Rroxscaffold_2G00106320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0018666
Physical Location & Seq
Reverse (-)
29887821 .. 29888438
618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00106320.1

Sequence Viewer

Length: 618 bp
ATGAGCTCAACAGCAGGGGAGGAAGCAAATGATGATGGGATGCAGTTAGGCAGCGGAGCTGACAATCTGGCAGTAGCAGGCGAGTATCTTCACCACAAGTCATTCAACGACCGTATCTTGTATCTTACCAACATGTTCGGCGTCTGTGTCGTGCTCAAGAACGGAGGAGGATCCGGAAGTAGTCCGTCTCCCTTTGTCACAGACTTCCTTACCACGCGTGCCCTTCTTCTAGCTTTGTCCCTCTACACCGCCTCACTGGCTACTGCTGATGCCCAAACTCACTCCAATGCCGAGTCCGATCCGGATGAAGCTGAATTCACGAATAACATTACCGTCGTCTGTGGCACTCTAGTCTTGACTTTACAGTTGTTTCTTCTTGTTCCAGCTTTTGGGTGGTTAGCCCTCGTCTCTTGGACCATTAATATGGTGAGGGTTTTAACAAAATCGTGGTGCTACTTGAAGAGATTGTATCAAAATAAAGTTGCAGCAGCATTTCCACAAGTAGTTGACGAATTCAAGACCTTGAAGGAGCTCATCGTGAGGTGCCTTGCCAGATTGAATACTTTGAGGGATGGCGACATCACCCACGAAACAGAGGAGGAGAATGGACGTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

22.38

Weight (kDa)

4.93

Isoelectric Point (pI)

31.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018666)

