Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0018831

Physical Location & Seq

Genomic Coordinates Reverse (-)

25042924 .. 25045102

Gene Structure 2179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023537

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGCAATCCCTGCTGCTTCTGCAGCGTCGAAGGTGTCAGCGACGGCGACGAGCTCGTCGTCAATGGTGTCAACGATCAGAGCCTACTCCATGCCCCTGATTCTCTTCATCGTGGCCATGCACGGCTCCGTCCTCGTTGACTCTGCCACCCGCATCATGGTCTTCACTGAGCTCGTCGCGCTCTACTTCTTTGACGGCGCTGGCAACCACTGGCTCAAATTCTCTTCCAATCTTCCGTCCAAGCCCCGCAGCTCGATCCTGGTGGCCGACTCAGTCTTCGTGCTCTACAAGGTCAACTCACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_2

Protein Analysis

102

Amino Acids

10.76

Weight (kDa)

9.6

Isoelectric Point (pI)

42.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018831)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12911
pyrus_communis	pycom111g03920
rosa_laevigata	RLG00000020534 RLG00000023537 RLG00000028425 RLG00000035877
rosa_samantha	Rh2AG244200 Rh2AG539500 Rh2DG253000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	55
AccII	CGCG	1 cut(s)	179
AciI	CCGC	2 cut(s)	151, 247
AclWI	GGATC	1 cut(s)	250
AcoI	YGGCCR	2 cut(s)	114, 264
AcsI	RAATTY	1 cut(s)	218
AfiI	CCNNNNNNNGG	1 cut(s)	157
AjnI	CCWGG	1 cut(s)	258
AluBI	AGCT	3 cut(s)	54, 172, 252
AluI	AGCT	3 cut(s)	54, 172, 252
Alw21I	GWGCWC	3 cut(s)	56, 174, 285
AlwI	GGATC	1 cut(s)	250
AoxI	GGCC	2 cut(s)	114, 264
ApeKI	GCWGC	3 cut(s)	14, 23, 249
ApoI	RAATTY	1 cut(s)	218
ArsI	GACNNNNNNTTYG	2 cut(s)	260, 292
AspLEI	GCGC	2 cut(s)	181, 200
BalI	TGGCCA	1 cut(s)	116
BanII	GRGCYC	2 cut(s)	56, 174
BbsI	GAAGAC	2 cut(s)	154, 268
Bbv12I	GWGCWC	3 cut(s)	56, 174, 285
BbvI	GCAGC	2 cut(s)	35, 261
BceAI	ACGGC	3 cut(s)	60, 139, 211
BciT130I	CCWGG	1 cut(s)	260
BfmI	CTRYAG	1 cut(s)	21
BfoI	RGCGCY	1 cut(s)	201
BisI	GCNGC	3 cut(s)	15, 24, 250
BlsI	GCNGC	3 cut(s)	16, 25, 251
Bme1390I	CCNGG	1 cut(s)	260
BmiI	GGNNCC	1 cut(s)	127
BmrFI	CCNGG	1 cut(s)	260
BmsI	GCATC	1 cut(s)	162
BpiI	GAAGAC	2 cut(s)	154, 268
Bsc4I	CCNNNNNNNGG	1 cut(s)	157
Bse1I	ACTGG	1 cut(s)	215
BseBI	CCWGG	1 cut(s)	260
BseLI	CCNNNNNNNGG	1 cut(s)	157
BseMII	CTCAG	2 cut(s)	159, 285
BseNI	ACTGG	1 cut(s)	215
BseXI	GCAGC	2 cut(s)	35, 261
Bsh1236I	CGCG	1 cut(s)	179
BshFI	GGCC	2 cut(s)	116, 266
BsiHKAI	GWGCWC	3 cut(s)	56, 174, 285
