RLG00000020534

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0018831
Physical Location & Seq
Reverse (-)
66037422 .. 66038264
843 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020534

Sequence Viewer

Length: 348 bp
ATGGGAATCCCTGCTGCTTCTGAGGCGGTGAAGGTGCCGGCGACGACCACGAGCTCGTCGTCAATGGCGTCGATGATCAGAGCCTACTCTCTCTCTCTCTCTCGCCAGCGATTGAGCATCATGGGAATCCCTGCTGCTTTTGAGGCGGTGAAGGTGCCGGCGACGGCCACGAGCTCGTCGTCAATGGTGTCGACGATCAGAGCCTACTCCATGCCCCTGATTCTCTTCATCGTCGCCATTGAGCTGGGGTTGGACCGGTTGGTTGTTGTTCAATTGGGCATTTTTGTTTGGTGGAGTTTGACTATAGGCATCGAAGAGTGTGTGGGATTTGAGGGGAGTTGTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.15

Weight (kDa)

5.29

Isoelectric Point (pI)

52.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018831)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g12911
pyrus_communis pycom111g03920
rosa_laevigata RLG00000020534 RLG00000023537 RLG00000028425 RLG00000035877
rosa_samantha Rh2AG244200 Rh2AG539500 Rh2DG253000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 34, 154
AccI GTMKAC 1 cut(s) 191
AciI CCGC 2 cut(s) 26, 146
AcoI YGGCCR 1 cut(s) 165
AcyI GRCGYC 1 cut(s) 68
AgeI ACCGGT 1 cut(s) 255
AgsI TTSAA 1 cut(s) 272
AluBI AGCT 3 cut(s) 54, 174, 244
AluI AGCT 3 cut(s) 54, 174, 244
Alw21I GWGCWC 2 cut(s) 56, 176
AoxI GGCC 1 cut(s) 165
ApeKI GCWGC 2 cut(s) 14, 134
AsiGI ACCGGT 1 cut(s) 255
AspS9I GGNCC 1 cut(s) 253
AsuHPI GGTGA 2 cut(s) 40, 160
AvaII GGWCC 1 cut(s) 253
BanI GGYRCC 2 cut(s) 34, 154
BanII GRGCYC 2 cut(s) 56, 176
BauI CACGAG 2 cut(s) 49, 169
Bbv12I GWGCWC 2 cut(s) 56, 176
BbvI GCAGC 1 cut(s) 121
BceAI ACGGC 1 cut(s) 180
BclI TGATCA 1 cut(s) 75
BfmI CTRYAG 1 cut(s) 303
BisI GCNGC 2 cut(s) 15, 135
BlsI GCNGC 2 cut(s) 16, 136
Bme18I GGWCC 1 cut(s) 253
BmgT120I GGNCC 1 cut(s) 253
BmiI GGNNCC 2 cut(s) 36, 156
BmsI GCATC 2 cut(s) 126, 318
BsaHI GRCGYC 1 cut(s) 68
BsaWI WCCGGW 1 cut(s) 255
Bse118I RCCGGY 3 cut(s) 37, 157, 255
BseMII CTCAG 1 cut(s) 12
BseXI GCAGC 1 cut(s) 121
BseYI CCCAGC 1 cut(s) 244
BshFI GGCC 1 cut(s) 167
BshNI GGYRCC 2 cut(s) 34, 154
BshTI ACCGGT 1 cut(s) 255
BsiHKAI GWGCWC 2 cut(s) 56, 176
BsiSI CCGG 3 cut(s) 38, 158, 256
BsnI GGCC 1 cut(s) 167
Bsp1286I GDGCHC 2 cut(s) 56, 176
Bsp143I GATC 2 cut(s) 75, 195
BspACI CCGC 2 cut(s) 26, 146
BspANI GGCC 1 cut(s) 167
BspCNI CTCAG 1 cut(s) 13
BspLI GGNNCC 2 cut(s) 36, 156
BspT107I GGYRCC 2 cut(s) 34, 154
BsrFI RCCGGY 3 cut(s) 37, 157, 255
BssAI RCCGGY 3 cut(s) 37, 157, 255
BssMI GATC 2 cut(s) 75, 195
BssNI GRCGYC 1 cut(s) 68
BssSI CACGAG 2 cut(s) 49, 169
Bst2BI CACGAG 2 cut(s) 49, 169
Bst6I CTCTTC 2 cut(s) 230, 309
BstACI GRCGYC 1 cut(s) 68
BstC8I GCNNGC 3 cut(s) 39, 107, 159
BstDEI CTNAG 1 cut(s) 21
BstKTI GATC 2 cut(s) 78, 198
BstMBI GATC 2 cut(s) 75, 195
BstMWI GCNNNNNNNGC 2 cut(s) 23, 143
BstSFI CTRYAG 1 cut(s) 303
BstV1I GCAGC 1 cut(s) 121
BstXI CCANNNNNNTGG 1 cut(s) 244
BsuRI GGCC 1 cut(s) 167
Cac8I GCNNGC 3 cut(s) 39, 107, 159
Cfr10I RCCGGY 3 cut(s) 37, 157, 255
Cfr13I GGNCC 1 cut(s) 253
CseI GACGC 1 cut(s) 57
CspAI ACCGGT 1 cut(s) 255
CviAII CATG 2 cut(s) 121, 211
