Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0017787

Physical Location & Seq

Genomic Coordinates Reverse (-)

71527835 .. 71529988

Gene Structure 2154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021058

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGGTAGACTTCAATACTCGTATGGTATCATTGGAATGAATCTCAGATCTGCCCAAAAGGTAAGAGTTCCGCTTCATCGATTAAAGATTTTTGAACAGTTACCGGTGTTAATCCTTATACTACTTTTACAAGGGTACACTTTCCGAGTTTCTGATGGAAAGATAGTGGCTGTGAAGCAACTTTCAGTAGCATCTCACCAAGGGAAGAGTCAATTTACTGCAGACATTGCTACCATATCTAGAAAAGCTCATTTCTTTACTAGTTTTTCAGTGTTGTTCATCACTATTGGCTTCTTCCATGTTGGTTATCCAAGATTTTCTGGTATACTGGTATCTGACCGCCCATATATTATGTTCAGATACATACATATTTCAGTTCCAGGCAAGCAGTACAGGATATTTGCAAACTCTAATAATAATGGAACCAGTGAGCAACCTCTTGGTATGTTACCTCTTCAAATCCGTGGTTCCCTTGGACAGTTTTCGGAGATGACACTTGTGGGCCACTCCTCAGACAGTTTTGCACGACTTGCTGCAGCATTAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006501 GO:0006807 GO:0006914 GO:0006950 GO:0006952 GO:0006995 GO:0006996 GO:0007005 GO:0007033 GO:0007154 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008641 GO:0009056 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0009991 GO:0010150 GO:0016043 GO:0016236 GO:0016237 GO:0016740 GO:0016874 GO:0016877 GO:0018410 GO:0019538 GO:0019778 GO:0019779 GO:0022411 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0034645 GO:0034727 GO:0036211 GO:0042157 GO:0042158 GO:0042594 GO:0043170 GO:0043207 GO:0043412 GO:0043562 GO:0043687 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0044805 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061726 GO:0061919 GO:0070925 GO:0071496 GO:0071704 GO:0071840 GO:0090693 GO:0098542 GO:0099402 GO:1901564 GO:1901566 GO:1901576 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 ko04216 map04136 map04138 map04140 map04216

Pfam Domains

Protein Families

ATG7_N ThiF

Protein Analysis

183

Amino Acids

20.36

Weight (kDa)

10.5

Isoelectric Point (pI)