BslI	CCNNNNNNNGG	1 cut(s)	157
BsnI	GGCC	2 cut(s)	116, 266
Bsp1286I	GDGCHC	3 cut(s)	56, 174, 285
Bsp143I	GATC	2 cut(s)	75, 255
BspACI	CCGC	2 cut(s)	151, 247
BspANI	GGCC	2 cut(s)	116, 266
BspCNI	CTCAG	2 cut(s)	160, 284
BspFNI	CGCG	1 cut(s)	179
BspLI	GGNNCC	1 cut(s)	127
BspMAI	CTGCAG	1 cut(s)	25
BspPI	GGATC	1 cut(s)	250
BsrI	ACTGG	1 cut(s)	215
BssMI	GATC	2 cut(s)	75, 255
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	1 cut(s)	303
Bst6I	CTCTTC	2 cut(s)	110, 229
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	2 cut(s)	168, 271
BstFNI	CGCG	1 cut(s)	179
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	2 cut(s)	181, 200
BstKTI	GATC	2 cut(s)	78, 258
BstMBI	GATC	2 cut(s)	75, 255
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 20, 23, 178
BstNI	CCWGG	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	258
BstSFI	CTRYAG	1 cut(s)	21
BstUI	CGCG	1 cut(s)	179
BstV1I	GCAGC	2 cut(s)	35, 261
BstV2I	GAAGAC	2 cut(s)	154, 268
BsuRI	GGCC	2 cut(s)	116, 266
BtsIMutI	CAGTG	3 cut(s)	165, 208, 299
Cac8I	GCNNGC	1 cut(s)	202
CfoI	GCGC	2 cut(s)	181, 200
CseI	GACGC	1 cut(s)	15
CviAII	CATG	3 cut(s)	91, 118, 157
CviJI	RGCY	9 cut(s)	54, 83, 116, 126, 172, 214, 244, 252, 266
CviKI_1	RGCY	9 cut(s)	54, 83, 116, 126, 172, 214, 244, 252, 266
DdeI	CTNAG	2 cut(s)	168, 271
DpnI	GATC	2 cut(s)	77, 257
DpnII	GATC	2 cut(s)	75, 255
DrdI	GACNNNNNNGTC	1 cut(s)	55
DseDI	GACNNNNNNGTC	1 cut(s)	55
EaeI	YGGCCR	2 cut(s)	114, 264
Eam1104I	CTCTTC	2 cut(s)	110, 229
EarI	CTCTTC	2 cut(s)	110, 229
Ecl136II	GAGCTC	2 cut(s)	54, 172
Eco24I	GRGCYC	2 cut(s)	56, 174
Eco53kI	GAGCTC	2 cut(s)	54, 172
EcoICRI	GAGCTC	2 cut(s)	54, 172
EcoRII	CCWGG	1 cut(s)	258
EcoT38I	GRGCYC	2 cut(s)	56, 174
FaeI	CATG	3 cut(s)	94, 121, 160
FaiI	YATR	3 cut(s)	92, 119, 158
FatI	CATG	3 cut(s)	90, 117, 156
FauI	CCCGC	2 cut(s)	158, 254
Fnu4HI	GCNGC	3 cut(s)	15, 24, 250
FriOI	GRGCYC	2 cut(s)	56, 174
Fsp4HI	GCNGC	3 cut(s)	15, 24, 250
GlaI	GCGC	2 cut(s)	180, 199
GluI	GCNGC	3 cut(s)	15, 24, 250
HaeII	RGCGCY	1 cut(s)	201
HaeIII	GGCC	2 cut(s)	116, 266
HgaI	GACGC	1 cut(s)	15
HhaI	GCGC	2 cut(s)	181, 200
Hin1II	CATG	3 cut(s)	94, 121, 160
Hin6I	GCGC	2 cut(s)	179, 198
HinP1I	GCGC	2 cut(s)	179, 198
HincII	GTYRAC	3 cut(s)	72, 139, 295
HindII	GTYRAC	3 cut(s)	72, 139, 295
