Rroxscaffold_6G00420930

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0017787
Physical Location & Seq
Forward (+)
42131194 .. 42134417
3224 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00420930.1

Sequence Viewer

Length: 318 bp
ATGGAACCGGTGAGCAACCTAGCTCTTGGTATTTTATCTCATCAAATCTGTGGTTCCCTTAGACAGTTTTTGGAGATGACACTTGTGGGCCACTCCTCATACAGTTTTGCACGACTTGCTGCAGCATTCAGTTTAAACCTTGTTCCAAACGCCTTCACGCGCGACCTACGGTGGTGGCACGCGGGGCCCACGCGCCGCTGGCCAACTTCACCTCCAACTACCAAATTTCAGCCACAAAATCTACTTAACAAGCCTAACACTTTTCTCAACTACAACAAGTTCCAATTTTACCTTAAAGTGCTCGAATTTGGCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

12.11

Weight (kDa)

10.36

Isoelectric Point (pI)

55.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 160, 162, 182, 193
AciI CCGC 2 cut(s) 182, 196
AcoI YGGCCR 2 cut(s) 200, 310
AcsI RAATTY 2 cut(s) 224, 305
AgeI ACCGGT 1 cut(s) 7
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
Alw21I GWGCWC 1 cut(s) 303
AoxI GGCC 4 cut(s) 88, 185, 200, 310
ApaI GGGCCC 1 cut(s) 189
ApeKI GCWGC 2 cut(s) 119, 122
ApoI RAATTY 2 cut(s) 224, 305
AsiGI ACCGGT 1 cut(s) 7
AspLEI GCGC 2 cut(s) 162, 195
AspS9I GGNCC 3 cut(s) 88, 185, 186
AsuHPI GGTGA 2 cut(s) 22, 201
BaeGI GKGCMC 1 cut(s) 189
BalI TGGCCA 1 cut(s) 202
BanII GRGCYC 1 cut(s) 189
Bbv12I GWGCWC 1 cut(s) 303
BbvI GCAGC 2 cut(s) 106, 134
BfaI CTAG 1 cut(s) 20
BfmI CTRYAG 1 cut(s) 120
BisI GCNGC 3 cut(s) 120, 123, 196
BlsI GCNGC 3 cut(s) 121, 124, 197
BmgT120I GGNCC 3 cut(s) 88, 185, 186
BmiI GGNNCC 4 cut(s) 6, 55, 186, 187
BsaWI WCCGGW 1 cut(s) 7
BsaXI ACNNNNNCTCC 2 cut(s) 196, 226
Bse118I RCCGGY 2 cut(s) 7, 312
BseRI GAGGAG 1 cut(s) 85
BseSI GKGCMC 1 cut(s) 189
BseXI GCAGC 2 cut(s) 106, 134
Bsh1236I CGCG 4 cut(s) 160, 162, 182, 193
BshFI GGCC 4 cut(s) 90, 187, 202, 312
BshTI ACCGGT 1 cut(s) 7
BsiHKAI GWGCWC 1 cut(s) 303
BsiSI CCGG 2 cut(s) 8, 313
BsmI GAATGC 1 cut(s) 125
BsnI GGCC 4 cut(s) 90, 187, 202, 312
Bsp120I GGGCCC 1 cut(s) 185
Bsp1286I GDGCHC 2 cut(s) 189, 303
BspACI CCGC 2 cut(s) 182, 196
BspANI GGCC 4 cut(s) 90, 187, 202, 312
BspFNI CGCG 4 cut(s) 160, 162, 182, 193
BspLI GGNNCC 4 cut(s) 6, 55, 186, 187
BspMAI CTGCAG 1 cut(s) 124
BsrFI RCCGGY 2 cut(s) 7, 312
BssAI RCCGGY 2 cut(s) 7, 312
Bst4CI ACNGT 3 cut(s) 66, 104, 171
BstAPI GCANNNNNTGC 1 cut(s) 116
BstC8I GCNNGC 2 cut(s) 180, 200
BstDEI CTNAG 1 cut(s) 59
BstFNI CGCG 4 cut(s) 160, 162, 182, 193
BstHHI GCGC 2 cut(s) 162, 195
BstMWI GCNNNNNNNGC 3 cut(s) 116, 184, 199
BstSFI CTRYAG 1 cut(s) 120
BstSLI GKGCMC 1 cut(s) 189
BstUI CGCG 4 cut(s) 160, 162, 182, 193
