Rh3AG013300

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
Physical Location & Seq
Reverse (-)
809701 .. 810885
1185 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG013300.1

Sequence Viewer

Length: 285 bp
ATGTTTGTTTCAGAGCTGGGGTGTATTGAATTTCAAAGCCAAAAATGGGAAGAGAGGCTCCATAGCAAACGTCGCAGCAGCAAATGTCGTTCACGGTGGAGCAATTGGTCGCGGTCAATCGTTAGAACCCTGATATCCTCCCCGATTTCGAAAGCTACGTCAACGGGAATTGAAGTGATATGGTTTTACTACGATCTCATCTTGGAATGTACTCAGAGTAAGAATTCTGTGGTAACTGGGAGTGAAGCTGTAGATGAGATATGCAAGTTACCCTCGAAAGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.81

Weight (kDa)

9.05

Isoelectric Point (pI)

94.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 112
AciI CCGC 1 cut(s) 112
AcsI RAATTY 2 cut(s) 29, 223
AfaI GTAC 1 cut(s) 211
AfiI CCNNNNNNNGG 3 cut(s) 46, 278, 279
AgsI TTSAA 3 cut(s) 29, 35, 173
AluBI AGCT 3 cut(s) 16, 155, 248
AluI AGCT 3 cut(s) 16, 155, 248
ApeKI GCWGC 2 cut(s) 75, 78
ApoI RAATTY 2 cut(s) 29, 223
ArsI GACNNNNNNTTYG 2 cut(s) 143, 175
AsuII TTCGAA 1 cut(s) 149
BbvI GCAGC 2 cut(s) 87, 90
BfmI CTRYAG 1 cut(s) 249
BisI GCNGC 2 cut(s) 76, 79
BlsI GCNGC 2 cut(s) 77, 80
BmiI GGNNCC 1 cut(s) 59
BmrI ACTGGG 1 cut(s) 246
BmuI ACTGGG 1 cut(s) 246
Bpu14I TTCGAA 1 cut(s) 149
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 278, 279
Bse1I ACTGG 1 cut(s) 241
BseLI CCNNNNNNNGG 3 cut(s) 46, 278, 279
BseMII CTCAG 1 cut(s) 227
BseNI ACTGG 1 cut(s) 241
BseXI GCAGC 2 cut(s) 87, 90
BseYI CCCAGC 1 cut(s) 16
Bsh1236I CGCG 1 cut(s) 112
BslI CCNNNNNNNGG 3 cut(s) 46, 278, 279
Bsp119I TTCGAA 1 cut(s) 149
Bsp143I GATC 1 cut(s) 193
BspACI CCGC 1 cut(s) 112
BspCNI CTCAG 1 cut(s) 226
BspFNI CGCG 1 cut(s) 112
BspLI GGNNCC 1 cut(s) 59
BspT104I TTCGAA 1 cut(s) 149
BsrI ACTGG 1 cut(s) 241
BssMI GATC 1 cut(s) 193
Bst4CI ACNGT 1 cut(s) 96
Bst6I CTCTTC 1 cut(s) 45
BstBI TTCGAA 1 cut(s) 149
BstDEI CTNAG 1 cut(s) 213
BstFNI CGCG 1 cut(s) 112
BstKTI GATC 1 cut(s) 196
BstMBI GATC 1 cut(s) 193
BstMWI GCNNNNNNNGC 1 cut(s) 72
BstSFI CTRYAG 1 cut(s) 249
BstUI CGCG 1 cut(s) 112
BstV1I GCAGC 2 cut(s) 87, 90
Csp6I GTAC 1 cut(s) 210
CviJI RGCY 5 cut(s) 16, 39, 58, 155, 248
CviKI_1 RGCY 5 cut(s) 16, 39, 58, 155, 248
CviQI GTAC 1 cut(s) 210
DdeI CTNAG 1 cut(s) 213
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
Eco32I GATATC 1 cut(s) 135
EcoRI GAATTC 1 cut(s) 223
EcoRV GATATC 1 cut(s) 135
FaiI YATR 3 cut(s) 63, 181, 262
Fnu4HI GCNGC 2 cut(s) 76, 79
Fsp4HI GCNGC 2 cut(s) 76, 79
GluI GCNGC 2 cut(s) 76, 79
GsaI CCCAGC 1 cut(s) 20
HincII GTYRAC 1 cut(s) 162
HindII GTYRAC 1 cut(s) 162
Hpy166II GTNNAC 2 cut(s) 92, 162
Hpy188I TCNGA 2 cut(s) 13, 216
Hpy8I GTNNAC 2 cut(s) 92, 162
Hpy99I CGWCG 1 cut(s) 75
HpyCH4III ACNGT 1 cut(s) 96
HpyCH4IV ACGT 2 cut(s) 70, 158
HpyCH4V TGCA 1 cut(s) 264
HpyF10VI GCNNNNNNNGC 1 cut(s) 72
HpyF3I CTNAG 1 cut(s) 213
HpySE526I ACGT 2 cut(s) 70, 158
Kzo9I GATC 1 cut(s) 193
LmnI GCTCC 2 cut(s) 63, 99
LpnPI CCDG 3 cut(s) 2, 143, 222
Lsp1109I GCAGC 2 cut(s) 87, 90
MaeII ACGT 2 cut(s) 70, 158
MaeIII GTNAC 2 cut(s) 232, 267
MalI GATC 1 cut(s) 195
MboI GATC 1 cut(s) 193
MboII GAAGA 1 cut(s) 62
MfeI CAATTG 1 cut(s) 103
MluCI AATT 4 cut(s) 29, 103, 168, 223
MnlI CCTC 3 cut(s) 48, 148, 283
MunI CAATTG 1 cut(s) 103
MvnI CGCG 1 cut(s) 112
MwoI GCNNNNNNNGC 1 cut(s) 72
NdeII GATC 1 cut(s) 193
NlaIV GGNNCC 1 cut(s) 59
NspV TTCGAA 1 cut(s) 149
PcsI WCGNNNNNNNCGW 1 cut(s) 155
PkrI GCNGC 2 cut(s) 77, 80
PspFI CCCAGC 1 cut(s) 16
PspN4I GGNNCC 1 cut(s) 59
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
SatI GCNGC 2 cut(s) 76, 79
Sau3AI GATC 1 cut(s) 193
SetI ASST 5 cut(s) 18, 73, 157, 161, 250
SfcI CTRYAG 1 cut(s) 249
SfuI TTCGAA 1 cut(s) 149
SgeI CNNG 9 cut(s) 29, 105, 123, 142, 154, 177, 214, 249, 277
Sse9I AATT 4 cut(s) 29, 103, 168, 223
SsiI CCGC 1 cut(s) 112
TaaI ACNGT 1 cut(s) 96
TaiI ACGT 2 cut(s) 73, 161
TaqI TCGA 2 cut(s) 149, 275
TasI AATT 4 cut(s) 29, 103, 168, 223
TatI WGTACW 1 cut(s) 209
TseI GCWGC 2 cut(s) 75, 78
XapI RAATTY 2 cut(s) 29, 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.