Rmu_sc0006186.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006186.1
OG0018666
Physical Location & Seq
Reverse (-)
1730 .. 2506
777 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006186.1_g000001.1.cds

Sequence Viewer

Length: 777 bp
atgcggtatgagccaaatacagaacaaggagcagagcaaggaggaggaaaggggaggaggcacggaggggctttgaggagaaaggaggagacggggaggaggagaagaagagtggcaaggagtacaaaggagaagatcgaggaggagggccaggagctcgaagtacaaaggatgagctcaacaggtggggaggaaccaaatgatgatgggacgcagttaggcaccgaagctgacgacctagcagtagcaggcgagtatcttcaccacaagacactcaacgaccgtatattgtatcttaccaacatgttcggagtctgtgtcgtgctcaagaacggaggaggtttcggaagtagtccgtctccctttgtcacagacttccttaccacgcgtgcccttcttctggctttgtccctctacaccgtctcactgggtattgttgatgcccagactcactccaatgtcgagtccgatccagatgaagctgaattcaggaataacattaccgtcgtctgtggcactctagtcttgactttacagttgtttcttcttgttccagcttttgggtggttagccctcgtctcttggaccattaatttggtgagggttttaacaaaatcgtggtgctacttaaagagattgtatcaaactaaagttgcagcagtagttgacgaattcaagactttgaaggagctcatcgtgaggtgtcttgccggattgaagactttgagggatggcgacaccacccacgaaacagaggaggagaatggacgtccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

258

Amino Acids

28.67

Weight (kDa)

5.83

Isoelectric Point (pI)

49.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018666)

