Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0017787

Physical Location & Seq

Genomic Coordinates Reverse (-)

32825393 .. 32832685

Gene Structure 7293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG290600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGAAGATTGAAGATAAGAGCAGAGCTGCAGCCATTACAGTGTTGTTCATCACTATTGGCTTCTTCCATGTTGGTTATCCAAGATCTTCTGGTATACTGGTATCTGACCGCCCATATATTCTGTTCAGATACATACATATTTCAGTTCCAGGCAAGCAGTATAGGATATTTGCAAACTCTAGTAATAATGGAACTAGTGAGCAACCTCTTGGTATATTACCTCATCAAATCCGTGGTTCCCTCAGACAGTTTTCGGAGATGCCACTTGTGGGCCACTCCTCAGACAGTTTTGCACGACTTGCTGCAGCATTGAGCAGGCAAATGGTATGGCAGAATATTACTTTGCTTGACAGTTTCTTCTGGATATCAGACGTATATAAGGTAATCATATACCCATTTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006501 GO:0006807 GO:0006914 GO:0006950 GO:0006952 GO:0006995 GO:0006996 GO:0007005 GO:0007033 GO:0007154 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008641 GO:0009056 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0009991 GO:0010150 GO:0016043 GO:0016236 GO:0016237 GO:0016740 GO:0016874 GO:0016877 GO:0018410 GO:0019538 GO:0019778 GO:0019779 GO:0022411 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0034645 GO:0034727 GO:0036211 GO:0042157 GO:0042158 GO:0042594 GO:0043170 GO:0043207 GO:0043412 GO:0043562 GO:0043687 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0044805 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061726 GO:0061919 GO:0070925 GO:0071496 GO:0071704 GO:0071840 GO:0090693 GO:0098542 GO:0099402 GO:1901564 GO:1901566 GO:1901576 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 ko04216 map04136 map04138 map04140 map04216

Pfam Domains

Protein Families

ATG7_N ThiF

Protein Analysis

134

Amino Acids

15.22

Weight (kDa)

9.81

Isoelectric Point (pI)

