Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0018831

Physical Location & Seq

Genomic Coordinates Forward (+)

73012002 .. 73012468

Gene Structure 467 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035877

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGCGCCACTTCTGTCCCTTGCCTCAACTTGGCTCCGCCTGGTCAAGGTACGGCTCTGTCCTTGTTGGCTCCACCACTTGCGTCATGGTCCTCGCCGAGCTCGCAATGCTCTACTTCTCTGGCAACGCTGGCAACCAATGGCTCAAATTCTCTTCCAGTCTTTCATCCAAGCCCCGCAACCCGATCCTGCACAGAAAACACTGTTTGAGCCAGTACCCTACTGAGAGGATCAGGAACTTCTCCATTATCGCCCATGTTGATCACGGCAAGTCTCCTCTGGCTGATAGGCTCTTGGAGCTCACTGGGACCATTAAGAGAGGCCATGGTCAGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_2

Protein Analysis

112

Amino Acids

12.37

Weight (kDa)

10.04

Isoelectric Point (pI)

23.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP_EFTU	PF00009	75 - 107	6.8e-09	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018831)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12911
pyrus_communis	pycom111g03920
rosa_laevigata	RLG00000020534 RLG00000023537 RLG00000028425 RLG00000035877
rosa_samantha	Rh2AG244200 Rh2AG539500 Rh2DG253000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	36, 175
AclWI	GGATC	2 cut(s)	178, 236
AcsI	RAATTY	1 cut(s)	146
AfaI	GTAC	2 cut(s)	50, 215
AfiI	CCNNNNNNNGG	2 cut(s)	29, 45
AjnI	CCWGG	1 cut(s)	38
AluBI	AGCT	2 cut(s)	100, 298
AluI	AGCT	2 cut(s)	100, 298
Alw21I	GWGCWC	2 cut(s)	102, 300
Alw26I	GTCTC	1 cut(s)	276
AlwI	GGATC	2 cut(s)	178, 236
AoxI	GGCC	1 cut(s)	319
ApoI	RAATTY	1 cut(s)	146
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	2 cut(s)	88, 306
AvaII	GGWCC	2 cut(s)	88, 306
BanII	GRGCYC	2 cut(s)	102, 300
Bbv12I	GWGCWC	2 cut(s)	102, 300
BceAI	ACGGC	2 cut(s)	67, 280
BciT130I	CCWGG	1 cut(s)	40
BclI	TGATCA	1 cut(s)	259
BcoDI	GTCTC	1 cut(s)	276
Bme1390I	CCNGG	1 cut(s)	40
Bme18I	GGWCC	2 cut(s)	88, 306
BmgT120I	GGNCC	2 cut(s)	88, 306
BmiI	GGNNCC	3 cut(s)	34, 70, 307
BmrFI	CCNGG	1 cut(s)	40
BmrI	ACTGGG	1 cut(s)	312
BmuI	ACTGGG	1 cut(s)	312
BsaJI	CCNNGG	1 cut(s)	322
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 45
Bse1I	ACTGG	3 cut(s)	156, 211, 307
Bse3DI	GCAATG	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	40
BseDI	CCNNGG	1 cut(s)	322
BseGI	GGATG	1 cut(s)	164
BseLI	CCNNNNNNNGG	2 cut(s)	29, 45
BseMI	GCAATG	1 cut(s)	111
BseMII	CTCAG	1 cut(s)	213
BseNI	ACTGG	3 cut(s)	156, 211, 307
BseRI	GAGGAG	1 cut(s)	264
BsgI	GTGCAG	1 cut(s)	173
BshFI	GGCC	1 cut(s)	321
BsiHKAI	GWGCWC	2 cut(s)	102, 300
BslFI	GGGAC	1 cut(s)	319
BslI	CCNNNNNNNGG	2 cut(s)	29, 45
BsmAI	GTCTC	1 cut(s)	276
BsmFI	GGGAC	1 cut(s)	319
BsnI	GGCC	1 cut(s)	321
Bsp1286I	GDGCHC	2 cut(s)	102, 300
Bsp143I	GATC	3 cut(s)	183, 228, 259
Bsp19I	CCATGG	1 cut(s)	322
BspACI	CCGC	2 cut(s)	36, 175
BspANI	GGCC	1 cut(s)	321
BspCNI	CTCAG	1 cut(s)	214
BspLI	GGNNCC	3 cut(s)	34, 70, 307
BspPI	GGATC	2 cut(s)	178, 236
BsrDI	GCAATG	1 cut(s)	111
BsrI	ACTGG	3 cut(s)	156, 211, 307
BssECI	CCNNGG	1 cut(s)	322
BssMI	GATC	3 cut(s)	183, 228, 259
BssT1I	CCWWGG	1 cut(s)	322
Bst2UI	CCWGG	1 cut(s)	40
Bst4CI	ACNGT	1 cut(s)	203
Bst6I	CTCTTC	1 cut(s)	157
BstC8I	GCNNGC	2 cut(s)	102, 130
BstDEI	CTNAG	2 cut(s)	222, 333
BstDSI	CCRYGG	1 cut(s)	322
BstENI	CCTNNNNNAGG	1 cut(s)	43
BstF5I	GGATG	1 cut(s)	164
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	3 cut(s)	186, 231, 262