Species Orthologous Gene IDs
rosa_laevigata RLG00000019738
rosa_multiflora Rmu_co8439821.1_g000001 Rmu_sc0002475.1_g000003 Rmu_sc0006186.1_g000001
rosa_roxburghii Rroxscaffold_2G00106320
rosa_samantha Rh2AG399600 Rh2BG408600 Rh2CG386000 Rh2DG419400
rosa_wichuraiana Rw2G032520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 613
AccB1I GGYRCC 1 cut(s) 543
AccB7I CCANNNNNTGG 1 cut(s) 389
AccII CGCG 1 cut(s) 217
AccIII TCCGGA 2 cut(s) 173, 301
AciI CCGC 2 cut(s) 54, 249
AclWI GGATC 3 cut(s) 165, 178, 293
AcsI RAATTY 2 cut(s) 314, 512
AcyI GRCGYC 2 cut(s) 141, 610
AfiI CCNNNNNNNGG 1 cut(s) 389
AflIII ACRYGT 2 cut(s) 132, 215
AgsI TTSAA 5 cut(s) 106, 460, 517, 526, 559
AluBI AGCT 6 cut(s) 6, 59, 233, 311, 386, 532
AluI AGCT 6 cut(s) 6, 59, 233, 311, 386, 532
Alw21I GWGCWC 3 cut(s) 8, 156, 534
Alw26I GTCTC 2 cut(s) 192, 412
AlwI GGATC 3 cut(s) 165, 178, 293
Aor13HI TCCGGA 2 cut(s) 173, 301
ApeKI GCWGC 3 cut(s) 51, 485, 488
ApoI RAATTY 2 cut(s) 314, 512
AseI ATTAAT 1 cut(s) 420
AspS9I GGNCC 1 cut(s) 414
AsuHPI GGTGA 3 cut(s) 83, 439, 574
AvaII GGWCC 1 cut(s) 414
BaeGI GKGCMC 1 cut(s) 223
BaeI ACNNNNGTAYC 2 cut(s) 97, 130
BamHI GGATCC 1 cut(s) 170
BanI GGYRCC 1 cut(s) 543
BanII GRGCYC 2 cut(s) 8, 534
Bbv12I GWGCWC 3 cut(s) 8, 156, 534
BbvI GCAGC 3 cut(s) 63, 497, 500
BccI CCATC 2 cut(s) 29, 566
BcoDI GTCTC 2 cut(s) 192, 412
BfaI CTAG 2 cut(s) 230, 350
BglI GCCNNNNNGGC 1 cut(s) 257
BisI GCNGC 3 cut(s) 52, 486, 489
BlsI GCNGC 3 cut(s) 53, 487, 490
Bme18I GGWCC 1 cut(s) 414
BmgT120I GGNCC 1 cut(s) 414
BmiI GGNNCC 2 cut(s) 172, 545
BmsI GCATC 2 cut(s) 30, 259
BpuEI CTTGAG 1 cut(s) 140
BsaHI GRCGYC 2 cut(s) 141, 610
BsaWI WCCGGW 2 cut(s) 173, 301
Bsc4I CCNNNNNNNGG 1 cut(s) 389
Bse1I ACTGG 1 cut(s) 261
BseAI TCCGGA 2 cut(s) 173, 301
BseGI GGATG 3 cut(s) 45, 310, 577
BseLI CCNNNNNNNGG 1 cut(s) 389
BseNI ACTGG 1 cut(s) 261
BseRI GAGGAG 3 cut(s) 180, 611, 614
BseSI GKGCMC 1 cut(s) 223
BseXI GCAGC 3 cut(s) 63, 497, 500
Bsh1236I CGCG 1 cut(s) 217
Bsh1285I CGRYCG 1 cut(s) 112
BshNI GGYRCC 1 cut(s) 543
BsiEI CGRYCG 1 cut(s) 112
BsiHKAI GWGCWC 3 cut(s) 8, 156, 534
BsiSI CCGG 2 cut(s) 174, 302
BslFI GGGAC 1 cut(s) 223
BslI CCNNNNNNNGG 1 cut(s) 389
BsmAI GTCTC 2 cut(s) 192, 412
BsmBI CGTCTC 2 cut(s) 192, 412
BsmFI GGGAC 1 cut(s) 223
Bsp1286I GDGCHC 4 cut(s) 8, 156, 223, 534
Bsp13I TCCGGA 2 cut(s) 173, 301
Bsp143I GATC 2 cut(s) 170, 298
BspACI CCGC 2 cut(s) 54, 249
BspEI TCCGGA 2 cut(s) 173, 301
BspFNI CGCG 1 cut(s) 217
BspLI GGNNCC 2 cut(s) 172, 545
BspPI GGATC 3 cut(s) 165, 178, 293
BspT107I GGYRCC 1 cut(s) 543
BsrI ACTGG 1 cut(s) 261
BssMI GATC 2 cut(s) 170, 298
BssNI GRCGYC 2 cut(s) 141, 610
Bst4CI ACNGT 3 cut(s) 113, 334, 366
Bst6I CTCTTC 1 cut(s) 455
BstACI GRCGYC 2 cut(s) 141, 610
BstC8I GCNNGC 2 cut(s) 79, 219
BstF5I GGATG 3 cut(s) 45, 310, 577
BstFNI CGCG 1 cut(s) 217
BstKTI GATC 2 cut(s) 173, 301
BstMAI GTCTC 2 cut(s) 192, 412
BstMBI GATC 2 cut(s) 170, 298
BstMCI CGRYCG 1 cut(s) 112
BstMWI GCNNNNNNNGC 1 cut(s) 257
BstNSI RCATGY 1 cut(s) 136
BstSLI GKGCMC 1 cut(s) 223
BstUI CGCG 1 cut(s) 217
BstV1I GCAGC 3 cut(s) 63, 497, 500
BstX2I RGATCY 1 cut(s) 170
BstXI CCANNNNNNTGG 1 cut(s) 424
BstYI RGATCY 1 cut(s) 170
BtsCI GGATG 3 cut(s) 45, 310, 577
BtsIMutI CAGTG 1 cut(s) 254
Cac8I GCNNGC 2 cut(s) 79, 219
Cfr13I GGNCC 1 cut(s) 414
CseI GACGC 1 cut(s) 130
CviAII CATG 1 cut(s) 133
CviJI RGCY 8 cut(s) 6, 59, 233, 260, 311, 386, 401, 532
CviKI_1 RGCY 8 cut(s) 6, 59, 233, 260, 311, 386, 401, 532
DpnI GATC 2 cut(s) 172, 300
DpnII GATC 2 cut(s) 170, 298
Eam1104I CTCTTC 1 cut(s) 455
EarI CTCTTC 1 cut(s) 455