HinfI	GANTC	3 cut(s)	100, 140, 269
Hpy166II	GTNNAC	3 cut(s)	72, 139, 295
Hpy188I	TCNGA	1 cut(s)	80
Hpy8I	GTNNAC	3 cut(s)	72, 139, 295
Hpy99I	CGWCG	5 cut(s)	31, 46, 52, 61, 179
HpyAV	CCTTC	1 cut(s)	25
HpyCH4III	ACNGT	1 cut(s)	303
HpyCH4V	TGCA	2 cut(s)	23, 121
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 20, 23, 178
HpyF3I	CTNAG	2 cut(s)	168, 271
Hsp92II	CATG	3 cut(s)	94, 121, 160
HspAI	GCGC	2 cut(s)	179, 198
Kzo9I	GATC	2 cut(s)	75, 255
LmnI	GCTCC	1 cut(s)	131
LpnPI	CCDG	6 cut(s)	24, 110, 186, 196, 245, 272
Lsp1109I	GCAGC	2 cut(s)	35, 261
LweI	GCATC	1 cut(s)	162
MalI	GATC	2 cut(s)	77, 257
MboI	GATC	2 cut(s)	75, 255
MboII	GAAGA	5 cut(s)	97, 154, 216, 224, 268
MhlI	GDGCHC	3 cut(s)	56, 174, 285
MlsI	TGGCCA	1 cut(s)	116
MluCI	AATT	1 cut(s)	218
MluNI	TGGCCA	1 cut(s)	116
MlyI	GAGTC	2 cut(s)	134, 263
MnlI	CCTC	1 cut(s)	143
Mox20I	TGGCCA	1 cut(s)	116
MscI	TGGCCA	1 cut(s)	116
Msp20I	TGGCCA	1 cut(s)	116
MspR9I	CCNGG	1 cut(s)	260
MvaI	CCWGG	1 cut(s)	260
MvnI	CGCG	1 cut(s)	179
MwoI	GCNNNNNNNGC	4 cut(s)	11, 20, 23, 178
NdeII	GATC	2 cut(s)	75, 255
NlaIII	CATG	3 cut(s)	94, 121, 160
NlaIV	GGNNCC	1 cut(s)	127
PcsI	WCGNNNNNNNCGW	1 cut(s)	56
PfeI	GAWTC	1 cut(s)	100
PflFI	GACNNNGTC	1 cut(s)	272
PkrI	GCNGC	3 cut(s)	16, 25, 251
PleI	GAGTC	2 cut(s)	134, 263
PpsI	GAGTC	2 cut(s)	134, 263
Psp124BI	GAGCTC	2 cut(s)	56, 174
Psp6I	CCWGG	1 cut(s)	258
PspGI	CCWGG	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	127
PstI	CTGCAG	1 cut(s)	25
PsyI	GACNNNGTC	1 cut(s)	272
SacI	GAGCTC	2 cut(s)	56, 174
SatI	GCNGC	3 cut(s)	15, 24, 250
Sau3AI	GATC	2 cut(s)	75, 255
SchI	GAGTC	2 cut(s)	134, 263
ScrFI	CCNGG	1 cut(s)	260
SduI	GDGCHC	3 cut(s)	56, 174, 285
SetI	ASST	5 cut(s)	36, 56, 174, 254, 294
SfaNI	GCATC	1 cut(s)	162
SfcI	CTRYAG	1 cut(s)	21
Sse9I	AATT	1 cut(s)	218
SsiI	CCGC	2 cut(s)	151, 247
SstI	GAGCTC	2 cut(s)	56, 174
StyD4I	CCNGG	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	303
TaqI	TCGA	2 cut(s)	29, 254
TasI	AATT	1 cut(s)	218
TfiI	GAWTC	1 cut(s)	100
TscAI	CASTG	3 cut(s)	172, 215, 306
TseI	GCWGC	3 cut(s)	14, 23, 249
TspDTI	ATGAA	1 cut(s)	97
TspGWI	ACGGA	2 cut(s)	118, 225
TspRI	CASTG	3 cut(s)	172, 215, 306
Tth111I	GACNNNGTC	1 cut(s)	272
XapI	RAATTY	1 cut(s)	218
XcmI	CCANNNNNNNNNTGG	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.