RLG00000022907

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0017825
Physical Location & Seq
Reverse (-)
14882046 .. 14883489
1444 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022907

Sequence Viewer

Length: 678 bp
ATGGGAAATGACAAAATAGTCAAATCCGGACCAAAAAGTCAATTTTTGTCATCGTATACCACTGACTGGTCAACGCCGGCTCAAGCAGAAGCTCTTGTCAGCTTGGTGATAATGGAAGAAGAAAGAAAGGGCGAGATTTTTAGTGGATTAGATGGAACGTATGGCAGTCAGCTGTTAAATATTGACAGAGCAACACTGGTGAGTGGTAGGCAACTGGTTTTCACTTATTCAGTATTTAAAGATGAGTTTGAACAGGATTGGGAGAGTAGCCACTGTTCATCTGGTGCTATTCCTAAGGGGGTTGATACAAGGCGGGAAACAAGGATGGAGTTGACATGCCCTTTGCAAAAGCGTCGGCGCACTGGCGAGTCGCATTCGGGAAACCCGCTGGAGCCACATGGGTCCTGCATGGAGATCTGTTCTATTGGTGAAATTATGGTATCAGAACCGAAACCGAGAGGATTGGATGCGTTGGGAAAGGTGAATCGTTCTCCCCCATATCTGACACCGACGAAGATGGAAGAAGCTCAAGGTATGCCTACCAAGCCTAGTATTGAAAAGGCTGAATCTTCACGTGAGCGGGGTGCTTCTGACATGGACGTGAATGAGATTAATCCTGGGGCTTGTAATAAAAAAATTCAAAGAAAAATGTGCTGTGGAGAAAGTGGGGTCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

226

Amino Acids

24.75

Weight (kDa)

5.77

Isoelectric Point (pI)

