Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0017787

Physical Location & Seq

Genomic Coordinates Forward (+)

27513629 .. 27524745

Gene Structure 11117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00238980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGAGGAGCAATTGTTGCAAAAGAGAGCTGGAACTGTAGGGGAGTATCTCTATGGGACGGAACCCTTCAAGGAGAAACTGACTAAGGAGAGATTTGCTCAAGGAAATATCCGACCGAAACCTGCCTTACGCACCTCCGGGCGCCACCTACGGTGGCAGTGCGTGGGGCCCAAGAGCTTCCGGTCACCAACTTTGATGACCACCAAATTTTGGCAGCAACAACTACTCAACAAGCCCAACACTTTTCTTAGCTACAACAAATTCCAATTTTACCTTGAAGTGCACGAGATTGGCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

99

Amino Acids

11.75

Weight (kDa)

10.07

Isoelectric Point (pI)

58.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017787)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0132441
rosa_laevigata	RLG00000021058
rosa_roxburghii	Rroxscaffold_1G00020600 Rroxscaffold_2G00113150 Rroxscaffold_3G00238980 Rroxscaffold_4G00293780 Rroxscaffold_6G00420930 Rroxscaffold_7G00201450
rosa_samantha	Rh1BG080500 Rh2BG245100 Rh2CG290600 Rh5AG029400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	130
AccB1I	GGYRCC	1 cut(s)	141
AccB7I	CCANNNNNTGG	1 cut(s)	210
AcoI	YGGCCR	1 cut(s)	292
AcsI	RAATTY	2 cut(s)	206, 260
AcyI	GRCGYC	1 cut(s)	142
AfiI	CCNNNNNNNGG	1 cut(s)	210
AgsI	TTSAA	2 cut(s)	70, 278
AluBI	AGCT	3 cut(s)	29, 177, 252
AluI	AGCT	3 cut(s)	29, 177, 252
Alw21I	GWGCWC	1 cut(s)	285
Alw44I	GTGCAC	1 cut(s)	281
AoxI	GGCC	2 cut(s)	167, 292
ApaI	GGGCCC	1 cut(s)	171
ApaLI	GTGCAC	1 cut(s)	281
ApeKI	GCWGC	1 cut(s)	214
ApoI	RAATTY	2 cut(s)	206, 260
AspLEI	GCGC	1 cut(s)	144
AspS9I	GGNCC	2 cut(s)	167, 168
AsuC2I	CCSGG	1 cut(s)	139
AsuHPI	GGTGA	1 cut(s)	177
BaeGI	GKGCMC	2 cut(s)	171, 285
BanI	GGYRCC	1 cut(s)	141
BanII	GRGCYC	1 cut(s)	171
BauI	CACGAG	1 cut(s)	284
Bbv12I	GWGCWC	1 cut(s)	285
BbvI	GCAGC	1 cut(s)	226
BcnI	CCSGG	1 cut(s)	139
BfmI	CTRYAG	1 cut(s)	36
BfoI	RGCGCY	1 cut(s)	145
BfuAI	ACCTGC	1 cut(s)	130
BisI	GCNGC	1 cut(s)	215
BlsI	GCNGC	1 cut(s)	216
Bme1390I	CCNGG	1 cut(s)	139
BmgT120I	GGNCC	2 cut(s)	167, 168
BmiI	GGNNCC	4 cut(s)	63, 143, 168, 169
BmrFI	CCNGG	1 cut(s)	139
BplI	GAGNNNNNCTC	2 cut(s)	82, 114
BpuEI	CTTGAG	1 cut(s)	84
BpuMI	CCSGG	1 cut(s)	139
BsaHI	GRCGYC	1 cut(s)	142
BsaWI	WCCGGW	1 cut(s)	180
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	1 cut(s)	210
Bse118I	RCCGGY	1 cut(s)	294
BseLI	CCNNNNNNNGG	1 cut(s)	210
BseRI	GAGGAG	1 cut(s)	20
BseSI	GKGCMC	2 cut(s)	171, 285
BseXI	GCAGC	1 cut(s)	226
Bsh1285I	CGRYCG	1 cut(s)	116
BshFI	GGCC	2 cut(s)	169, 294
BshNI	GGYRCC	1 cut(s)	141
BsiEI	CGRYCG	1 cut(s)	116
BsiHKAI	GWGCWC	1 cut(s)	285
BsiSI	CCGG	3 cut(s)	138, 181, 295
BslFI	GGGAC	1 cut(s)	70
BslI	CCNNNNNNNGG	1 cut(s)	210
BsmFI	GGGAC	1 cut(s)	70
BsnI	GGCC	2 cut(s)	169, 294
Bsp120I	GGGCCC	1 cut(s)	167
Bsp1286I	GDGCHC	2 cut(s)	171, 285
BspANI	GGCC	2 cut(s)	169, 294
BspLI	GGNNCC	4 cut(s)	63, 143, 168, 169
BspMI	ACCTGC	1 cut(s)	130
BspT107I	GGYRCC	1 cut(s)	141
BsrFI	RCCGGY	1 cut(s)	294
BssAI	RCCGGY	1 cut(s)	294
BssNI	GRCGYC	1 cut(s)	142
BssSI	CACGAG	1 cut(s)	284
Bst2BI	CACGAG	1 cut(s)	284
Bst4CI	ACNGT	2 cut(s)	37, 153
BstACI	GRCGYC	1 cut(s)	142
