Ubiquitin-like modifier-activating enzyme
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0132441 |
| rosa_laevigata | RLG00000021058 |
| rosa_roxburghii | Rroxscaffold_1G00020600 Rroxscaffold_2G00113150 Rroxscaffold_3G00238980 Rroxscaffold_4G00293780 Rroxscaffold_6G00420930 Rroxscaffold_7G00201450 |
| rosa_samantha | Rh1BG080500 Rh2BG245100 Rh2CG290600 Rh5AG029400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 20 |
| AcoI | YGGCCR | 1 cut(s) | 103 |
| AcsI | RAATTY | 1 cut(s) | 31 |
| Alw26I | GTCTC | 1 cut(s) | 93 |
| AlwI | GGATC | 1 cut(s) | 20 |
| AoxI | GGCC | 2 cut(s) | 103, 230 |
| ApoI | RAATTY | 1 cut(s) | 31 |
| AspA2I | CCTAGG | 1 cut(s) | 202 |
| AspS9I | GGNCC | 1 cut(s) | 230 |
| AsuHPI | GGTGA | 1 cut(s) | 65 |
| AsuII | TTCGAA | 1 cut(s) | 121 |
| AvrII | CCTAGG | 1 cut(s) | 202 |
| BalI | TGGCCA | 1 cut(s) | 105 |
| BccI | CCATC | 1 cut(s) | 114 |
| BciVI | GTATCC | 1 cut(s) | 214 |
| BcoDI | GTCTC | 1 cut(s) | 93 |
| BfaI | CTAG | 2 cut(s) | 141, 203 |
| BfuI | GTATCC | 1 cut(s) | 214 |
| BglII | AGATCT | 2 cut(s) | 41, 67 |
| BlnI | CCTAGG | 1 cut(s) | 202 |
| BmgT120I | GGNCC | 1 cut(s) | 230 |
| BmiI | GGNNCC | 1 cut(s) | 199 |
| Bpu14I | TTCGAA | 1 cut(s) | 121 |
| BpuEI | CTTGAG | 1 cut(s) | 98 |
| BsaBI | GATNNNNATC | 1 cut(s) | 11 |
| BsaI | GGTCTC | 1 cut(s) | 93 |
| BsaJI | CCNNGG | 2 cut(s) | 193, 202 |
| Bse3DI | GCAATG | 1 cut(s) | 95 |
| Bse8I | GATNNNNATC | 1 cut(s) | 11 |
| BseDI | CCNNGG | 2 cut(s) | 193, 202 |
| BseGI | GGATG | 1 cut(s) | 106 |
| BseJI | GATNNNNATC | 1 cut(s) | 11 |
| BseMI | GCAATG | 1 cut(s) | 95 |
| BseRI | GAGGAG | 1 cut(s) | 227 |
| BsgI | GTGCAG | 1 cut(s) | 30 |
| BshFI | GGCC | 2 cut(s) | 105, 232 |
| BsmAI | GTCTC | 1 cut(s) | 93 |
| BsnI | GGCC | 2 cut(s) | 105, 232 |
| Bso31I | GGTCTC | 1 cut(s) | 93 |
| Bsp119I | TTCGAA | 1 cut(s) | 121 |
| Bsp143I | GATC | 3 cut(s) | 12, 41, 67 |
| Bsp19I | CCATGG | 1 cut(s) | 193 |
| BspANI | GGCC | 2 cut(s) | 105, 232 |
| BspLI | GGNNCC | 1 cut(s) | 199 |
| BspPI | GGATC | 1 cut(s) | 20 |
| BspT104I | TTCGAA | 1 cut(s) | 121 |
| BspTNI | GGTCTC | 1 cut(s) | 93 |
| BsrDI | GCAATG | 1 cut(s) | 95 |
| BssECI | CCNNGG | 2 cut(s) | 193, 202 |
| BssMI | GATC | 3 cut(s) | 12, 41, 67 |
| BssT1I | CCWWGG | 2 cut(s) | 193, 202 |
| BstBI | TTCGAA | 1 cut(s) | 121 |
| BstDEI | CTNAG | 1 cut(s) | 239 |
| BstDSI | CCRYGG | 1 cut(s) | 193 |
| BstF5I | GGATG | 1 cut(s) | 106 |
| BstKTI | GATC | 3 cut(s) | 15, 44, 70 |
| BstMAI | GTCTC | 1 cut(s) | 93 |
| BstMBI | GATC | 3 cut(s) | 12, 41, 67 |
| BstX2I | RGATCY | 2 cut(s) | 41, 67 |
| BstYI | RGATCY | 2 cut(s) | 41, 67 |
| BsuI | GTATCC | 1 cut(s) | 214 |
| BsuRI | GGCC | 2 cut(s) | 105, 232 |
| BtgI | CCRYGG | 1 cut(s) | 193 |
| BtsCI | GGATG | 1 cut(s) | 106 |
| BtsI | GCAGTG | 1 cut(s) | 163 |
| BtsIMutI | CAGTG | 1 cut(s) | 163 |