Species Orthologous Gene IDs
rosa_laevigata RLG00000019738
rosa_multiflora Rmu_co8439821.1_g000001 Rmu_sc0002475.1_g000003 Rmu_sc0006186.1_g000001
rosa_roxburghii Rroxscaffold_2G00106320
rosa_samantha Rh2AG399600 Rh2BG408600 Rh2CG386000 Rh2DG419400
rosa_wichuraiana Rw2G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 772
AccB1I GGYRCC 1 cut(s) 221
AccB7I CCANNNNNTGG 1 cut(s) 560
AccII CGCG 1 cut(s) 388
AciI CCGC 1 cut(s) 4
AclWI GGATC 1 cut(s) 464
AcsI RAATTY 2 cut(s) 485, 671
AcyI GRCGYC 1 cut(s) 769
AfaI GTAC 2 cut(s) 124, 165
AfiI CCNNNNNNNGG 2 cut(s) 400, 560
AflIII ACRYGT 2 cut(s) 303, 386
AgsI TTSAA 3 cut(s) 676, 685, 718
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 6 cut(s) 157, 177, 230, 482, 557, 691
AluI AGCT 6 cut(s) 157, 177, 230, 482, 557, 691
Alw21I GWGCWC 4 cut(s) 159, 179, 327, 693
Alw26I GTCTC 4 cut(s) 83, 363, 427, 583
AlwI GGATC 1 cut(s) 464
AoxI GGCC 1 cut(s) 148
ApeKI GCWGC 1 cut(s) 656
ApoI RAATTY 2 cut(s) 485, 671
ArsI GACNNNNNNTTYG 2 cut(s) 577, 609
AseI ATTAAT 1 cut(s) 591
AspS9I GGNCC 2 cut(s) 148, 585
AsuHPI GGTGA 2 cut(s) 254, 610
AvaII GGWCC 1 cut(s) 585
BaeGI GKGCMC 1 cut(s) 394
BanI GGYRCC 1 cut(s) 221
BanII GRGCYC 3 cut(s) 159, 179, 693
BbsI GAAGAC 1 cut(s) 725
Bbv12I GWGCWC 4 cut(s) 159, 179, 327, 693
BbvI GCAGC 1 cut(s) 668
BccI CCATC 2 cut(s) 200, 725
BciT130I CCWGG 1 cut(s) 152
BcoDI GTCTC 4 cut(s) 83, 363, 427, 583
BfaI CTAG 2 cut(s) 239, 521
BisI GCNGC 1 cut(s) 657
BlsI GCNGC 1 cut(s) 658
Bme1390I CCNGG 1 cut(s) 152
Bme18I GGWCC 1 cut(s) 585
BmgT120I GGNCC 2 cut(s) 148, 585
BmiI GGNNCC 2 cut(s) 195, 223
BmrFI CCNGG 1 cut(s) 152
BmrI ACTGGG 1 cut(s) 437
BmsI GCATC 1 cut(s) 430
BmuI ACTGGG 1 cut(s) 437
BpiI GAAGAC 1 cut(s) 725
BpuEI CTTGAG 1 cut(s) 311
BsaHI GRCGYC 1 cut(s) 769
BsaXI ACNNNNNCTCC 2 cut(s) 303, 333
Bsc4I CCNNNNNNNGG 2 cut(s) 400, 560
Bse1I ACTGG 1 cut(s) 432
BseBI CCWGG 1 cut(s) 152
BseGI GGATG 2 cut(s) 177, 736
BseLI CCNNNNNNNGG 2 cut(s) 400, 560
BseNI ACTGG 1 cut(s) 432
BseSI GKGCMC 1 cut(s) 394
BseXI GCAGC 1 cut(s) 668
Bsh1236I CGCG 1 cut(s) 388
Bsh1285I CGRYCG 1 cut(s) 283
BshFI GGCC 1 cut(s) 150
BshNI GGYRCC 1 cut(s) 221
BsiEI CGRYCG 1 cut(s) 283
BsiHKAI GWGCWC 4 cut(s) 159, 179, 327, 693
BsiSI CCGG 1 cut(s) 711
BslFI GGGAC 2 cut(s) 223, 394
BslI CCNNNNNNNGG 2 cut(s) 400, 560
BsmAI GTCTC 4 cut(s) 83, 363, 427, 583
BsmBI CGTCTC 4 cut(s) 83, 363, 427, 583
BsmFI GGGAC 2 cut(s) 223, 394
BsnI GGCC 1 cut(s) 150
Bsp1286I GDGCHC 5 cut(s) 159, 179, 327, 394, 693
Bsp143I GATC 2 cut(s) 135, 469
BspACI CCGC 1 cut(s) 4
BspANI GGCC 1 cut(s) 150
BspFNI CGCG 1 cut(s) 388
BspLI GGNNCC 2 cut(s) 195, 223
BspPI GGATC 1 cut(s) 464
BspT107I GGYRCC 1 cut(s) 221
BsrI ACTGG 1 cut(s) 432
BssMI GATC 2 cut(s) 135, 469
BssNI GRCGYC 1 cut(s) 769
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 4 cut(s) 284, 421, 505, 537
Bst6I CTCTTC 1 cut(s) 103
BstACI GRCGYC 1 cut(s) 769
BstC8I GCNNGC 2 cut(s) 250, 390
BstF5I GGATG 2 cut(s) 177, 736
BstFNI CGCG 1 cut(s) 388
BstKTI GATC 2 cut(s) 138, 472
BstMAI GTCTC 4 cut(s) 83, 363, 427, 583
BstMBI GATC 2 cut(s) 135, 469
BstMCI CGRYCG 1 cut(s) 283
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 1 cut(s) 152
BstNSI RCATGY 1 cut(s) 307
BstSCI CCNGG 1 cut(s) 150
BstSLI GKGCMC 1 cut(s) 394
BstUI CGCG 1 cut(s) 388
BstV1I GCAGC 1 cut(s) 668
BstV2I GAAGAC 1 cut(s) 725
BstXI CCANNNNNNTGG 1 cut(s) 595
BsuRI GGCC 1 cut(s) 150
BtsCI GGATG 2 cut(s) 177, 736
BtsIMutI CAGTG 1 cut(s) 425
Cac8I GCNNGC 2 cut(s) 250, 390
Cfr13I GGNCC 2 cut(s) 148, 585
CseI GACGC 1 cut(s) 220
Csp6I GTAC 2 cut(s) 123, 164
CviAII CATG 1 cut(s) 304
CviQI GTAC 2 cut(s) 123, 164
DpnI GATC 2 cut(s) 137, 471
DpnII GATC 2 cut(s) 135, 469
Eam1104I CTCTTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 103