Ecl136II GAGCTC 2 cut(s) 6, 532
Eco24I GRGCYC 2 cut(s) 8, 534
Eco47I GGWCC 1 cut(s) 414
Eco53kI GAGCTC 2 cut(s) 6, 532
EcoICRI GAGCTC 2 cut(s) 6, 532
EcoRI GAATTC 2 cut(s) 314, 512
EcoT38I GRGCYC 2 cut(s) 8, 534
Esp3I CGTCTC 2 cut(s) 192, 412
FaeI CATG 1 cut(s) 136
FaiI YATR 2 cut(s) 134, 425
FaqI GGGAC 1 cut(s) 223
FatI CATG 1 cut(s) 132
Fnu4HI GCNGC 3 cut(s) 52, 486, 489
FokI GGATG 3 cut(s) 52, 317, 584
FriOI GRGCYC 2 cut(s) 8, 534
Fsp4HI GCNGC 3 cut(s) 52, 486, 489
FspBI CTAG 2 cut(s) 230, 350
GluI GCNGC 3 cut(s) 52, 486, 489
HapII CCGG 2 cut(s) 174, 302
HgaI GACGC 1 cut(s) 130
Hin1I GRCGYC 2 cut(s) 141, 610
Hin1II CATG 1 cut(s) 136
HincII GTYRAC 1 cut(s) 508
HindII GTYRAC 1 cut(s) 508
HinfI GANTC 1 cut(s) 293
HpaII CCGG 2 cut(s) 174, 302
HphI GGTGA 3 cut(s) 83, 439, 574
Hpy166II GTNNAC 1 cut(s) 508
Hpy188I TCNGA 1 cut(s) 298
Hpy188III TCNNGA 7 cut(s) 157, 174, 302, 319, 355, 517, 538
Hpy8I GTNNAC 1 cut(s) 508
Hpy99I CGWCG 1 cut(s) 338
HpyAV CCTTC 2 cut(s) 233, 520
HpyCH4III ACNGT 3 cut(s) 113, 334, 366
HpyCH4IV ACGT 1 cut(s) 610
HpyCH4V TGCA 2 cut(s) 43, 485
HpyF10VI GCNNNNNNNGC 1 cut(s) 257
HpySE526I ACGT 1 cut(s) 610
Hsp92I GRCGYC 2 cut(s) 141, 610
Hsp92II CATG 1 cut(s) 136
Kpn2I TCCGGA 2 cut(s) 173, 301
Kzo9I GATC 2 cut(s) 170, 298
LmnI GCTCC 2 cut(s) 56, 529
LpnPI CCDG 7 cut(s) 53, 63, 187, 242, 315, 396, 565
Lsp1109I GCAGC 3 cut(s) 63, 497, 500
LweI GCATC 2 cut(s) 30, 259
MaeI CTAG 2 cut(s) 230, 350
MaeII ACGT 1 cut(s) 610
MaeIII GTNAC 1 cut(s) 196
MalI GATC 2 cut(s) 172, 300
MboI GATC 2 cut(s) 170, 298
MboII GAAGA 4 cut(s) 80, 218, 365, 472
MflI RGATCY 1 cut(s) 170
MhlI GDGCHC 4 cut(s) 8, 156, 223, 534
MluCI AATT 2 cut(s) 314, 512
MluI ACGCGT 1 cut(s) 215
MlyI GAGTC 1 cut(s) 302
MroI TCCGGA 2 cut(s) 173, 301
MseI TTAA 2 cut(s) 420, 437
MslI CAYNNNNRTG 2 cut(s) 285, 422
MspA1I CMGCKG 1 cut(s) 54
MspI CCGG 2 cut(s) 174, 302
MvnI CGCG 1 cut(s) 217
MwoI GCNNNNNNNGC 1 cut(s) 257
NdeII GATC 2 cut(s) 170, 298
NlaIII CATG 1 cut(s) 136
NlaIV GGNNCC 2 cut(s) 172, 545
NmeAIII GCCGAG 1 cut(s) 316
NmuCI GTSAC 1 cut(s) 196
NspI RCATGY 1 cut(s) 136
PciI ACATGT 1 cut(s) 132
PflMI CCANNNNNTGG 1 cut(s) 389
PkrI GCNGC 3 cut(s) 53, 487, 490
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
PscI ACATGT 1 cut(s) 132
PshBI ATTAAT 1 cut(s) 420
Psp124BI GAGCTC 2 cut(s) 8, 534
PspN4I GGNNCC 2 cut(s) 172, 545
PspPI GGNCC 1 cut(s) 414
PsuI RGATCY 1 cut(s) 170
RseI CAYNNNNRTG 2 cut(s) 285, 422
SacI GAGCTC 2 cut(s) 8, 534
SaqAI TTAA 2 cut(s) 420, 437
SatI GCNGC 3 cut(s) 52, 486, 489
Sau3AI GATC 2 cut(s) 170, 298
Sau96I GGNCC 1 cut(s) 414
SchI GAGTC 1 cut(s) 302
SduI GDGCHC 4 cut(s) 8, 156, 223, 534
SetI ASST 9 cut(s) 8, 61, 235, 313, 388, 524, 534, 545, 613
SfaNI GCATC 2 cut(s) 30, 259
SinI GGWCC 1 cut(s) 414
SmiMI CAYNNNNRTG 2 cut(s) 285, 422
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 2 cut(s) 314, 512
SsiI CCGC 2 cut(s) 54, 249
SspMI CTAG 2 cut(s) 230, 350
SstI GAGCTC 2 cut(s) 8, 534
TaaI ACNGT 3 cut(s) 113, 334, 366
TaiI ACGT 1 cut(s) 613
TasI AATT 2 cut(s) 314, 512
Tru1I TTAA 2 cut(s) 420, 437
Tru9I TTAA 2 cut(s) 420, 437
TscAI CASTG 1 cut(s) 261
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 3 cut(s) 51, 485, 488
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 1 cut(s) 321
TspGWI ACGGA 2 cut(s) 174, 177
TspRI CASTG 1 cut(s) 261
Van91I CCANNNNNTGG 1 cut(s) 389
VpaK11BI GGWCC 1 cut(s) 414
VspI ATTAAT 1 cut(s) 420
XapI RAATTY 2 cut(s) 314, 512
XceI RCATGY 1 cut(s) 136
XcmI CCANNNNNNNNNTGG 1 cut(s) 390
XspI CTAG 2 cut(s) 230, 350
ZraI GACGTC 1 cut(s) 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.