30.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017787)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0132441
rosa_laevigata	RLG00000021058
rosa_roxburghii	Rroxscaffold_1G00020600 Rroxscaffold_2G00113150 Rroxscaffold_3G00238980 Rroxscaffold_4G00293780 Rroxscaffold_6G00420930 Rroxscaffold_7G00201450
rosa_samantha	Rh1BG080500 Rh2BG245100 Rh2CG290600 Rh5AG029400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	7, 325
AciI	CCGC	2 cut(s)	71, 340
AfaI	GTAC	2 cut(s)	137, 392
AgeI	ACCGGT	1 cut(s)	103
AgsI	TTSAA	3 cut(s)	14, 95, 458
AhlI	ACTAGT	1 cut(s)	260
AjnI	CCWGG	1 cut(s)	379
AluBI	AGCT	1 cut(s)	248
AluI	AGCT	1 cut(s)	248
AoxI	GGCC	1 cut(s)	502
ApeKI	GCWGC	2 cut(s)	533, 536
AsiGI	ACCGGT	1 cut(s)	103
AspS9I	GGNCC	1 cut(s)	502
AsuHPI	GGTGA	1 cut(s)	188
BbvI	GCAGC	1 cut(s)	520
BccI	CCATC	1 cut(s)	149
BciT130I	CCWGG	1 cut(s)	381
BcuI	ACTAGT	1 cut(s)	260
BfaI	CTAG	2 cut(s)	240, 261
BfmI	CTRYAG	2 cut(s)	219, 534
BglII	AGATCT	1 cut(s)	47
BisI	GCNGC	2 cut(s)	534, 537
BlsI	GCNGC	2 cut(s)	535, 538
Bme1390I	CCNGG	1 cut(s)	381
BmgT120I	GGNCC	1 cut(s)	502
BmiI	GGNNCC	2 cut(s)	424, 469
BmrFI	CCNGG	1 cut(s)	381
BmsI	GCATC	1 cut(s)	200
Bsa29I	ATCGAT	1 cut(s)	79
BsaJI	CCNNGG	3 cut(s)	199, 463, 472
BsaWI	WCCGGW	1 cut(s)	103
Bse118I	RCCGGY	1 cut(s)	103
Bse1I	ACTGG	2 cut(s)	333, 426
Bse3DI	GCAATG	1 cut(s)	225
BseBI	CCWGG	1 cut(s)	381
BseCI	ATCGAT	1 cut(s)	79
BseDI	CCNNGG	3 cut(s)	199, 463, 472
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	2 cut(s)	58, 525
BseNI	ACTGG	2 cut(s)	333, 426
BseRI	GAGGAG	1 cut(s)	499
BseXI	GCAGC	1 cut(s)	520
BshFI	GGCC	1 cut(s)	504
BshTI	ACCGGT	1 cut(s)	103
BshVI	ATCGAT	1 cut(s)	79
BsiSI	CCGG	1 cut(s)	104
BsnI	GGCC	1 cut(s)	504
Bsp143I	GATC	1 cut(s)	47
BspACI	CCGC	2 cut(s)	71, 340
BspANI	GGCC	1 cut(s)	504
BspCNI	CTCAG	2 cut(s)	57, 524
BspDI	ATCGAT	1 cut(s)	79
BspLI	GGNNCC	2 cut(s)	424, 469
BspMAI	CTGCAG	2 cut(s)	223, 538
BsrDI	GCAATG	1 cut(s)	225
BsrFI	RCCGGY	1 cut(s)	103
BsrI	ACTGG	2 cut(s)	333, 426
BssAI	RCCGGY	1 cut(s)	103
BssECI	CCNNGG	3 cut(s)	199, 463, 472
BssMI	GATC	1 cut(s)	47
BssNAI	GTATAC	1 cut(s)	326
BssT1I	CCWWGG	2 cut(s)	199, 472
Bst1107I	GTATAC	1 cut(s)	326
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	3 cut(s)	99, 480, 518
Bst6I	CTCTTC	2 cut(s)	200, 459
BstAPI	GCANNNNNTGC	2 cut(s)	227, 530
BstC8I	GCNNGC	1 cut(s)	386
BstDEI	CTNAG	2 cut(s)	44, 511
BstDSI	CCRYGG	1 cut(s)	463
BstKTI	GATC	1 cut(s)	50
BstMBI	GATC	1 cut(s)	47
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 530
BstNI	CCWGG	1 cut(s)	381
BstSCI	CCNGG	1 cut(s)	379
BstSFI	CTRYAG	2 cut(s)	219, 534
BstV1I	GCAGC	1 cut(s)	520
BstX2I	RGATCY	1 cut(s)	47
BstYI	RGATCY	1 cut(s)	47
BstZ17I	GTATAC	1 cut(s)	326
Bsu15I	ATCGAT	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	504
BsuTUI	ATCGAT	1 cut(s)	79
BtgI	CCRYGG	1 cut(s)	463
BtsIMutI	CAGTG	2 cut(s)	276, 433
Cac8I	GCNNGC	1 cut(s)	386
Cfr10I	RCCGGY	1 cut(s)	103
Cfr13I	GGNCC	1 cut(s)	502
ClaI	ATCGAT	1 cut(s)	79
Csp6I	GTAC	2 cut(s)	136, 391
CspAI	ACCGGT	1 cut(s)	103
CviAII	CATG	1 cut(s)	299