51.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 17, 36
AccB7I CCANNNNNTGG 1 cut(s) 66
AccBSI CCGCTC 1 cut(s) 580
AccI GTMKAC 1 cut(s) 56
AccIII TCCGGA 1 cut(s) 26
AciI CCGC 3 cut(s) 313, 386, 580
AcsI RAATTY 1 cut(s) 636
AcvI CACGTG 1 cut(s) 575
AfiI CCNNNNNNNGG 1 cut(s) 66
AgsI TTSAA 3 cut(s) 251, 557, 641
AjiI CACGTC 1 cut(s) 601
AjnI CCWGG 1 cut(s) 616
AluBI AGCT 4 cut(s) 92, 102, 172, 527
AluI AGCT 4 cut(s) 92, 102, 172, 527
Aor13HI TCCGGA 1 cut(s) 26
ApoI RAATTY 1 cut(s) 636
ArsI GACNNNNNNTTYG 2 cut(s) 325, 357
AseI ATTAAT 1 cut(s) 612
AspLEI GCGC 1 cut(s) 360
AspS9I GGNCC 2 cut(s) 29, 402
AsuHPI GGTGA 4 cut(s) 118, 211, 440, 493
AvaII GGWCC 2 cut(s) 29, 402
AxyI CCTNAGG 1 cut(s) 294
BbrPI CACGTG 1 cut(s) 575
BccI CCATC 3 cut(s) 146, 319, 511
BcgI CGANNNNNNTGC 2 cut(s) 335, 369
BciT130I CCWGG 1 cut(s) 618
BfaI CTAG 1 cut(s) 549
BglII AGATCT 1 cut(s) 414
Bme1390I CCNGG 1 cut(s) 618
Bme18I GGWCC 2 cut(s) 29, 402
BmgBI CACGTC 1 cut(s) 601
BmgT120I GGNCC 2 cut(s) 29, 402
BmiI GGNNCC 2 cut(s) 393, 403
BmrFI CCNGG 1 cut(s) 618
BmsI GCATC 1 cut(s) 457
BpmI CTGGAG 1 cut(s) 410
BpuEI CTTGAG 2 cut(s) 66, 513
BsaAI YACGTR 1 cut(s) 575
BsaJI CCNNGG 1 cut(s) 617
BsaWI WCCGGW 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 66
Bse118I RCCGGY 1 cut(s) 76
Bse1I ACTGG 4 cut(s) 71, 201, 219, 367
Bse21I CCTNAGG 1 cut(s) 294
BseAI TCCGGA 1 cut(s) 26
BseBI CCWGG 1 cut(s) 618
BseDI CCNNGG 1 cut(s) 617
BseGI GGATG 2 cut(s) 330, 472
BseLI CCNNNNNNNGG 1 cut(s) 66
BseNI ACTGG 4 cut(s) 71, 201, 219, 367
BsiSI CCGG 2 cut(s) 27, 77
BslI CCNNNNNNNGG 1 cut(s) 66
BsmI GAATGC 1 cut(s) 373
Bsp13I TCCGGA 1 cut(s) 26
Bsp143I GATC 1 cut(s) 414
BspACI CCGC 3 cut(s) 313, 386, 580
BspEI TCCGGA 1 cut(s) 26
BspLI GGNNCC 2 cut(s) 393, 403
BsrBI CCGCTC 1 cut(s) 580
BsrFI RCCGGY 1 cut(s) 76
BsrI ACTGG 4 cut(s) 71, 201, 219, 367
BssAI RCCGGY 1 cut(s) 76
BssECI CCNNGG 1 cut(s) 617
BssMI GATC 1 cut(s) 414
BssNAI GTATAC 1 cut(s) 57
Bst1107I GTATAC 1 cut(s) 57
Bst2UI CCWGG 1 cut(s) 618
Bst4CI ACNGT 1 cut(s) 275
BstBAI YACGTR 1 cut(s) 575
BstC8I GCNNGC 1 cut(s) 78
BstDEI CTNAG 1 cut(s) 294
BstF5I GGATG 2 cut(s) 330, 472
BstHHI GCGC 1 cut(s) 360
BstKTI GATC 1 cut(s) 417
BstMBI GATC 1 cut(s) 414
BstMWI GCNNNNNNNGC 1 cut(s) 544
BstNI CCWGG 1 cut(s) 618
BstNSI RCATGY 1 cut(s) 339
BstSCI CCNGG 1 cut(s) 616
BstX2I RGATCY 1 cut(s) 414
BstYI RGATCY 1 cut(s) 414
BstZ17I GTATAC 1 cut(s) 57
Bsu36I CCTNAGG 1 cut(s) 294
BtrI CACGTC 1 cut(s) 601
BtsCI GGATG 2 cut(s) 330, 472
BtsIMutI CAGTG 4 cut(s) 60, 194, 271, 360
Cac8I GCNNGC 1 cut(s) 78
CfoI GCGC 1 cut(s) 360
Cfr10I RCCGGY 1 cut(s) 76
Cfr13I GGNCC 2 cut(s) 29, 402
CseI GACGC 1 cut(s) 341
CviAII CATG 4 cut(s) 336, 398, 409, 595
DdeI CTNAG 1 cut(s) 294
DpnI GATC 1 cut(s) 416
DpnII GATC 1 cut(s) 414
DraI TTTAAA 1 cut(s) 238
DrdI GACNNNNNNGTC 2 cut(s) 17, 36
DseDI GACNNNNNNGTC 2 cut(s) 17, 36
Eco47I GGWCC 2 cut(s) 29, 402
Eco72I CACGTG 1 cut(s) 575
Eco81I CCTNAGG 1 cut(s) 294
EcoO109I RGGNCCY 1 cut(s) 402
EcoRII CCWGG 1 cut(s) 616
FaeI CATG 4 cut(s) 339, 401, 412, 598
FaiI YATR 9 cut(s) 57, 162, 337, 399, 410, 437, 499, 536, 596
FatI CATG 4 cut(s) 335, 397, 408, 594
FauI CCCGC 3 cut(s) 306, 393, 573
FblI GTMKAC 1 cut(s) 56
FokI GGATG 2 cut(s) 337, 479
FspBI CTAG 1 cut(s) 549
GlaI GCGC 1 cut(s) 359
GsuI CTGGAG 1 cut(s) 410