51.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017787)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0132441
rosa_laevigata	RLG00000021058
rosa_roxburghii	Rroxscaffold_1G00020600 Rroxscaffold_2G00113150 Rroxscaffold_3G00238980 Rroxscaffold_4G00293780 Rroxscaffold_6G00420930 Rroxscaffold_7G00201450
rosa_samantha	Rh1BG080500 Rh2BG245100 Rh2CG290600 Rh5AG029400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	94
AciI	CCGC	1 cut(s)	109
AfiI	CCNNNNNNNGG	1 cut(s)	269
AgsI	TTSAA	1 cut(s)	11
AhlI	ACTAGT	1 cut(s)	194
AjnI	CCWGG	1 cut(s)	148
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
AoxI	GGCC	1 cut(s)	271
ApeKI	GCWGC	4 cut(s)	26, 29, 302, 305
AspS9I	GGNCC	1 cut(s)	271
BbvI	GCAGC	4 cut(s)	13, 41, 289, 317
BciT130I	CCWGG	1 cut(s)	150
BcuI	ACTAGT	1 cut(s)	194
BfaI	CTAG	2 cut(s)	180, 195
BfmI	CTRYAG	2 cut(s)	27, 303
BglII	AGATCT	1 cut(s)	83
BisI	GCNGC	4 cut(s)	27, 30, 303, 306
BlsI	GCNGC	4 cut(s)	28, 31, 304, 307
Bme1390I	CCNGG	1 cut(s)	150
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	1 cut(s)	238
BmrFI	CCNGG	1 cut(s)	150
BmsI	GCATC	1 cut(s)	249
BsaJI	CCNNGG	1 cut(s)	232
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
Bse1I	ACTGG	1 cut(s)	102
BseBI	CCWGG	1 cut(s)	150
BseDI	CCNNGG	1 cut(s)	232
BseLI	CCNNNNNNNGG	1 cut(s)	269
BseMII	CTCAG	2 cut(s)	256, 294
BseNI	ACTGG	1 cut(s)	102
BseRI	GAGGAG	1 cut(s)	268
BseXI	GCAGC	4 cut(s)	13, 41, 289, 317
BshFI	GGCC	1 cut(s)	273
BslI	CCNNNNNNNGG	1 cut(s)	269
BsnI	GGCC	1 cut(s)	273
Bsp143I	GATC	1 cut(s)	83
BspACI	CCGC	1 cut(s)	109
BspANI	GGCC	1 cut(s)	273
BspCNI	CTCAG	2 cut(s)	255, 293
BspLI	GGNNCC	1 cut(s)	238
BspMAI	CTGCAG	2 cut(s)	31, 307
BsrI	ACTGG	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	232
BssMI	GATC	1 cut(s)	83
BssNAI	GTATAC	1 cut(s)	95
Bst1107I	GTATAC	1 cut(s)	95
Bst2UI	CCWGG	1 cut(s)	150
Bst4CI	ACNGT	4 cut(s)	40, 249, 287, 353
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstC8I	GCNNGC	2 cut(s)	155, 317
BstDEI	CTNAG	2 cut(s)	242, 280
BstDSI	CCRYGG	1 cut(s)	232
BstKTI	GATC	1 cut(s)	86
BstMBI	GATC	1 cut(s)	83
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstNI	CCWGG	1 cut(s)	150
BstSCI	CCNGG	1 cut(s)	148
BstSFI	CTRYAG	2 cut(s)	27, 303
BstV1I	GCAGC	4 cut(s)	13, 41, 289, 317
BstX2I	RGATCY	1 cut(s)	83
BstYI	RGATCY	1 cut(s)	83
BstZ17I	GTATAC	1 cut(s)	95
BsuRI	GGCC	1 cut(s)	273
BtgI	CCRYGG	1 cut(s)	232
BtsIMutI	CAGTG	1 cut(s)	45
Cac8I	GCNNGC	2 cut(s)	155, 317
Cfr13I	GGNCC	1 cut(s)	271
CviAII	CATG	1 cut(s)	68
CviJI	RGCY	4 cut(s)	26, 32, 60, 273
CviKI_1	RGCY	4 cut(s)	26, 32, 60, 273
DdeI	CTNAG	2 cut(s)	242, 280
DpnI	GATC	1 cut(s)	85
DpnII	GATC	1 cut(s)	83
Eco32I	GATATC	1 cut(s)	366
EcoRII	CCWGG	1 cut(s)	148
EcoRV	GATATC	1 cut(s)	366
FaeI	CATG	1 cut(s)	71
FatI	CATG	1 cut(s)	67
FblI	GTMKAC	1 cut(s)	94
Fnu4HI	GCNGC	4 cut(s)	27, 30, 303, 306
Fsp4HI	GCNGC	4 cut(s)	27, 30, 303, 306
FspBI	CTAG	2 cut(s)	180, 195
GluI	GCNGC	4 cut(s)	27, 30, 303, 306
HaeIII	GGCC	1 cut(s)	273
Hin1II	CATG	1 cut(s)	71
Hpy166II	GTNNAC	1 cut(s)	95
Hpy188I	TCNGA	6 cut(s)	106, 128, 245, 256, 283, 370
Hpy188III	TCNNGA	1 cut(s)	361
Hpy8I	GTNNAC	1 cut(s)	95
HpyCH4III	ACNGT	4 cut(s)	40, 249, 287, 353
HpyCH4IV	ACGT	1 cut(s)	372
HpyCH4V	TGCA	4 cut(s)	29, 173, 293, 305
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpyF3I	CTNAG	2 cut(s)	242, 280
HpySE526I	ACGT	1 cut(s)	372
Hsp92II	CATG	1 cut(s)	71
Kzo9I	GATC	1 cut(s)	83
LpnPI	CCDG	6 cut(s)	75, 83, 135, 162, 301, 346
Lsp1109I	GCAGC	4 cut(s)	13, 41, 289, 317
LweI	GCATC	1 cut(s)	249
MaeI	CTAG	2 cut(s)	180, 195
MaeII	ACGT	1 cut(s)	372
MalI	GATC	1 cut(s)	85
MboI	GATC	1 cut(s)	83
MboII	GAAGA	5 cut(s)	16, 23, 55, 78, 349
MflI	RGATCY	1 cut(s)	83
MnlI	CCTC	4 cut(s)	216, 231, 251, 289
MseI	TTAA	1 cut(s)	403
MslI	CAYNNNNRTG	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	150
MvaI	CCWGG	1 cut(s)	150
MwoI	GCNNNNNNNGC	1 cut(s)	299
NdeII	GATC	1 cut(s)	83
NlaIII	CATG	1 cut(s)	71
NlaIV	GGNNCC	1 cut(s)	238
PkrI	GCNGC	4 cut(s)	28, 31, 304, 307
Psp6I	CCWGG	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	148
PspN4I	GGNNCC	1 cut(s)	238
PspPI	GGNCC	1 cut(s)	271
PstI	CTGCAG	2 cut(s)	31, 307
PsuI	RGATCY	1 cut(s)	83
RseI	CAYNNNNRTG	1 cut(s)	38
SaqAI	TTAA	1 cut(s)	403
SatI	GCNGC	4 cut(s)	27, 30, 303, 306
Sau3AI	GATC	1 cut(s)	83
Sau96I	GGNCC	1 cut(s)	271
ScrFI	CCNGG	1 cut(s)	150
SetI	ASST	5 cut(s)	28, 208, 223, 375, 384
SfaNI	GCATC	1 cut(s)	249
SfcI	CTRYAG	2 cut(s)	27, 303
SmiMI	CAYNNNNRTG	1 cut(s)	38
SpeI	ACTAGT	1 cut(s)	194
SsiI	CCGC	1 cut(s)	109
SspI	AATATT	1 cut(s)	337
SspMI	CTAG	2 cut(s)	180, 195
StyD4I	CCNGG	1 cut(s)	148
TaaI	ACNGT	4 cut(s)	40, 249, 287, 353
TaiI	ACGT	1 cut(s)	375
Tru1I	TTAA	1 cut(s)	403
Tru9I	TTAA	1 cut(s)	403
TscAI	CASTG	1 cut(s)	45
TseI	GCWGC	4 cut(s)	26, 29, 302, 305
TspDTI	ATGAA	2 cut(s)	17, 37
TspGWI	ACGGA	1 cut(s)	221
TspRI	CASTG	1 cut(s)	45
XmiI	GTMKAC	1 cut(s)	94
XspI	CTAG	2 cut(s)	180, 195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.