Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0017787

Physical Location & Seq

Genomic Coordinates Forward (+)

12616261 .. 12622374

Gene Structure 6114 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG080500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCATCGGCTAAGTCAAAATCATCATCAAATGAGCAATCGCCCTTTGAAGTGAAGTGCTCATTAGATTGCTCAAGGTCTCCGGGCTTGAAAGATTTGAACCAATTTGGAAAAGCTCATTTCTTTACTAGTTTTTCAGTGTTGTTCATCACTATTGACTTCTTCCATGTTGGTTATCCAAGATGTTCTGGTATACTGGTATCTGACCGCCCATATATTCTGTTCAGATACATACATATTTCAGTTCCAGGCAAGCAGTACAGGATATTTGCAAACTCTAGTAATAATGGAACCAGTGAGCAACCTCTTGGTATATTACCTCATCAAATCTGTGGTTCCCTTGGACAGTTTTCGGAGTTGACACTTGTGGGCCACTCCTCAGACAGTTTTGCACGACTTGCTGCAGCATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006501 GO:0006807 GO:0006914 GO:0006950 GO:0006952 GO:0006995 GO:0006996 GO:0007005 GO:0007033 GO:0007154 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008641 GO:0009056 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0009991 GO:0010150 GO:0016043 GO:0016236 GO:0016237 GO:0016740 GO:0016874 GO:0016877 GO:0018410 GO:0019538 GO:0019778 GO:0019779 GO:0022411 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0034645 GO:0034727 GO:0036211 GO:0042157 GO:0042158 GO:0042594 GO:0043170 GO:0043207 GO:0043412 GO:0043562 GO:0043687 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0044805 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061726 GO:0061919 GO:0070925 GO:0071496 GO:0071704 GO:0071840 GO:0090693 GO:0098542 GO:0099402 GO:1901564 GO:1901566 GO:1901576 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 ko04216 map04136 map04138 map04140 map04216

Pfam Domains

Protein Families

ATG7_N ThiF

Protein Analysis

137

Amino Acids

15.03

Weight (kDa)

8.77

Isoelectric Point (pI)