CviJI RGCY 6 cut(s) 54, 83, 167, 174, 203, 244
CviKI_1 RGCY 6 cut(s) 54, 83, 167, 174, 203, 244
DdeI CTNAG 1 cut(s) 21
DpnI GATC 2 cut(s) 77, 197
DpnII GATC 2 cut(s) 75, 195
EaeI YGGCCR 1 cut(s) 165
Eam1104I CTCTTC 2 cut(s) 230, 309
EarI CTCTTC 2 cut(s) 230, 309
Ecl136II GAGCTC 2 cut(s) 54, 174
Eco24I GRGCYC 2 cut(s) 56, 176
Eco47I GGWCC 1 cut(s) 253
Eco53kI GAGCTC 2 cut(s) 54, 174
EcoICRI GAGCTC 2 cut(s) 54, 174
EcoT38I GRGCYC 2 cut(s) 56, 176
FaeI CATG 2 cut(s) 124, 214
FaiI YATR 3 cut(s) 122, 212, 305
FatI CATG 2 cut(s) 120, 210
FbaI TGATCA 1 cut(s) 75
FblI GTMKAC 1 cut(s) 191
Fnu4HI GCNGC 2 cut(s) 15, 135
FriOI GRGCYC 2 cut(s) 56, 176
Fsp4HI GCNGC 2 cut(s) 15, 135
GluI GCNGC 2 cut(s) 15, 135
GsaI CCCAGC 1 cut(s) 248
HaeIII GGCC 1 cut(s) 167
HapII CCGG 3 cut(s) 38, 158, 256
HgaI GACGC 1 cut(s) 57
Hin1I GRCGYC 1 cut(s) 68
Hin1II CATG 2 cut(s) 124, 214
HincII GTYRAC 1 cut(s) 192
HindII GTYRAC 1 cut(s) 192
HinfI GANTC 3 cut(s) 6, 126, 220
HpaII CCGG 3 cut(s) 38, 158, 256
HphI GGTGA 2 cut(s) 40, 160
Hpy166II GTNNAC 1 cut(s) 192
Hpy188I TCNGA 3 cut(s) 22, 80, 200
Hpy8I GTNNAC 1 cut(s) 192
Hpy99I CGWCG 7 cut(s) 46, 61, 73, 166, 181, 196, 236
HpyAV CCTTC 2 cut(s) 25, 145
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 143
HpyF3I CTNAG 1 cut(s) 21
Hsp92I GRCGYC 1 cut(s) 68
Hsp92II CATG 2 cut(s) 124, 214
KroI GCCGGC 2 cut(s) 37, 157
KroNI GCCGGC 2 cut(s) 39, 159
Ksp22I TGATCA 1 cut(s) 75
Kzo9I GATC 2 cut(s) 75, 195
LpnPI CCDG 8 cut(s) 24, 51, 119, 144, 171, 230, 230, 269
Lsp1109I GCAGC 1 cut(s) 121
LweI GCATC 2 cut(s) 126, 318
MalI GATC 2 cut(s) 77, 197
MboI GATC 2 cut(s) 75, 195
MboII GAAGA 2 cut(s) 217, 326
MfeI CAATTG 1 cut(s) 272
MhlI GDGCHC 2 cut(s) 56, 176
MluCI AATT 1 cut(s) 272
MmeI TCCRAC 1 cut(s) 231
MnlI CCTC 3 cut(s) 16, 136, 325
MroNI GCCGGC 2 cut(s) 37, 157
MseI TTAA 1 cut(s) 346
MspI CCGG 3 cut(s) 38, 158, 256
MunI CAATTG 1 cut(s) 272
MwoI GCNNNNNNNGC 2 cut(s) 23, 143
NaeI GCCGGC 2 cut(s) 39, 159
NdeII GATC 2 cut(s) 75, 195
NgoMIV GCCGGC 2 cut(s) 37, 157
NlaIII CATG 2 cut(s) 124, 214
NlaIV GGNNCC 2 cut(s) 36, 156
PcsI WCGNNNNNNNCGW 3 cut(s) 56, 65, 176
PdiI GCCGGC 2 cut(s) 39, 159
PfeI GAWTC 3 cut(s) 6, 126, 220
PinAI ACCGGT 1 cut(s) 255
PkrI GCNGC 2 cut(s) 16, 136
Psp124BI GAGCTC 2 cut(s) 56, 176
PspFI CCCAGC 1 cut(s) 244
PspN4I GGNNCC 2 cut(s) 36, 156
PspPI GGNCC 1 cut(s) 253
SacI GAGCTC 2 cut(s) 56, 176
SalI GTCGAC 1 cut(s) 190
SaqAI TTAA 1 cut(s) 346
SatI GCNGC 2 cut(s) 15, 135
Sau3AI GATC 2 cut(s) 75, 195
Sau96I GGNCC 1 cut(s) 253
SduI GDGCHC 2 cut(s) 56, 176
SetI ASST 5 cut(s) 36, 56, 156, 176, 246
SfaNI GCATC 2 cut(s) 126, 318
SfcI CTRYAG 1 cut(s) 303
SinI GGWCC 1 cut(s) 253
Sse9I AATT 1 cut(s) 272
SsiI CCGC 2 cut(s) 26, 146
SstI GAGCTC 2 cut(s) 56, 176
TaqI TCGA 3 cut(s) 71, 191, 312
TasI AATT 1 cut(s) 272
TfiI GAWTC 3 cut(s) 6, 126, 220
Tru1I TTAA 1 cut(s) 346
Tru9I TTAA 1 cut(s) 346
TseI GCWGC 2 cut(s) 14, 134
TspDTI ATGAA 1 cut(s) 217
VpaK11BI GGWCC 1 cut(s) 253
XmiI GTMKAC 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.