Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0018831

Physical Location & Seq

Genomic Coordinates Forward (+)

22677471 .. 22679223

Gene Structure 1753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028425

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCACGACGCAGTGCTGGTCTGGTTCTCATTGCCTTTTGCCTTTTTCCCAGCATGGTTTTGGGGTTTACAGAATTTGTCGTTGGAGGTAATGACGGCTGGAAAGCTGGAGTAGTTGATTACTCTGCTTGGGCTTCTAGCTATACCTTTAGTGCTGGAGATGTTTTAGTTTTCAATTATTGGGACACAACTGAATATAATCTGGGCTCCGCCTGGTCAAGGCACTGCTCTGTTCTCGTAGACTCCGCCATCCACGTCATGGTCCTTACCAAGCTCGCCGCGCTCTACTTCTTCGGCGGCGCCGGCAACCAATGGCTCAAATTCTCTTCCAATCTTTCATCTAAGCGGCGCAACACAATCCTGGTGGCCGACTCGGTCTCGCACTCTGCGAGGTTGGCTAGTTGTGGAGGAGCCAGTGGAAGCTGTTCTGGGTTTCCGGCGGCGATACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_2

Protein Analysis

151

Amino Acids

15.97

Weight (kDa)

8.41

Isoelectric Point (pI)