HapII CCGG 2 cut(s) 27, 77
HgaI GACGC 1 cut(s) 341
HhaI GCGC 1 cut(s) 360
Hin1II CATG 4 cut(s) 339, 401, 412, 598
Hin6I GCGC 1 cut(s) 358
HinP1I GCGC 1 cut(s) 358
HincII GTYRAC 2 cut(s) 72, 333
HindII GTYRAC 2 cut(s) 72, 333
HinfI GANTC 3 cut(s) 368, 484, 566
HpaII CCGG 2 cut(s) 27, 77
HphI GGTGA 4 cut(s) 118, 211, 440, 493
Hpy166II GTNNAC 3 cut(s) 57, 72, 333
Hpy188I TCNGA 3 cut(s) 445, 504, 592
Hpy188III TCNNGA 2 cut(s) 27, 378
Hpy8I GTNNAC 3 cut(s) 57, 72, 333
Hpy99I CGWCG 2 cut(s) 357, 514
HpyCH4III ACNGT 1 cut(s) 275
HpyCH4IV ACGT 3 cut(s) 158, 574, 600
HpyCH4V TGCA 2 cut(s) 346, 408
HpyF10VI GCNNNNNNNGC 1 cut(s) 544
HpyF3I CTNAG 1 cut(s) 294
HpySE526I ACGT 3 cut(s) 158, 574, 600
Hsp92II CATG 4 cut(s) 339, 401, 412, 598
HspAI GCGC 1 cut(s) 358
Kpn2I TCCGGA 1 cut(s) 26
KroI GCCGGC 1 cut(s) 76
KroNI GCCGGC 1 cut(s) 78
Kzo9I GATC 1 cut(s) 414
LmnI GCTCC 1 cut(s) 391
LweI GCATC 1 cut(s) 457
MaeI CTAG 1 cut(s) 549
MaeII ACGT 3 cut(s) 158, 574, 600
MalI GATC 1 cut(s) 416
MbiI CCGCTC 1 cut(s) 580
MboI GATC 1 cut(s) 414
MboII GAAGA 5 cut(s) 128, 131, 526, 533, 561
MflI RGATCY 1 cut(s) 414
MluCI AATT 3 cut(s) 41, 432, 636
MlyI GAGTC 1 cut(s) 377
MnlI CCTC 1 cut(s) 452
MroI TCCGGA 1 cut(s) 26
MroNI GCCGGC 1 cut(s) 76
MseI TTAA 4 cut(s) 176, 237, 612, 676
MslI CAYNNNNRTG 1 cut(s) 599
MspA1I CMGCKG 2 cut(s) 172, 388
MspI CCGG 2 cut(s) 27, 77
MspR9I CCNGG 1 cut(s) 618
Mva1269I GAATGC 1 cut(s) 373
MvaI CCWGG 1 cut(s) 618
MwoI GCNNNNNNNGC 1 cut(s) 544
NaeI GCCGGC 1 cut(s) 78
NdeII GATC 1 cut(s) 414
NgoMIV GCCGGC 1 cut(s) 76
NlaIII CATG 4 cut(s) 339, 401, 412, 598
NlaIV GGNNCC 2 cut(s) 393, 403
NspI RCATGY 1 cut(s) 339
PctI GAATGC 1 cut(s) 373
PdiI GCCGGC 1 cut(s) 78
PfeI GAWTC 2 cut(s) 484, 566
PflMI CCANNNNNTGG 1 cut(s) 66
PleI GAGTC 1 cut(s) 376
PmaCI CACGTG 1 cut(s) 575
PmlI CACGTG 1 cut(s) 575
PpsI GAGTC 1 cut(s) 376
Ppu21I YACGTR 1 cut(s) 575
PpuMI RGGWCCY 1 cut(s) 402
PshBI ATTAAT 1 cut(s) 612
Psp5II RGGWCCY 1 cut(s) 402
Psp6I CCWGG 1 cut(s) 616
PspCI CACGTG 1 cut(s) 575
PspGI CCWGG 1 cut(s) 616
PspN4I GGNNCC 2 cut(s) 393, 403
PspPI GGNCC 2 cut(s) 29, 402
PspPPI RGGWCCY 1 cut(s) 402
PsrI GAACNNNNNNTAC 2 cut(s) 259, 291
PsuI RGATCY 1 cut(s) 414
PvuII CAGCTG 1 cut(s) 172
RseI CAYNNNNRTG 1 cut(s) 599
SaqAI TTAA 4 cut(s) 176, 237, 612, 676
Sau3AI GATC 1 cut(s) 414
Sau96I GGNCC 2 cut(s) 29, 402
SchI GAGTC 1 cut(s) 377
ScrFI CCNGG 1 cut(s) 618
SetI ASST 9 cut(s) 94, 104, 161, 174, 483, 529, 535, 577, 603
SfaNI GCATC 1 cut(s) 457
SinI GGWCC 2 cut(s) 29, 402
SmiMI CAYNNNNRTG 1 cut(s) 599
SmlI CTYRAG 2 cut(s) 81, 528
SmoI CTYRAG 2 cut(s) 81, 528
Sse9I AATT 3 cut(s) 41, 432, 636
SsiI CCGC 3 cut(s) 313, 386, 580
SspI AATATT 1 cut(s) 181
SspMI CTAG 1 cut(s) 549
StyD4I CCNGG 1 cut(s) 616
TaaI ACNGT 1 cut(s) 275
TaiI ACGT 3 cut(s) 161, 577, 603
TasI AATT 3 cut(s) 41, 432, 636
TfiI GAWTC 2 cut(s) 484, 566
Tru1I TTAA 4 cut(s) 176, 237, 612, 676
Tru9I TTAA 4 cut(s) 176, 237, 612, 676
TscAI CASTG 4 cut(s) 67, 201, 278, 367
TspDTI ATGAA 1 cut(s) 267
TspRI CASTG 4 cut(s) 67, 201, 278, 367
Van91I CCANNNNNTGG 1 cut(s) 66
VpaK11BI GGWCC 2 cut(s) 29, 402
VspI ATTAAT 1 cut(s) 612
XapI RAATTY 1 cut(s) 636
XceI RCATGY 1 cut(s) 339
XcmI CCANNNNNNNNNTGG 1 cut(s) 278
XmiI GTMKAC 1 cut(s) 56
XspI CTAG 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.