Rh2BG408600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0018666
Physical Location & Seq
Reverse (-)
57918145 .. 57921226
3082 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG408600.1

Sequence Viewer

Length: 615 bp
ATGAGCTCAACAGGTGGGGTCCGTGGGGAGGAAGCAAATGATGATGGGACGCAGTTAGGCACCGAAGCTGACGACCTAGCAGTAGCAGGCGAGTATCTTCACCACAAGACCCTCAACGACCGTATATTGTATCTTACCAACATGTTCGGAGTCTGTGTCGTGCTCAAGAACGGAGGAGGTTTCGGAAGTAGTCCGTCTCCCTTTGTCACAGACTTCCTTACCACGCGTGCCCTTCTTCTGGTTTTGTCCCTCTACACCGTCTCACTGGCATCTGTTGATGCCCAAACTCACTCCAATGTCGAGTCCGATCCGGATGAAGCTGAATTCAGGAATAACATTACCGTCGTCTGTGGCACTCTAGTCTTAACTTTACAGTTGTTTCTTCTTGTTCCAGCTTTTGGGTGGTTAGCCCTCGTCTCTTGGACCATTAATTTGGTGAGGGTTTTAACAAAATCGTGGTGCTACTTAAAGAGATTGTATCAAACTAAAGTTGCAGCAGTAGTTGACGAATTCAAGACTTTGAAGGAGCTCATCGTGAGGTGTCTTGCCGGATTGAAGACTTTGAGGGATGGCGACACCACCCACGAAACAGAGGAGGAGAATGGACGTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

204

Amino Acids

22.36

Weight (kDa)

4.97

Isoelectric Point (pI)

29.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018666)