BstAPI	GCANNNNNTGC	1 cut(s)	16
BstDEI	CTNAG	2 cut(s)	84, 248
BstEII	GGTNACC	1 cut(s)	183
BstH2I	RGCGCY	1 cut(s)	145
BstHHI	GCGC	1 cut(s)	144
BstMCI	CGRYCG	1 cut(s)	116
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstPI	GGTNACC	1 cut(s)	183
BstSCI	CCNGG	1 cut(s)	137
BstSFI	CTRYAG	1 cut(s)	36
BstSLI	GKGCMC	2 cut(s)	171, 285
BstV1I	GCAGC	1 cut(s)	226
BsuRI	GGCC	2 cut(s)	169, 294
BtsI	GCAGTG	1 cut(s)	164
BtsIMutI	CAGTG	1 cut(s)	164
BveI	ACCTGC	1 cut(s)	130
CfoI	GCGC	1 cut(s)	144
Cfr10I	RCCGGY	1 cut(s)	294
Cfr13I	GGNCC	2 cut(s)	167, 168
CviJI	RGCY	6 cut(s)	29, 169, 177, 235, 252, 294
CviKI_1	RGCY	6 cut(s)	29, 169, 177, 235, 252, 294
DdeI	CTNAG	2 cut(s)	84, 248
DinI	GGCGCC	1 cut(s)	143
EaeI	YGGCCR	1 cut(s)	292
Eco24I	GRGCYC	1 cut(s)	171
Eco91I	GGTNACC	1 cut(s)	183
EcoO109I	RGGNCCY	1 cut(s)	167
EcoO65I	GGTNACC	1 cut(s)	183
EcoT38I	GRGCYC	1 cut(s)	171
EgeI	GGCGCC	1 cut(s)	143
EheI	GGCGCC	1 cut(s)	143
FaiI	YATR	1 cut(s)	54
FaqI	GGGAC	1 cut(s)	70
Fnu4HI	GCNGC	1 cut(s)	215
FriOI	GRGCYC	1 cut(s)	171
Fsp4HI	GCNGC	1 cut(s)	215
GlaI	GCGC	1 cut(s)	143
GluI	GCNGC	1 cut(s)	215
HaeII	RGCGCY	1 cut(s)	145
HaeIII	GGCC	2 cut(s)	169, 294
HapII	CCGG	3 cut(s)	138, 181, 295
HhaI	GCGC	1 cut(s)	144
Hin1I	GRCGYC	1 cut(s)	142
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HpaII	CCGG	3 cut(s)	138, 181, 295
HphI	GGTGA	1 cut(s)	177
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	1 cut(s)	113
Hpy8I	GTNNAC	1 cut(s)	283
HpyAV	CCTTC	1 cut(s)	76
HpyCH4III	ACNGT	2 cut(s)	37, 153
HpyCH4V	TGCA	2 cut(s)	19, 283
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
HpyF3I	CTNAG	2 cut(s)	84, 248
Hsp92I	GRCGYC	1 cut(s)	142
HspAI	GCGC	1 cut(s)	142
KasI	GGCGCC	1 cut(s)	141
LmnI	GCTCC	1 cut(s)	7
LpnPI	CCDG	4 cut(s)	15, 135, 151, 194
Lsp1109I	GCAGC	1 cut(s)	226
MaeIII	GTNAC	1 cut(s)	183
MfeI	CAATTG	1 cut(s)	11
MhlI	GDGCHC	2 cut(s)	171, 285
MluCI	AATT	4 cut(s)	11, 206, 260, 266
Mly113I	GGCGCC	1 cut(s)	142
MmeI	TCCRAC	1 cut(s)	136
MnlI	CCTC	1 cut(s)	145
MspI	CCGG	3 cut(s)	138, 181, 295
MspR9I	CCNGG	1 cut(s)	139
MunI	CAATTG	1 cut(s)	11
MwoI	GCNNNNNNNGC	1 cut(s)	16
NarI	GGCGCC	1 cut(s)	142
NciI	CCSGG	1 cut(s)	139
NlaIV	GGNNCC	4 cut(s)	63, 143, 168, 169
NmuCI	GTSAC	1 cut(s)	183
PflMI	CCANNNNNTGG	1 cut(s)	210
PkrI	GCNGC	1 cut(s)	216
PluTI	GGCGCC	1 cut(s)	145
PspEI	GGTNACC	1 cut(s)	183
PspN4I	GGNNCC	4 cut(s)	63, 143, 168, 169
PspOMI	GGGCCC	1 cut(s)	167
PspPI	GGNCC	2 cut(s)	167, 168
SatI	GCNGC	1 cut(s)	215
Sau96I	GGNCC	2 cut(s)	167, 168
ScrFI	CCNGG	1 cut(s)	139
SduI	GDGCHC	2 cut(s)	171, 285
SetI	ASST	7 cut(s)	31, 124, 137, 150, 179, 254, 276
SfcI	CTRYAG	1 cut(s)	36
SfoI	GGCGCC	1 cut(s)	143
SmlI	CTYRAG	1 cut(s)	99
SmoI	CTYRAG	1 cut(s)	99
Sse9I	AATT	4 cut(s)	11, 206, 260, 266
SspDI	GGCGCC	1 cut(s)	141
StyD4I	CCNGG	1 cut(s)	137
TaaI	ACNGT	2 cut(s)	37, 153
TaqII	GACCGA	1 cut(s)	130
TasI	AATT	4 cut(s)	11, 206, 260, 266
TscAI	CASTG	1 cut(s)	164
TseFI	GTSAC	1 cut(s)	183
TseI	GCWGC	1 cut(s)	214
Tsp45I	GTSAC	1 cut(s)	183
TspGWI	ACGGA	1 cut(s)	74
TspRI	CASTG	1 cut(s)	164
Van91I	CCANNNNNTGG	1 cut(s)	210
VneI	GTGCAC	1 cut(s)	281
XapI	RAATTY	2 cut(s)	206, 260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.