BstMAI	GTCTC	1 cut(s)	276
BstMBI	GATC	3 cut(s)	183, 228, 259
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 106, 129, 295
BstNI	CCWGG	1 cut(s)	40
BstSCI	CCNGG	1 cut(s)	38
BsuRI	GGCC	1 cut(s)	321
BtgI	CCRYGG	1 cut(s)	322
BtsCI	GGATG	1 cut(s)	164
BtsIMutI	CAGTG	2 cut(s)	199, 300
Cac8I	GCNNGC	2 cut(s)	102, 130
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	2 cut(s)	88, 306
CseI	GACGC	1 cut(s)	70
Csp6I	GTAC	2 cut(s)	49, 214
CviAII	CATG	3 cut(s)	85, 254, 323
CviQI	GTAC	2 cut(s)	49, 214
DdeI	CTNAG	2 cut(s)	222, 333
DpnI	GATC	3 cut(s)	185, 230, 261
DpnII	GATC	3 cut(s)	183, 228, 259
Eam1104I	CTCTTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	157
EciI	GGCGGA	1 cut(s)	25
Ecl136II	GAGCTC	2 cut(s)	100, 298
Eco130I	CCWWGG	1 cut(s)	322
Eco24I	GRGCYC	2 cut(s)	102, 300
Eco47I	GGWCC	2 cut(s)	88, 306
Eco53kI	GAGCTC	2 cut(s)	100, 298
EcoICRI	GAGCTC	2 cut(s)	100, 298
EcoNI	CCTNNNNNAGG	1 cut(s)	43
EcoRII	CCWGG	1 cut(s)	38
EcoT14I	CCWWGG	1 cut(s)	322
EcoT38I	GRGCYC	2 cut(s)	102, 300
ErhI	CCWWGG	1 cut(s)	322
FaeI	CATG	3 cut(s)	88, 257, 326
FaiI	YATR	3 cut(s)	86, 255, 324
FaqI	GGGAC	1 cut(s)	319
FatI	CATG	3 cut(s)	84, 253, 322
FauI	CCCGC	1 cut(s)	182
FbaI	TGATCA	1 cut(s)	259
FokI	GGATG	1 cut(s)	151
FriOI	GRGCYC	2 cut(s)	102, 300
GlaI	GCGC	1 cut(s)	5
HaeIII	GGCC	1 cut(s)	321
HgaI	GACGC	1 cut(s)	70
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	3 cut(s)	88, 257, 326
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
Hpy188III	TCNNGA	1 cut(s)	232
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4V	TGCA	1 cut(s)	190
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 106, 129, 295
HpyF3I	CTNAG	2 cut(s)	222, 333
Hsp92II	CATG	3 cut(s)	88, 257, 326
HspAI	GCGC	1 cut(s)	4
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	3 cut(s)	183, 228, 259
LmnI	GCTCC	3 cut(s)	38, 74, 295
MalI	GATC	3 cut(s)	185, 230, 261
MboI	GATC	3 cut(s)	183, 228, 259
MboII	GAAGA	1 cut(s)	144
MhlI	GDGCHC	2 cut(s)	102, 300
MluCI	AATT	1 cut(s)	146
MnlI	CCTC	5 cut(s)	33, 101, 219, 285, 311
MseI	TTAA	1 cut(s)	312
MspR9I	CCNGG	1 cut(s)	40
MvaI	CCWGG	1 cut(s)	40
MwoI	GCNNNNNNNGC	4 cut(s)	101, 106, 129, 295
NcoI	CCATGG	1 cut(s)	322
NdeII	GATC	3 cut(s)	183, 228, 259
NlaIII	CATG	3 cut(s)	88, 257, 326
NlaIV	GGNNCC	3 cut(s)	34, 70, 307
NmeAIII	GCCGAG	1 cut(s)	121
Psp124BI	GAGCTC	2 cut(s)	102, 300
Psp6I	CCWGG	1 cut(s)	38
PspGI	CCWGG	1 cut(s)	38
PspN4I	GGNNCC	3 cut(s)	34, 70, 307
PspPI	GGNCC	2 cut(s)	88, 306
RsaI	GTAC	2 cut(s)	50, 215
RsaNI	GTAC	2 cut(s)	49, 214
SacI	GAGCTC	2 cut(s)	102, 300
SaqAI	TTAA	1 cut(s)	312
Sau3AI	GATC	3 cut(s)	183, 228, 259
Sau96I	GGNCC	2 cut(s)	88, 306
ScrFI	CCNGG	1 cut(s)	40
SduI	GDGCHC	2 cut(s)	102, 300
SetI	ASST	3 cut(s)	50, 102, 300
SinI	GGWCC	2 cut(s)	88, 306
Sse9I	AATT	1 cut(s)	146
SsiI	CCGC	2 cut(s)	36, 175
SstI	GAGCTC	2 cut(s)	102, 300
StyD4I	CCNGG	1 cut(s)	38
StyI	CCWWGG	1 cut(s)	322
TaaI	ACNGT	1 cut(s)	203
TasI	AATT	1 cut(s)	146
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TscAI	CASTG	2 cut(s)	206, 307
TspDTI	ATGAA	1 cut(s)	153
TspRI	CASTG	2 cut(s)	206, 307
VpaK11BI	GGWCC	2 cut(s)	88, 306
XagI	CCTNNNNNAGG	1 cut(s)	43
XapI	RAATTY	1 cut(s)	146
XcmI	CCANNNNNNNNNTGG	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.