Ecl136II GAGCTC 3 cut(s) 157, 177, 691
Eco24I GRGCYC 3 cut(s) 159, 179, 693
Eco47I GGWCC 1 cut(s) 585
Eco53kI GAGCTC 3 cut(s) 157, 177, 691
EcoICRI GAGCTC 3 cut(s) 157, 177, 691
EcoRI GAATTC 2 cut(s) 485, 671
EcoRII CCWGG 1 cut(s) 150
EcoT38I GRGCYC 3 cut(s) 159, 179, 693
Esp3I CGTCTC 4 cut(s) 83, 363, 427, 583
FaeI CATG 1 cut(s) 307
FaiI YATR 3 cut(s) 9, 287, 305
FaqI GGGAC 2 cut(s) 223, 394
FatI CATG 1 cut(s) 303
Fnu4HI GCNGC 1 cut(s) 657
FokI GGATG 2 cut(s) 184, 743
FriOI GRGCYC 3 cut(s) 159, 179, 693
Fsp4HI GCNGC 1 cut(s) 657
FspBI CTAG 2 cut(s) 239, 521
GluI GCNGC 1 cut(s) 657
HaeIII GGCC 1 cut(s) 150
HapII CCGG 1 cut(s) 711
HgaI GACGC 1 cut(s) 220
Hin1I GRCGYC 1 cut(s) 769
Hin1II CATG 1 cut(s) 307
HincII GTYRAC 1 cut(s) 667
HindII GTYRAC 1 cut(s) 667
HinfI GANTC 3 cut(s) 312, 448, 464
HpaII CCGG 1 cut(s) 711
HphI GGTGA 2 cut(s) 254, 610
Hpy166II GTNNAC 1 cut(s) 667
Hpy188I TCNGA 3 cut(s) 311, 347, 469
Hpy188III TCNNGA 6 cut(s) 328, 473, 490, 526, 676, 697
Hpy8I GTNNAC 1 cut(s) 667
Hpy99I CGWCG 1 cut(s) 509
HpyAV CCTTC 2 cut(s) 404, 679
HpyCH4III ACNGT 4 cut(s) 284, 421, 505, 537
HpyCH4IV ACGT 1 cut(s) 769
HpyCH4V TGCA 1 cut(s) 656
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpySE526I ACGT 1 cut(s) 769
Hsp92I GRCGYC 1 cut(s) 769
Hsp92II CATG 1 cut(s) 307
Kzo9I GATC 2 cut(s) 135, 469
LmnI GCTCC 3 cut(s) 29, 154, 688
Lsp1109I GCAGC 1 cut(s) 668
LweI GCATC 1 cut(s) 430
MaeI CTAG 2 cut(s) 239, 521
MaeII ACGT 1 cut(s) 769
MaeIII GTNAC 1 cut(s) 367
MalI GATC 2 cut(s) 137, 471
MboI GATC 2 cut(s) 135, 469
MboII GAAGA 7 cut(s) 117, 120, 145, 251, 389, 536, 730
MhlI GDGCHC 5 cut(s) 159, 179, 327, 394, 693
MluCI AATT 3 cut(s) 485, 592, 671
MluI ACGCGT 1 cut(s) 386
MlyI GAGTC 3 cut(s) 321, 442, 473
MseI TTAA 3 cut(s) 591, 608, 629
MslI CAYNNNNRTG 1 cut(s) 456
MspI CCGG 1 cut(s) 711
MspR9I CCNGG 1 cut(s) 152
MvaI CCWGG 1 cut(s) 152
MvnI CGCG 1 cut(s) 388
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeII GATC 2 cut(s) 135, 469
NlaIII CATG 1 cut(s) 307
NlaIV GGNNCC 2 cut(s) 195, 223
NmuCI GTSAC 1 cut(s) 367
NspI RCATGY 1 cut(s) 307
PciI ACATGT 1 cut(s) 303
PflMI CCANNNNNTGG 1 cut(s) 560
PkrI GCNGC 1 cut(s) 658
PleI GAGTC 3 cut(s) 320, 442, 472
PpsI GAGTC 3 cut(s) 320, 442, 472
PscI ACATGT 1 cut(s) 303
PshBI ATTAAT 1 cut(s) 591
Psp124BI GAGCTC 3 cut(s) 159, 179, 693
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 2 cut(s) 195, 223
PspPI GGNCC 2 cut(s) 148, 585
RsaI GTAC 2 cut(s) 124, 165
RsaNI GTAC 2 cut(s) 123, 164
RseI CAYNNNNRTG 1 cut(s) 456
SacI GAGCTC 3 cut(s) 159, 179, 693
SaqAI TTAA 3 cut(s) 591, 608, 629
SatI GCNGC 1 cut(s) 657
Sau3AI GATC 2 cut(s) 135, 469
Sau96I GGNCC 2 cut(s) 148, 585
SchI GAGTC 3 cut(s) 321, 442, 473
ScrFI CCNGG 1 cut(s) 152
SduI GDGCHC 5 cut(s) 159, 179, 327, 394, 693
SfaNI GCATC 1 cut(s) 430
SinI GGWCC 1 cut(s) 585
SmiMI CAYNNNNRTG 1 cut(s) 456
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
Sse9I AATT 3 cut(s) 485, 592, 671
SsiI CCGC 1 cut(s) 4
SspMI CTAG 2 cut(s) 239, 521
SstI GAGCTC 3 cut(s) 159, 179, 693
StyD4I CCNGG 1 cut(s) 150
TaaI ACNGT 4 cut(s) 284, 421, 505, 537
TaiI ACGT 1 cut(s) 772
TaqI TCGA 3 cut(s) 138, 159, 462
TasI AATT 3 cut(s) 485, 592, 671
TatI WGTACW 2 cut(s) 122, 163
Tru1I TTAA 3 cut(s) 591, 608, 629
Tru9I TTAA 3 cut(s) 591, 608, 629
TscAI CASTG 1 cut(s) 432
TseFI GTSAC 1 cut(s) 367
TseI GCWGC 1 cut(s) 656
Tsp45I GTSAC 1 cut(s) 367
TspDTI ATGAA 1 cut(s) 492
TspGWI ACGGA 3 cut(s) 78, 345, 348
TspRI CASTG 1 cut(s) 432
Van91I CCANNNNNTGG 1 cut(s) 560
VpaK11BI GGWCC 1 cut(s) 585
VspI ATTAAT 1 cut(s) 591
XapI RAATTY 2 cut(s) 485, 671
XceI RCATGY 1 cut(s) 307
XcmI CCANNNNNNNNNTGG 1 cut(s) 561
XspI CTAG 2 cut(s) 239, 521
ZraI GACGTC 1 cut(s) 770
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.