Species Orthologous Gene IDs
rosa_laevigata RLG00000019738
rosa_multiflora Rmu_co8439821.1_g000001 Rmu_sc0002475.1_g000003 Rmu_sc0006186.1_g000001
rosa_roxburghii Rroxscaffold_2G00106320
rosa_samantha Rh2AG399600 Rh2BG408600 Rh2CG386000 Rh2DG419400
rosa_wichuraiana Rw2G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 610
AccB1I GGYRCC 1 cut(s) 59
AccB7I CCANNNNNTGG 1 cut(s) 398
AccII CGCG 1 cut(s) 226
AccIII TCCGGA 1 cut(s) 310
AclWI GGATC 1 cut(s) 302
AcsI RAATTY 2 cut(s) 323, 509
AcyI GRCGYC 1 cut(s) 607
AfiI CCNNNNNNNGG 3 cut(s) 28, 238, 398
AflIII ACRYGT 2 cut(s) 141, 224
AgsI TTSAA 3 cut(s) 514, 523, 556
AluBI AGCT 5 cut(s) 6, 68, 320, 395, 529
AluI AGCT 5 cut(s) 6, 68, 320, 395, 529
Alw21I GWGCWC 3 cut(s) 8, 165, 531
Alw26I GTCTC 3 cut(s) 201, 265, 421
AlwI GGATC 1 cut(s) 302
Aor13HI TCCGGA 1 cut(s) 310
ApeKI GCWGC 1 cut(s) 494
ApoI RAATTY 2 cut(s) 323, 509
ArsI GACNNNNNNTTYG 2 cut(s) 415, 447
AseI ATTAAT 1 cut(s) 429
AspS9I GGNCC 2 cut(s) 19, 423
AsuHPI GGTGA 2 cut(s) 92, 448
AvaII GGWCC 2 cut(s) 19, 423
BaeGI GKGCMC 1 cut(s) 232
BanI GGYRCC 1 cut(s) 59
BanII GRGCYC 2 cut(s) 8, 531
BbsI GAAGAC 1 cut(s) 563
Bbv12I GWGCWC 3 cut(s) 8, 165, 531
BbvI GCAGC 1 cut(s) 506
BccI CCATC 2 cut(s) 38, 563
BcoDI GTCTC 3 cut(s) 201, 265, 421
BfaI CTAG 2 cut(s) 77, 359
BisI GCNGC 1 cut(s) 495
BlsI GCNGC 1 cut(s) 496
Bme18I GGWCC 2 cut(s) 19, 423
BmgT120I GGNCC 2 cut(s) 19, 423
BmiI GGNNCC 2 cut(s) 20, 61
BmsI GCATC 2 cut(s) 268, 278
BpiI GAAGAC 1 cut(s) 563
BpuEI CTTGAG 1 cut(s) 149
BsaHI GRCGYC 1 cut(s) 607
BsaJI CCNNGG 1 cut(s) 22
BsaWI WCCGGW 1 cut(s) 310
BsaXI ACNNNNNCTCC 2 cut(s) 141, 171
Bsc4I CCNNNNNNNGG 3 cut(s) 28, 238, 398
Bse1I ACTGG 1 cut(s) 270
BseAI TCCGGA 1 cut(s) 310
BseDI CCNNGG 1 cut(s) 22
BseGI GGATG 2 cut(s) 319, 574
BseLI CCNNNNNNNGG 3 cut(s) 28, 238, 398
BseNI ACTGG 1 cut(s) 270
BseRI GAGGAG 3 cut(s) 189, 608, 611
BseSI GKGCMC 1 cut(s) 232
BseXI GCAGC 1 cut(s) 506
Bsh1236I CGCG 1 cut(s) 226
Bsh1285I CGRYCG 1 cut(s) 121
BshNI GGYRCC 1 cut(s) 59
BsiEI CGRYCG 1 cut(s) 121
BsiHKAI GWGCWC 3 cut(s) 8, 165, 531
BsiSI CCGG 2 cut(s) 311, 549
BslFI GGGAC 2 cut(s) 61, 232
BslI CCNNNNNNNGG 3 cut(s) 28, 238, 398
BsmAI GTCTC 3 cut(s) 201, 265, 421
BsmBI CGTCTC 3 cut(s) 201, 265, 421
BsmFI GGGAC 2 cut(s) 61, 232
Bsp1286I GDGCHC 4 cut(s) 8, 165, 232, 531
Bsp13I TCCGGA 1 cut(s) 310
Bsp143I GATC 1 cut(s) 307
BspEI TCCGGA 1 cut(s) 310
BspFNI CGCG 1 cut(s) 226
BspLI GGNNCC 2 cut(s) 20, 61
BspPI GGATC 1 cut(s) 302
BspT107I GGYRCC 1 cut(s) 59
BsrI ACTGG 1 cut(s) 270
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 1 cut(s) 307
BssNI GRCGYC 1 cut(s) 607
Bst4CI ACNGT 4 cut(s) 122, 259, 343, 375
BstACI GRCGYC 1 cut(s) 607
BstC8I GCNNGC 2 cut(s) 88, 228
BstDSI CCRYGG 1 cut(s) 22
BstF5I GGATG 2 cut(s) 319, 574
BstFNI CGCG 1 cut(s) 226
BstKTI GATC 1 cut(s) 310
BstMAI GTCTC 3 cut(s) 201, 265, 421
BstMBI GATC 1 cut(s) 307
BstMCI CGRYCG 1 cut(s) 121
BstNSI RCATGY 1 cut(s) 145
BstSLI GKGCMC 1 cut(s) 232
BstUI CGCG 1 cut(s) 226
BstV1I GCAGC 1 cut(s) 506
BstV2I GAAGAC 1 cut(s) 563
BstXI CCANNNNNNTGG 1 cut(s) 433
BtgI CCRYGG 1 cut(s) 22
BtsCI GGATG 2 cut(s) 319, 574
BtsIMutI CAGTG 1 cut(s) 263
Cac8I GCNNGC 2 cut(s) 88, 228
Cfr13I GGNCC 2 cut(s) 19, 423
CseI GACGC 1 cut(s) 58
CviAII CATG 1 cut(s) 142
CviJI RGCY 6 cut(s) 6, 68, 320, 395, 410, 529
CviKI_1 RGCY 6 cut(s) 6, 68, 320, 395, 410, 529