CviJI	RGCY	4 cut(s)	170, 248, 291, 504
CviKI_1	RGCY	4 cut(s)	170, 248, 291, 504
CviQI	GTAC	2 cut(s)	136, 391
DdeI	CTNAG	2 cut(s)	44, 511
DpnI	GATC	1 cut(s)	49
DpnII	GATC	1 cut(s)	47
Eam1104I	CTCTTC	2 cut(s)	200, 459
EarI	CTCTTC	2 cut(s)	200, 459
Eco130I	CCWWGG	2 cut(s)	199, 472
EcoRII	CCWGG	1 cut(s)	379
EcoT14I	CCWWGG	2 cut(s)	199, 472
ErhI	CCWWGG	2 cut(s)	199, 472
FaeI	CATG	1 cut(s)	302
FatI	CATG	1 cut(s)	298
FblI	GTMKAC	2 cut(s)	7, 325
Fnu4HI	GCNGC	2 cut(s)	534, 537
Fsp4HI	GCNGC	2 cut(s)	534, 537
FspBI	CTAG	2 cut(s)	240, 261
GluI	GCNGC	2 cut(s)	534, 537
HaeIII	GGCC	1 cut(s)	504
HapII	CCGG	1 cut(s)	104
Hin1II	CATG	1 cut(s)	302
HinfI	GANTC	2 cut(s)	40, 208
HpaII	CCGG	1 cut(s)	104
HphI	GGTGA	1 cut(s)	188
Hpy166II	GTNNAC	3 cut(s)	8, 138, 326
Hpy188I	TCNGA	7 cut(s)	47, 146, 154, 337, 359, 487, 514
Hpy188III	TCNNGA	1 cut(s)	240
Hpy8I	GTNNAC	3 cut(s)	8, 138, 326
HpyCH4III	ACNGT	3 cut(s)	99, 480, 518
HpyCH4V	TGCA	4 cut(s)	221, 404, 524, 536
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 530
HpyF3I	CTNAG	2 cut(s)	44, 511
Hsp92II	CATG	1 cut(s)	302
Kzo9I	GATC	1 cut(s)	47
LpnPI	CCDG	7 cut(s)	117, 306, 314, 366, 379, 393, 439
Lsp1109I	GCAGC	1 cut(s)	520
LweI	GCATC	1 cut(s)	200
MaeI	CTAG	2 cut(s)	240, 261
MaeIII	GTNAC	2 cut(s)	99, 447
MalI	GATC	1 cut(s)	49
MboI	GATC	1 cut(s)	47
MboII	GAAGA	3 cut(s)	217, 286, 446
MflI	RGATCY	1 cut(s)	47
MluCI	AATT	1 cut(s)	212
MlyI	GAGTC	1 cut(s)	217
MnlI	CCTC	3 cut(s)	447, 462, 520
MseI	TTAA	3 cut(s)	83, 110, 542
MslI	CAYNNNNRTG	1 cut(s)	35
MspI	CCGG	1 cut(s)	104
MspR9I	CCNGG	1 cut(s)	381
MvaI	CCWGG	1 cut(s)	381
MwoI	GCNNNNNNNGC	2 cut(s)	227, 530
NdeII	GATC	1 cut(s)	47
NlaIII	CATG	1 cut(s)	302
NlaIV	GGNNCC	2 cut(s)	424, 469
PfeI	GAWTC	1 cut(s)	40
PinAI	ACCGGT	1 cut(s)	103
PkrI	GCNGC	2 cut(s)	535, 538
PleI	GAGTC	1 cut(s)	216
PpsI	GAGTC	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	379
PspGI	CCWGG	1 cut(s)	379
PspN4I	GGNNCC	2 cut(s)	424, 469
PspPI	GGNCC	1 cut(s)	502
PstI	CTGCAG	2 cut(s)	223, 538
PsuI	RGATCY	1 cut(s)	47
RsaI	GTAC	2 cut(s)	137, 392
RsaNI	GTAC	2 cut(s)	136, 391
RseI	CAYNNNNRTG	1 cut(s)	35
SaqAI	TTAA	3 cut(s)	83, 110, 542
SatI	GCNGC	2 cut(s)	534, 537
Sau3AI	GATC	1 cut(s)	47
Sau96I	GGNCC	1 cut(s)	502
SchI	GAGTC	1 cut(s)	217
ScrFI	CCNGG	1 cut(s)	381
SetI	ASST	4 cut(s)	63, 250, 439, 454
SfaNI	GCATC	1 cut(s)	200
SfcI	CTRYAG	2 cut(s)	219, 534
SmiMI	CAYNNNNRTG	1 cut(s)	35
SpeI	ACTAGT	1 cut(s)	260
Sse9I	AATT	1 cut(s)	212
SsiI	CCGC	2 cut(s)	71, 340
SspMI	CTAG	2 cut(s)	240, 261
StyD4I	CCNGG	1 cut(s)	379
StyI	CCWWGG	2 cut(s)	199, 472
TaaI	ACNGT	3 cut(s)	99, 480, 518
TaqI	TCGA	1 cut(s)	79
TasI	AATT	1 cut(s)	212
TatI	WGTACW	1 cut(s)	390
TfiI	GAWTC	1 cut(s)	40
Tru1I	TTAA	3 cut(s)	83, 110, 542
Tru9I	TTAA	3 cut(s)	83, 110, 542
TscAI	CASTG	2 cut(s)	276, 433
TseI	GCWGC	2 cut(s)	533, 536
TspDTI	ATGAA	3 cut(s)	53, 65, 268
TspGWI	ACGGA	1 cut(s)	452
TspRI	CASTG	2 cut(s)	276, 433
XbaI	TCTAGA	1 cut(s)	239
XmiI	GTMKAC	2 cut(s)	7, 325
XspI	CTAG	2 cut(s)	240, 261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.