44.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018831)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12911
pyrus_communis	pycom111g03920
rosa_laevigata	RLG00000020534 RLG00000023537 RLG00000028425 RLG00000035877
rosa_samantha	Rh2AG244200 Rh2AG539500 Rh2DG253000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	299
AccB7I	CCANNNNNTGG	1 cut(s)	259
AccI	GTMKAC	1 cut(s)	240
AccII	CGCG	1 cut(s)	281
AciI	CCGC	6 cut(s)	210, 246, 279, 297, 346, 440
AcoI	YGGCCR	1 cut(s)	366
AcsI	RAATTY	2 cut(s)	74, 320
AcyI	GRCGYC	1 cut(s)	300
AfiI	CCNNNNNNNGG	2 cut(s)	219, 259
AgsI	TTSAA	1 cut(s)	175
AjiI	CACGTC	1 cut(s)	256
AjnI	CCWGG	2 cut(s)	212, 360
AjuI	GAANNNNNNNTTGG	2 cut(s)	66, 98
AluBI	AGCT	4 cut(s)	107, 141, 274, 423
AluI	AGCT	4 cut(s)	107, 141, 274, 423
Alw26I	GTCTC	1 cut(s)	382
AoxI	GGCC	1 cut(s)	366
ApoI	RAATTY	2 cut(s)	74, 320
Asp700I	GAANNNNTTC	1 cut(s)	424
AspLEI	GCGC	3 cut(s)	283, 302, 351
AspS9I	GGNCC	1 cut(s)	262
AvaII	GGWCC	1 cut(s)	262
BanI	GGYRCC	1 cut(s)	299
BanII	GRGCYC	1 cut(s)	209
BccI	CCATC	1 cut(s)	257
BceAI	ACGGC	1 cut(s)	112
BciT130I	CCWGG	2 cut(s)	214, 362
BcoDI	GTCTC	1 cut(s)	382
BfaI	CTAG	2 cut(s)	138, 399
BfoI	RGCGCY	1 cut(s)	303
BisI	GCNGC	4 cut(s)	279, 298, 347, 441
BlsI	GCNGC	4 cut(s)	280, 299, 348, 442
Bme1390I	CCNGG	2 cut(s)	214, 362
Bme18I	GGWCC	1 cut(s)	262
BmgBI	CACGTC	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	262
BmiI	GGNNCC	3 cut(s)	208, 301, 412
BmrFI	CCNGG	2 cut(s)	214, 362
BpmI	CTGGAG	2 cut(s)	129, 177
BsaHI	GRCGYC	1 cut(s)	300
BsaI	GGTCTC	1 cut(s)	382
Bsc4I	CCNNNNNNNGG	2 cut(s)	219, 259
Bse118I	RCCGGY	1 cut(s)	302
Bse1I	ACTGG	1 cut(s)	414
Bse3DI	GCAATG	1 cut(s)	30
BseBI	CCWGG	2 cut(s)	214, 362
BseGI	GGATG	1 cut(s)	249
BseLI	CCNNNNNNNGG	2 cut(s)	219, 259
BseMI	GCAATG	1 cut(s)	30
BseNI	ACTGG	1 cut(s)	414
BseRI	GAGGAG	1 cut(s)	423
BseYI	CCCAGC	1 cut(s)	50
Bsh1236I	CGCG	1 cut(s)	281
BshFI	GGCC	1 cut(s)	368
BshNI	GGYRCC	1 cut(s)	299
BsiSI	CCGG	2 cut(s)	303, 437
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	2 cut(s)	219, 259
BsmAI	GTCTC	1 cut(s)	382
BsmFI	GGGAC	1 cut(s)	197
BsnI	GGCC	1 cut(s)	368
Bso31I	GGTCTC	1 cut(s)	382
Bsp1286I	GDGCHC	1 cut(s)	209
BspACI	CCGC	6 cut(s)	210, 246, 279, 297, 346, 440
BspANI	GGCC	1 cut(s)	368
BspFNI	CGCG	1 cut(s)	281
BspLI	GGNNCC	3 cut(s)	208, 301, 412
BspT107I	GGYRCC	1 cut(s)	299
BspTNI	GGTCTC	1 cut(s)	382
BsrDI	GCAATG	1 cut(s)	30
BsrFI	RCCGGY	1 cut(s)	302
BsrI	ACTGG	1 cut(s)	414
BssAI	RCCGGY	1 cut(s)	302
BssNI	GRCGYC	1 cut(s)	300
Bst2UI	CCWGG	2 cut(s)	214, 362
Bst6I	CTCTTC	1 cut(s)	331
BstACI	GRCGYC	1 cut(s)	300
BstC8I	GCNNGC	2 cut(s)	276, 304
BstDEI	CTNAG	1 cut(s)	342
BstENI	CCTNNNNNAGG	1 cut(s)	217
BstF5I	GGATG	1 cut(s)	249
BstFNI	CGCG	1 cut(s)	281
BstH2I	RGCGCY	1 cut(s)	303
BstHHI	GCGC	3 cut(s)	283, 302, 351
BstMAI	GTCTC	1 cut(s)	382
BstMWI	GCNNNNNNNGC	3 cut(s)	280, 303, 395
BstNI	CCWGG	2 cut(s)	214, 362
BstSCI	CCNGG	2 cut(s)	212, 360
BstUI	CGCG	1 cut(s)	281
BsuRI	GGCC	1 cut(s)	368
BtrI	CACGTC	1 cut(s)	256
BtsCI	GGATG	1 cut(s)	249
BtsI	GCAGTG	2 cut(s)	19, 223
BtsIMutI	CAGTG	3 cut(s)	19, 223, 421
Cac8I	GCNNGC	2 cut(s)	276, 304
CfoI	GCGC	3 cut(s)	283, 302, 351
Cfr10I	RCCGGY	1 cut(s)	302
Cfr13I	GGNCC	1 cut(s)	262
CseI	GACGC	1 cut(s)	18
CspCI	CAANNNNNGTGG	2 cut(s)	345, 380
CviAII	CATG	2 cut(s)	55, 259
DdeI	CTNAG	1 cut(s)	342
DinI	GGCGCC	1 cut(s)	301
EaeI	YGGCCR	1 cut(s)	366
Eam1104I	CTCTTC	1 cut(s)	331
EarI	CTCTTC	1 cut(s)	331
EciI	GGCGGA	2 cut(s)	199, 235