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
Ecl136II GAGCTC 2 cut(s) 6, 529
Eco24I GRGCYC 2 cut(s) 8, 531
Eco47I GGWCC 2 cut(s) 19, 423
Eco53kI GAGCTC 2 cut(s) 6, 529
EcoICRI GAGCTC 2 cut(s) 6, 529
EcoRI GAATTC 2 cut(s) 323, 509
EcoT38I GRGCYC 2 cut(s) 8, 531
Esp3I CGTCTC 3 cut(s) 201, 265, 421
FaeI CATG 1 cut(s) 145
FaiI YATR 2 cut(s) 125, 143
FaqI GGGAC 2 cut(s) 61, 232
FatI CATG 1 cut(s) 141
Fnu4HI GCNGC 1 cut(s) 495
FokI GGATG 2 cut(s) 326, 581
FriOI GRGCYC 2 cut(s) 8, 531
Fsp4HI GCNGC 1 cut(s) 495
FspBI CTAG 2 cut(s) 77, 359
GluI GCNGC 1 cut(s) 495
HapII CCGG 2 cut(s) 311, 549
HgaI GACGC 1 cut(s) 58
Hin1I GRCGYC 1 cut(s) 607
Hin1II CATG 1 cut(s) 145
HincII GTYRAC 1 cut(s) 505
HindII GTYRAC 1 cut(s) 505
HinfI GANTC 2 cut(s) 150, 302
HpaII CCGG 2 cut(s) 311, 549
HphI GGTGA 2 cut(s) 92, 448
Hpy166II GTNNAC 1 cut(s) 505
Hpy188I TCNGA 3 cut(s) 149, 185, 307
Hpy188III TCNNGA 5 cut(s) 166, 311, 328, 514, 535
Hpy8I GTNNAC 1 cut(s) 505
Hpy99I CGWCG 1 cut(s) 347
HpyAV CCTTC 2 cut(s) 242, 517
HpyCH4III ACNGT 4 cut(s) 122, 259, 343, 375
HpyCH4IV ACGT 1 cut(s) 607
HpyCH4V TGCA 1 cut(s) 494
HpySE526I ACGT 1 cut(s) 607
Hsp92I GRCGYC 1 cut(s) 607
Hsp92II CATG 1 cut(s) 145
Kpn2I TCCGGA 1 cut(s) 310
Kzo9I GATC 1 cut(s) 307
LmnI GCTCC 1 cut(s) 526
LpnPI CCDG 7 cut(s) 72, 224, 251, 313, 324, 405, 562
Lsp1109I GCAGC 1 cut(s) 506
LweI GCATC 2 cut(s) 268, 278
MaeI CTAG 2 cut(s) 77, 359
MaeII ACGT 1 cut(s) 607
MaeIII GTNAC 1 cut(s) 205
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MboII GAAGA 4 cut(s) 89, 227, 374, 568
MhlI GDGCHC 4 cut(s) 8, 165, 232, 531
MluCI AATT 3 cut(s) 323, 430, 509
MluI ACGCGT 1 cut(s) 224
MlyI GAGTC 2 cut(s) 159, 311
MroI TCCGGA 1 cut(s) 310
MseI TTAA 4 cut(s) 365, 429, 446, 467
MslI CAYNNNNRTG 1 cut(s) 294
MspI CCGG 2 cut(s) 311, 549
MvnI CGCG 1 cut(s) 226
NdeII GATC 1 cut(s) 307
NlaIII CATG 1 cut(s) 145
NlaIV GGNNCC 2 cut(s) 20, 61
NmuCI GTSAC 1 cut(s) 205
NspI RCATGY 1 cut(s) 145
PciI ACATGT 1 cut(s) 141
PflMI CCANNNNNTGG 1 cut(s) 398
PkrI GCNGC 1 cut(s) 496
PleI GAGTC 2 cut(s) 158, 310
PpsI GAGTC 2 cut(s) 158, 310
PscI ACATGT 1 cut(s) 141
PshBI ATTAAT 1 cut(s) 429
Psp124BI GAGCTC 2 cut(s) 8, 531
PspN4I GGNNCC 2 cut(s) 20, 61
PspPI GGNCC 2 cut(s) 19, 423
RseI CAYNNNNRTG 1 cut(s) 294
SacI GAGCTC 2 cut(s) 8, 531
SaqAI TTAA 4 cut(s) 365, 429, 446, 467
SatI GCNGC 1 cut(s) 495
Sau3AI GATC 1 cut(s) 307
Sau96I GGNCC 2 cut(s) 19, 423
SchI GAGTC 2 cut(s) 159, 311
SduI GDGCHC 4 cut(s) 8, 165, 232, 531
SfaNI GCATC 2 cut(s) 268, 278
SinI GGWCC 2 cut(s) 19, 423
SmiMI CAYNNNNRTG 1 cut(s) 294
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
Sse9I AATT 3 cut(s) 323, 430, 509
SspMI CTAG 2 cut(s) 77, 359
SstI GAGCTC 2 cut(s) 8, 531
TaaI ACNGT 4 cut(s) 122, 259, 343, 375
TaiI ACGT 1 cut(s) 610
TaqI TCGA 1 cut(s) 300
TasI AATT 3 cut(s) 323, 430, 509
Tru1I TTAA 4 cut(s) 365, 429, 446, 467
Tru9I TTAA 4 cut(s) 365, 429, 446, 467
TscAI CASTG 1 cut(s) 270
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 1 cut(s) 494
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 1 cut(s) 330
TspGWI ACGGA 3 cut(s) 11, 183, 186
TspRI CASTG 1 cut(s) 270
Van91I CCANNNNNTGG 1 cut(s) 398
VpaK11BI GGWCC 2 cut(s) 19, 423
VspI ATTAAT 1 cut(s) 429
XapI RAATTY 2 cut(s) 323, 509
XceI RCATGY 1 cut(s) 145
XcmI CCANNNNNNNNNTGG 1 cut(s) 399
XspI CTAG 2 cut(s) 77, 359
ZraI GACGTC 1 cut(s) 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.