 250, 406
FaeI CATG 1 cut(s) 130
FaiI YATR 1 cut(s) 128
FaqI GGGAC 1 cut(s) 217
FatI CATG 1 cut(s) 126
FauI CCCGC 1 cut(s) 64
Fnu4HI GCNGC 2 cut(s) 52, 480
FokI GGATG 3 cut(s) 52, 311, 566
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 2 cut(s) 52, 480
FspBI CTAG 2 cut(s) 68, 344
GlaI GCGC 1 cut(s) 513
GluI GCNGC 2 cut(s) 52, 480
HaeII RGCGCY 1 cut(s) 515
HapII CCGG 2 cut(s) 296, 534
HgaI GACGC 1 cut(s) 124
HhaI GCGC 1 cut(s) 514
Hin1I GRCGYC 2 cut(s) 135, 592
Hin1II CATG 1 cut(s) 130
Hin6I GCGC 1 cut(s) 512
HinP1I GCGC 1 cut(s) 512
HincII GTYRAC 1 cut(s) 490
HindII GTYRAC 1 cut(s) 490
HinfI GANTC 2 cut(s) 56, 287
HpaII CCGG 2 cut(s) 296, 534
HphI GGTGA 2 cut(s) 77, 433
Hpy166II GTNNAC 1 cut(s) 490
Hpy188I TCNGA 3 cut(s) 61, 170, 292
Hpy188III TCNNGA 6 cut(s) 151, 296, 313, 349, 499, 520
Hpy8I GTNNAC 1 cut(s) 490
Hpy99I CGWCG 1 cut(s) 332
HpyAV CCTTC 2 cut(s) 227, 502
HpyCH4III ACNGT 4 cut(s) 107, 244, 328, 360
HpyCH4IV ACGT 1 cut(s) 592
HpyCH4V TGCA 2 cut(s) 43, 479
HpySE526I ACGT 1 cut(s) 592
Hsp92I GRCGYC 2 cut(s) 135, 592
Hsp92II CATG 1 cut(s) 130
HspAI GCGC 1 cut(s) 512
Kpn2I TCCGGA 1 cut(s) 295
Kzo9I GATC 1 cut(s) 292
LpnPI CCDG 5 cut(s) 209, 236, 309, 390, 547
Lsp1109I GCAGC 2 cut(s) 63, 491
LweI GCATC 2 cut(s) 30, 253
MaeI CTAG 2 cut(s) 68, 344
MaeII ACGT 1 cut(s) 592
MaeIII GTNAC 1 cut(s) 190
MalI GATC 1 cut(s) 294
MboI GATC 1 cut(s) 292
MboII GAAGA 4 cut(s) 74, 212, 359, 553
MhlI GDGCHC 3 cut(s) 8, 150, 217
MluCI AATT 3 cut(s) 308, 415, 494
MluI ACGCGT 1 cut(s) 209
MlyI GAGTC 1 cut(s) 296
MnlI CCTC 9 cut(s) 13, 152, 155, 245, 407, 516, 543, 571, 574
MroI TCCGGA 1 cut(s) 295
MseI TTAA 3 cut(s) 414, 431, 452
MslI CAYNNNNRTG 1 cut(s) 279
MspI CCGG 2 cut(s) 296, 534
MvnI CGCG 1 cut(s) 211
NdeII GATC 1 cut(s) 292
NlaIII CATG 1 cut(s) 130
NmuCI GTSAC 1 cut(s) 190
NspI RCATGY 1 cut(s) 130
PciI ACATGT 1 cut(s) 126
PfeI GAWTC 1 cut(s) 56
PflMI CCANNNNNTGG 1 cut(s) 383
PkrI GCNGC 2 cut(s) 53, 481
PleI GAGTC 1 cut(s) 295
PpsI GAGTC 1 cut(s) 295
PscI ACATGT 1 cut(s) 126
PshBI ATTAAT 1 cut(s) 414
Psp124BI GAGCTC 1 cut(s) 8
PspPI GGNCC 1 cut(s) 408
RseI CAYNNNNRTG 1 cut(s) 279
SacI GAGCTC 1 cut(s) 8
SaqAI TTAA 3 cut(s) 414, 431, 452
SatI GCNGC 2 cut(s) 52, 480
Sau3AI GATC 1 cut(s) 292
Sau96I GGNCC 1 cut(s) 408
SchI GAGTC 1 cut(s) 296
SduI GDGCHC 3 cut(s) 8, 150, 217
SetI ASST 7 cut(s) 8, 69, 166, 307, 382, 527, 595
SfaNI GCATC 2 cut(s) 30, 253
SinI GGWCC 1 cut(s) 408
SmiMI CAYNNNNRTG 1 cut(s) 279
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse9I AATT 3 cut(s) 308, 415, 494
SsiI CCGC 1 cut(s) 71
SspMI CTAG 2 cut(s) 68, 344
SstI GAGCTC 1 cut(s) 8
TaaI ACNGT 4 cut(s) 107, 244, 328, 360
TaiI ACGT 1 cut(s) 595
TaqI TCGA 1 cut(s) 285
TasI AATT 3 cut(s) 308, 415, 494
TfiI GAWTC 1 cut(s) 56
Tru1I TTAA 3 cut(s) 414, 431, 452
Tru9I TTAA 3 cut(s) 414, 431, 452
TscAI CASTG 1 cut(s) 255
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 2 cut(s) 51, 479
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 1 cut(s) 315
TspGWI ACGGA 2 cut(s) 168, 171
TspRI CASTG 1 cut(s) 255
Van91I CCANNNNNTGG 1 cut(s) 383
VpaK11BI GGWCC 1 cut(s) 408
VspI ATTAAT 1 cut(s) 414
XapI RAATTY 2 cut(s) 308, 494
XceI RCATGY 1 cut(s) 130
XcmI CCANNNNNNNNNTGG 1 cut(s) 384
XspI CTAG 2 cut(s) 68, 344
ZraI GACGTC 1 cut(s) 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.