Eco24I	GRGCYC	1 cut(s)	209
Eco31I	GGTCTC	1 cut(s)	382
Eco47I	GGWCC	1 cut(s)	262
EcoNI	CCTNNNNNAGG	1 cut(s)	217
EcoRII	CCWGG	2 cut(s)	212, 360
EcoT38I	GRGCYC	1 cut(s)	209
EgeI	GGCGCC	1 cut(s)	301
EheI	GGCGCC	1 cut(s)	301
FaeI	CATG	2 cut(s)	58, 262
FaiI	YATR	4 cut(s)	56, 144, 198, 260
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	2 cut(s)	54, 258
FblI	GTMKAC	1 cut(s)	240
Fnu4HI	GCNGC	4 cut(s)	279, 298, 347, 441
FokI	GGATG	1 cut(s)	236
FriOI	GRGCYC	1 cut(s)	209
Fsp4HI	GCNGC	4 cut(s)	279, 298, 347, 441
FspBI	CTAG	2 cut(s)	138, 399
GlaI	GCGC	3 cut(s)	282, 301, 350
GluI	GCNGC	4 cut(s)	279, 298, 347, 441
GsaI	CCCAGC	1 cut(s)	54
GsuI	CTGGAG	2 cut(s)	129, 177
HaeII	RGCGCY	1 cut(s)	303
HaeIII	GGCC	1 cut(s)	368
HapII	CCGG	2 cut(s)	303, 437
HgaI	GACGC	1 cut(s)	18
HhaI	GCGC	3 cut(s)	283, 302, 351
Hin1I	GRCGYC	1 cut(s)	300
Hin1II	CATG	2 cut(s)	58, 262
Hin6I	GCGC	3 cut(s)	281, 300, 349
HinP1I	GCGC	3 cut(s)	281, 300, 349
HinfI	GANTC	2 cut(s)	242, 371
HpaII	CCGG	2 cut(s)	303, 437
Hpy166II	GTNNAC	2 cut(s)	69, 241
Hpy8I	GTNNAC	2 cut(s)	69, 241
Hpy99I	CGWCG	1 cut(s)	12
HpyCH4IV	ACGT	1 cut(s)	255
HpyF10VI	GCNNNNNNNGC	3 cut(s)	280, 303, 395
HpyF3I	CTNAG	1 cut(s)	342
HpySE526I	ACGT	1 cut(s)	255
Hsp92I	GRCGYC	1 cut(s)	300
Hsp92II	CATG	2 cut(s)	58, 262
HspAI	GCGC	3 cut(s)	281, 300, 349
KasI	GGCGCC	1 cut(s)	299
KroI	GCCGGC	1 cut(s)	302
KroNI	GCCGGC	1 cut(s)	304
LmnI	GCTCC	2 cut(s)	212, 410
MaeI	CTAG	2 cut(s)	138, 399
MaeII	ACGT	1 cut(s)	255
MboII	GAAGA	2 cut(s)	283, 318
MhlI	GDGCHC	1 cut(s)	209
MluCI	AATT	3 cut(s)	74, 175, 320
Mly113I	GGCGCC	1 cut(s)	300
MlyI	GAGTC	2 cut(s)	236, 365
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	3 cut(s)	80, 384, 401
MroNI	GCCGGC	1 cut(s)	302
MroXI	GAANNNNTTC	1 cut(s)	424
MspI	CCGG	2 cut(s)	303, 437
MspR9I	CCNGG	2 cut(s)	214, 362
MvaI	CCWGG	2 cut(s)	214, 362
MvnI	CGCG	1 cut(s)	281
MwoI	GCNNNNNNNGC	3 cut(s)	280, 303, 395
NaeI	GCCGGC	1 cut(s)	304
NarI	GGCGCC	1 cut(s)	300
NgoMIV	GCCGGC	1 cut(s)	302
NlaIII	CATG	2 cut(s)	58, 262
NlaIV	GGNNCC	3 cut(s)	208, 301, 412
PcsI	WCGNNNNNNNCGW	1 cut(s)	386
PdiI	GCCGGC	1 cut(s)	304
PdmI	GAANNNNTTC	1 cut(s)	424
PflFI	GACNNNGTC	1 cut(s)	374
PflMI	CCANNNNNTGG	1 cut(s)	259
PkrI	GCNGC	4 cut(s)	280, 299, 348, 442
PleI	GAGTC	2 cut(s)	236, 365
PluTI	GGCGCC	1 cut(s)	303
PpsI	GAGTC	2 cut(s)	236, 365
Psp6I	CCWGG	2 cut(s)	212, 360
PspFI	CCCAGC	1 cut(s)	50
PspGI	CCWGG	2 cut(s)	212, 360
PspN4I	GGNNCC	3 cut(s)	208, 301, 412
PspPI	GGNCC	1 cut(s)	262
PsyI	GACNNNGTC	1 cut(s)	374
SatI	GCNGC	4 cut(s)	279, 298, 347, 441
Sau96I	GGNCC	1 cut(s)	262
SchI	GAGTC	2 cut(s)	236, 365
ScrFI	CCNGG	2 cut(s)	214, 362
SduI	GDGCHC	1 cut(s)	209
SetI	ASST	8 cut(s)	91, 109, 143, 149, 258, 276, 395, 425
SfoI	GGCGCC	1 cut(s)	301
SinI	GGWCC	1 cut(s)	262
Sse9I	AATT	3 cut(s)	74, 175, 320
SsiI	CCGC	6 cut(s)	210, 246, 279, 297, 346, 440
SspDI	GGCGCC	1 cut(s)	299
SspMI	CTAG	2 cut(s)	138, 399
StyD4I	CCNGG	2 cut(s)	212, 360
TaiI	ACGT	1 cut(s)	258
TaqII	GACCGA	1 cut(s)	364
TasI	AATT	3 cut(s)	74, 175, 320
TauI	GCSGC	4 cut(s)	281, 300, 349, 443
TscAI	CASTG	3 cut(s)	19, 230, 421
TspDTI	ATGAA	1 cut(s)	327
TspRI	CASTG	3 cut(s)	19, 230, 421
Tth111I	GACNNNGTC	1 cut(s)	374
Van91I	CCANNNNNTGG	1 cut(s)	259
VpaK11BI	GGWCC	1 cut(s)	262
XagI	CCTNNNNNAGG	1 cut(s)	217
XapI	RAATTY	2 cut(s)	74, 320
XcmI	CCANNNNNNNNNTGG	2 cut(s)	58, 256
XmiI	GTMKAC	1 cut(s)	240
XmnI	GAANNNNTTC	1 cut(s)	424
XspI	CTAG	2 cut(s)	138, 399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.