BstV1I GCAGC 2 cut(s) 106, 134
BsuRI GGCC 4 cut(s) 90, 187, 202, 312
Cac8I GCNNGC 2 cut(s) 180, 200
CfoI GCGC 2 cut(s) 162, 195
Cfr10I RCCGGY 2 cut(s) 7, 312
Cfr13I GGNCC 3 cut(s) 88, 185, 186
CspAI ACCGGT 1 cut(s) 7
CviJI RGCY 7 cut(s) 23, 90, 187, 202, 232, 253, 312
CviKI_1 RGCY 7 cut(s) 23, 90, 187, 202, 232, 253, 312
DdeI CTNAG 1 cut(s) 59
DraI TTTAAA 1 cut(s) 135
EaeI YGGCCR 2 cut(s) 200, 310
Eco24I GRGCYC 1 cut(s) 189
EcoO109I RGGNCCY 1 cut(s) 185
EcoT38I GRGCYC 1 cut(s) 189
FaiI YATR 1 cut(s) 100
FauI CCCGC 1 cut(s) 175
Fnu4HI GCNGC 3 cut(s) 120, 123, 196
FriOI GRGCYC 1 cut(s) 189
Fsp4HI GCNGC 3 cut(s) 120, 123, 196
FspBI CTAG 1 cut(s) 20
GlaI GCGC 2 cut(s) 161, 194
GluI GCNGC 3 cut(s) 120, 123, 196
HaeIII GGCC 4 cut(s) 90, 187, 202, 312
HapII CCGG 2 cut(s) 8, 313
HhaI GCGC 2 cut(s) 162, 195
Hin6I GCGC 2 cut(s) 160, 193
HinP1I GCGC 2 cut(s) 160, 193
HpaII CCGG 2 cut(s) 8, 313
HphI GGTGA 2 cut(s) 22, 201
HpyAV CCTTC 1 cut(s) 163
HpyCH4III ACNGT 3 cut(s) 66, 104, 171
HpyCH4V TGCA 2 cut(s) 110, 122
HpyF10VI GCNNNNNNNGC 3 cut(s) 116, 184, 199
HpyF3I CTNAG 1 cut(s) 59
HspAI GCGC 2 cut(s) 160, 193
LpnPI CCDG 2 cut(s) 21, 184
Lsp1109I GCAGC 2 cut(s) 106, 134
MaeI CTAG 1 cut(s) 20
MhlI GDGCHC 2 cut(s) 189, 303
MlsI TGGCCA 1 cut(s) 202
MluCI AATT 3 cut(s) 224, 284, 305
MluNI TGGCCA 1 cut(s) 202
MmeI TCCRAC 1 cut(s) 239
MnlI CCTC 2 cut(s) 106, 222
Mox20I TGGCCA 1 cut(s) 202
MscI TGGCCA 1 cut(s) 202
MseI TTAA 3 cut(s) 134, 246, 294
Msp20I TGGCCA 1 cut(s) 202
MspA1I CMGCKG 1 cut(s) 198
MspI CCGG 2 cut(s) 8, 313
MssI GTTTAAAC 1 cut(s) 135
Mva1269I GAATGC 1 cut(s) 125
MvnI CGCG 4 cut(s) 160, 162, 182, 193
MwoI GCNNNNNNNGC 3 cut(s) 116, 184, 199
NlaIV GGNNCC 4 cut(s) 6, 55, 186, 187
PctI GAATGC 1 cut(s) 125
PinAI ACCGGT 1 cut(s) 7
PkrI GCNGC 3 cut(s) 121, 124, 197
PmeI GTTTAAAC 1 cut(s) 135
PspN4I GGNNCC 4 cut(s) 6, 55, 186, 187
PspOMI GGGCCC 1 cut(s) 185
PspPI GGNCC 3 cut(s) 88, 185, 186
PstI CTGCAG 1 cut(s) 124
SaqAI TTAA 3 cut(s) 134, 246, 294
SatI GCNGC 3 cut(s) 120, 123, 196
Sau96I GGNCC 3 cut(s) 88, 185, 186
SduI GDGCHC 2 cut(s) 189, 303
SetI ASST 6 cut(s) 21, 25, 141, 168, 214, 294
SfcI CTRYAG 1 cut(s) 120
Sse9I AATT 3 cut(s) 224, 284, 305
SsiI CCGC 2 cut(s) 182, 196
SspMI CTAG 1 cut(s) 20
TaaI ACNGT 3 cut(s) 66, 104, 171
TaqI TCGA 1 cut(s) 303
TasI AATT 3 cut(s) 224, 284, 305
TauI GCSGC 1 cut(s) 198
Tru1I TTAA 3 cut(s) 134, 246, 294
Tru9I TTAA 3 cut(s) 134, 246, 294
TseI GCWGC 2 cut(s) 119, 122
XapI RAATTY 2 cut(s) 224, 305
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.