| Cfr13I | GGNCC | 1 cut(s) | 230 |
| CviAII | CATG | 5 cut(s) | 36, 53, 92, 101, 194 |
| CviJI | RGCY | 4 cut(s) | 59, 83, 105, 232 |
| CviKI_1 | RGCY | 4 cut(s) | 59, 83, 105, 232 |
| DdeI | CTNAG | 1 cut(s) | 239 |
| DpnI | GATC | 3 cut(s) | 14, 43, 69 |
| DpnII | GATC | 3 cut(s) | 12, 41, 67 |
| EaeI | YGGCCR | 1 cut(s) | 103 |
| Eco130I | CCWWGG | 2 cut(s) | 193, 202 |
| Eco31I | GGTCTC | 1 cut(s) | 93 |
| EcoRI | GAATTC | 1 cut(s) | 31 |
| EcoT14I | CCWWGG | 2 cut(s) | 193, 202 |
| EcoT22I | ATGCAT | 1 cut(s) | 97 |
| ErhI | CCWWGG | 2 cut(s) | 193, 202 |
| FaeI | CATG | 5 cut(s) | 39, 56, 95, 104, 197 |
| FaiI | YATR | 5 cut(s) | 37, 54, 93, 102, 195 |
| FatI | CATG | 5 cut(s) | 35, 52, 91, 100, 193 |
| FokI | GGATG | 1 cut(s) | 93 |
| FspBI | CTAG | 2 cut(s) | 141, 203 |
| HaeIII | GGCC | 2 cut(s) | 105, 232 |
| Hin1II | CATG | 5 cut(s) | 39, 56, 95, 104, 197 |
| HphI | GGTGA | 1 cut(s) | 65 |
| Hpy188I | TCNGA | 3 cut(s) | 17, 67, 242 |
| Hpy188III | TCNNGA | 1 cut(s) | 28 |
| HpyAV | CCTTC | 1 cut(s) | 117 |
| HpyCH4V | TGCA | 4 cut(s) | 47, 95, 100, 134 |
| HpyF3I | CTNAG | 1 cut(s) | 239 |
| Hsp92II | CATG | 5 cut(s) | 39, 56, 95, 104, 197 |
| Kzo9I | GATC | 3 cut(s) | 12, 41, 67 |
| LpnPI | CCDG | 2 cut(s) | 13, 203 |
| MaeI | CTAG | 2 cut(s) | 141, 203 |
| MalI | GATC | 3 cut(s) | 14, 43, 69 |
| MboI | GATC | 3 cut(s) | 12, 41, 67 |
| MboII | GAAGA | 1 cut(s) | 62 |
| MflI | RGATCY | 2 cut(s) | 41, 67 |
| MlsI | TGGCCA | 1 cut(s) | 105 |
| MluCI | AATT | 1 cut(s) | 31 |
| MluNI | TGGCCA | 1 cut(s) | 105 |
| MmeI | TCCRAC | 1 cut(s) | 134 |
| MnlI | CCTC | 4 cut(s) | 49, 73, 177, 192 |
| Mox20I | TGGCCA | 1 cut(s) | 105 |
| Mph1103I | ATGCAT | 1 cut(s) | 97 |
| MscI | TGGCCA | 1 cut(s) | 105 |
| Msp20I | TGGCCA | 1 cut(s) | 105 |
| NcoI | CCATGG | 1 cut(s) | 193 |
| NdeII | GATC | 3 cut(s) | 12, 41, 67 |
| NlaIII | CATG | 5 cut(s) | 39, 56, 95, 104, 197 |
| NlaIV | GGNNCC | 1 cut(s) | 199 |
| NsiI | ATGCAT | 1 cut(s) | 97 |
| NspV | TTCGAA | 1 cut(s) | 121 |
| PspN4I | GGNNCC | 1 cut(s) | 199 |
| PspPI | GGNCC | 1 cut(s) | 230 |
| PsuI | RGATCY | 2 cut(s) | 41, 67 |
| Sau3AI | GATC | 3 cut(s) | 12, 41, 67 |
| Sau96I | GGNCC | 1 cut(s) | 230 |
| SetI | ASST | 3 cut(s) | 78, 169, 184 |
| SfuI | TTCGAA | 1 cut(s) | 121 |
| SmlI | CTYRAG | 1 cut(s) | 77 |
| SmoI | CTYRAG | 1 cut(s) | 77 |
| Sse9I | AATT | 1 cut(s) | 31 |
| SspMI | CTAG | 2 cut(s) | 141, 203 |
| StyI | CCWWGG | 2 cut(s) | 193, 202 |
| TaqI | TCGA | 1 cut(s) | 121 |
| TaqII | GACCGA | 1 cut(s) | 75 |
| TasI | AATT | 1 cut(s) | 31 |
| TscAI | CASTG | 1 cut(s) | 163 |
| TspDTI | ATGAA | 2 cut(s) | 13, 24 |
| TspGWI | ACGGA | 1 cut(s) | 165 |
| TspRI | CASTG | 1 cut(s) | 163 |
| XapI | RAATTY | 1 cut(s) | 31 |
| XmaJI | CCTAGG | 1 cut(s) | 202 |
| XspI | CTAG | 2 cut(s) | 141, 203 |
| Zsp2I | ATGCAT | 1 cut(s) | 97 |