41.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017787)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0132441
rosa_laevigata	RLG00000021058
rosa_roxburghii	Rroxscaffold_1G00020600 Rroxscaffold_2G00113150 Rroxscaffold_3G00238980 Rroxscaffold_4G00293780 Rroxscaffold_6G00420930 Rroxscaffold_7G00201450
rosa_samantha	Rh1BG080500 Rh2BG245100 Rh2CG290600 Rh5AG029400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	193
AciI	CCGC	1 cut(s)	208
AfaI	GTAC	1 cut(s)	260
AgsI	TTSAA	3 cut(s)	50, 91, 100
AhlI	ACTAGT	1 cut(s)	128
AjnI	CCWGG	1 cut(s)	247
AluBI	AGCT	1 cut(s)	116
AluI	AGCT	1 cut(s)	116
Alw21I	GWGCWC	1 cut(s)	62
Alw26I	GTCTC	1 cut(s)	84
AoxI	GGCC	1 cut(s)	370
ApeKI	GCWGC	2 cut(s)	401, 404
AspS9I	GGNCC	1 cut(s)	370
AsuC2I	CCSGG	1 cut(s)	84
Bbv12I	GWGCWC	1 cut(s)	62
BbvI	GCAGC	1 cut(s)	388
BciT130I	CCWGG	1 cut(s)	249
BcnI	CCSGG	1 cut(s)	84
BcoDI	GTCTC	1 cut(s)	84
BcuI	ACTAGT	1 cut(s)	128
BfaI	CTAG	2 cut(s)	129, 279
BfmI	CTRYAG	1 cut(s)	402
BisI	GCNGC	2 cut(s)	402, 405
BlsI	GCNGC	2 cut(s)	403, 406
Bme1390I	CCNGG	2 cut(s)	84, 249
BmgT120I	GGNCC	1 cut(s)	370
BmiI	GGNNCC	2 cut(s)	292, 337
BmrFI	CCNGG	2 cut(s)	84, 249
BmsI	GCATC	1 cut(s)	14
BpuEI	CTTGAG	1 cut(s)	58
BpuMI	CCSGG	1 cut(s)	84
BsaI	GGTCTC	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	340
Bse1I	ACTGG	2 cut(s)	201, 294
BseBI	CCWGG	1 cut(s)	249
BseDI	CCNNGG	1 cut(s)	340
BseMII	CTCAG	1 cut(s)	393
BseNI	ACTGG	2 cut(s)	201, 294
BseRI	GAGGAG	1 cut(s)	367
BseXI	GCAGC	1 cut(s)	388
BshFI	GGCC	1 cut(s)	372
BsiHKAI	GWGCWC	1 cut(s)	62
BsiSI	CCGG	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	84
BsnI	GGCC	1 cut(s)	372
Bso31I	GGTCTC	1 cut(s)	84
Bsp1286I	GDGCHC	1 cut(s)	62
BspACI	CCGC	1 cut(s)	208
BspANI	GGCC	1 cut(s)	372
BspCNI	CTCAG	1 cut(s)	392
BspLI	GGNNCC	2 cut(s)	292, 337
BspMAI	CTGCAG	1 cut(s)	406
BspTNI	GGTCTC	1 cut(s)	84
BsrI	ACTGG	2 cut(s)	201, 294
BssECI	CCNNGG	1 cut(s)	340
BssNAI	GTATAC	1 cut(s)	194
BssT1I	CCWWGG	1 cut(s)	340
Bst1107I	GTATAC	1 cut(s)	194
Bst2UI	CCWGG	1 cut(s)	249
Bst4CI	ACNGT	2 cut(s)	348, 386
BstAPI	GCANNNNNTGC	1 cut(s)	398
BstC8I	GCNNGC	1 cut(s)	254
BstDEI	CTNAG	2 cut(s)	12, 379
BstMAI	GTCTC	1 cut(s)	84
BstMWI	GCNNNNNNNGC	1 cut(s)	398
BstNI	CCWGG	1 cut(s)	249
BstSCI	CCNGG	2 cut(s)	82, 247
BstSFI	CTRYAG	1 cut(s)	402
BstV1I	GCAGC	1 cut(s)	388
BstZ17I	GTATAC	1 cut(s)	194
BsuRI	GGCC	1 cut(s)	372
BtsIMutI	CAGTG	2 cut(s)	144, 301
Cac8I	GCNNGC	1 cut(s)	254
Cfr13I	GGNCC	1 cut(s)	370
Csp6I	GTAC	1 cut(s)	259
CviAII	CATG	1 cut(s)	167
CviJI	RGCY	4 cut(s)	11, 87, 116, 372
CviKI_1	RGCY	4 cut(s)	11, 87, 116, 372
CviQI	GTAC	1 cut(s)	259
DdeI	CTNAG	2 cut(s)	12, 379
Eco130I	CCWWGG	1 cut(s)	340
Eco31I	GGTCTC	1 cut(s)	84
EcoRII	CCWGG	1 cut(s)	247
EcoT14I	CCWWGG	1 cut(s)	340
ErhI	CCWWGG	1 cut(s)	340
FaeI	CATG	1 cut(s)	170
FaiI	YATR	7 cut(s)	168, 194, 214, 216, 233, 237, 314
FatI	CATG	1 cut(s)	166
FblI	GTMKAC	1 cut(s)	193
Fnu4HI	GCNGC	2 cut(s)	402, 405
Fsp4HI	GCNGC	2 cut(s)	402, 405
FspBI	CTAG	2 cut(s)	129, 279
GluI	GCNGC	2 cut(s)	402, 405
HaeIII	GGCC	1 cut(s)	372
HapII	CCGG	1 cut(s)	83
Hin1II	CATG	1 cut(s)	170
HincII	GTYRAC	1 cut(s)	360
HindII	GTYRAC	1 cut(s)	360
HpaII	CCGG	1 cut(s)	83
Hpy166II	GTNNAC	2 cut(s)	194, 360
Hpy188I	TCNGA	4 cut(s)	205, 227, 355, 382
Hpy8I	GTNNAC	2 cut(s)	194, 360
HpyCH4III	ACNGT	2 cut(s)	348, 386
HpyCH4V	TGCA	3 cut(s)	272, 392, 404
HpyF10VI	GCNNNNNNNGC	1 cut(s)	398
HpyF3I	CTNAG	2 cut(s)	12, 379
Hsp92II	CATG	1 cut(s)	170
LpnPI	CCDG	7 cut(s)	96, 174, 182, 234, 247, 261, 307
Lsp1109I	GCAGC	1 cut(s)	388
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	2 cut(s)	129, 279
MboII	GAAGA	1 cut(s)	154
MhlI	GDGCHC	1 cut(s)	62
MluCI	AATT	1 cut(s)	104
MnlI	CCTC	3 cut(s)	315, 330, 388
MspI	CCGG	1 cut(s)	83
MspR9I	CCNGG	2 cut(s)	84, 249
MvaI	CCWGG	1 cut(s)	249
MwoI	GCNNNNNNNGC	1 cut(s)	398
NciI	CCSGG	1 cut(s)	84
NlaIII	CATG	1 cut(s)	170
NlaIV	GGNNCC	2 cut(s)	292, 337
PkrI	GCNGC	2 cut(s)	403, 406
Psp6I	CCWGG	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	247
PspN4I	GGNNCC	2 cut(s)	292, 337
PspPI	GGNCC	1 cut(s)	370
PstI	CTGCAG	1 cut(s)	406
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
SatI	GCNGC	2 cut(s)	402, 405
Sau96I	GGNCC	1 cut(s)	370
ScrFI	CCNGG	2 cut(s)	84, 249
SduI	GDGCHC	1 cut(s)	62
SetI	ASST	4 cut(s)	80, 118, 307, 322
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	1 cut(s)	402
SmlI	CTYRAG	1 cut(s)	73
SmoI	CTYRAG	1 cut(s)	73
SpeI	ACTAGT	1 cut(s)	128
Sse9I	AATT	1 cut(s)	104
SsiI	CCGC	1 cut(s)	208
SspMI	CTAG	2 cut(s)	129, 279
StyD4I	CCNGG	2 cut(s)	82, 247
StyI	CCWWGG	1 cut(s)	340
TaaI	ACNGT	2 cut(s)	348, 386
TasI	AATT	1 cut(s)	104
TatI	WGTACW	1 cut(s)	258
TscAI	CASTG	2 cut(s)	144, 301
TseI	GCWGC	2 cut(s)	401, 404
TspDTI	ATGAA	1 cut(s)	136
TspRI	CASTG	2 cut(s)	144, 301
XmiI	GTMKAC	1 cut(s)	193
XspI	CTAG	2 cut(s)	129, 279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.