Rh2DG345100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0017825
Physical Location & Seq
Forward (+)
47316301 .. 47318090
1790 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG345100.1

Sequence Viewer

Length: 384 bp
ATGTTTGTTTCACAGCTGGGGTGTATTGAATTTCAAAGCCAAAAATGGGAAGAGAGGCTCCATAGCAAACGTCGCAGCAGCAAGTGTCGTTCACGGTGGAGCAATTGGTCGCGGTCAATCGCTAGAACCCTGATATCCTCCCCGATTTCGAAAGCTACGTCAACGGGAATTGAAGTGATATGGTTTTACTACGATCTCATCTTGAATGTACTCAGACATGAATATACTCAGAGTTGCCTAACGCATTTGCTCAAGTGGCTATTGAATTTTAAGAACAAGGCATTGTTAGAGAGGAAAATGGAGCTGCTTGTCATAGAGGAAAAACAAGCACTCCATGCAGTGAAGGCTTTCCCCAAAGATGACCATCTAAGCCCTGGAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.96

Weight (kDa)

9.67

Isoelectric Point (pI)

86.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 112
AciI CCGC 1 cut(s) 112
AcsI RAATTY 2 cut(s) 29, 265
AfaI GTAC 1 cut(s) 210
AfiI CCNNNNNNNGG 1 cut(s) 46
AgsI TTSAA 5 cut(s) 29, 35, 173, 205, 265
AjnI CCWGG 1 cut(s) 373
AluBI AGCT 4 cut(s) 16, 155, 304, 381
AluI AGCT 4 cut(s) 16, 155, 304, 381
ApeKI GCWGC 3 cut(s) 75, 78, 304
ApoI RAATTY 2 cut(s) 29, 265
ArsI GACNNNNNNTTYG 2 cut(s) 143, 175
Asp700I GAANNNNTTC 1 cut(s) 347
AsuII TTCGAA 1 cut(s) 149
BbvI GCAGC 3 cut(s) 87, 90, 291
BccI CCATC 1 cut(s) 372
BciT130I CCWGG 1 cut(s) 375
BfaI CTAG 1 cut(s) 123
BisI GCNGC 3 cut(s) 76, 79, 305
BlsI GCNGC 3 cut(s) 77, 80, 306
Bme1390I CCNGG 1 cut(s) 375
BmiI GGNNCC 1 cut(s) 59
BmrFI CCNGG 1 cut(s) 375
Bpu14I TTCGAA 1 cut(s) 149
BpuEI CTTGAG 1 cut(s) 236
BsaBI GATNNNNATC 1 cut(s) 363
BsaJI CCNNGG 1 cut(s) 373
BsaXI ACNNNNNCTCC 2 cut(s) 315, 345
Bsc4I CCNNNNNNNGG 1 cut(s) 46
Bse8I GATNNNNATC 1 cut(s) 363
BseBI CCWGG 1 cut(s) 375
BseDI CCNNGG 1 cut(s) 373
BseJI GATNNNNATC 1 cut(s) 363
BseLI CCNNNNNNNGG 1 cut(s) 46
BseMII CTCAG 2 cut(s) 226, 242
BseXI GCAGC 3 cut(s) 87, 90, 291
BseYI CCCAGC 1 cut(s) 16
Bsh1236I CGCG 1 cut(s) 112
BslI CCNNNNNNNGG 1 cut(s) 46
Bsp119I TTCGAA 1 cut(s) 149
Bsp143I GATC 1 cut(s) 193
BspACI CCGC 1 cut(s) 112
BspCNI CTCAG 2 cut(s) 225, 241
BspFNI CGCG 1 cut(s) 112
BspLI GGNNCC 1 cut(s) 59
BspT104I TTCGAA 1 cut(s) 149
BssECI CCNNGG 1 cut(s) 373
BssMI GATC 1 cut(s) 193
Bst2UI CCWGG 1 cut(s) 375
Bst4CI ACNGT 1 cut(s) 96
Bst6I CTCTTC 1 cut(s) 45
BstAPI GCANNNNNTGC 1 cut(s) 335
BstBI TTCGAA 1 cut(s) 149
BstDEI CTNAG 3 cut(s) 212, 228, 368
BstFNI CGCG 1 cut(s) 112
BstKTI GATC 1 cut(s) 196
BstMBI GATC 1 cut(s) 193
BstMWI GCNNNNNNNGC 5 cut(s) 72, 256, 335, 344, 378
BstNI CCWGG 1 cut(s) 375
BstSCI CCNGG 1 cut(s) 373
BstUI CGCG 1 cut(s) 112
BstV1I GCAGC 3 cut(s) 87, 90, 291
BtsI GCAGTG 1 cut(s) 345
BtsIMutI CAGTG 1 cut(s) 345
Csp6I GTAC 1 cut(s) 209
CviAII CATG 2 cut(s) 218, 335
CviJI RGCY 9 cut(s) 16, 39, 58, 155, 259, 304, 347, 372, 381
CviKI_1 RGCY 9 cut(s) 16, 39, 58, 155, 259, 304, 347, 372, 381
CviQI GTAC 1 cut(s) 209
DdeI CTNAG 3 cut(s) 212, 228, 368
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
Eco32I GATATC 1 cut(s) 135
EcoRII CCWGG 1 cut(s) 373
EcoRV GATATC 1 cut(s) 135
FaeI CATG 2 cut(s) 221, 338
FaiI YATR 6 cut(s) 63, 181, 219, 225, 314, 336
FatI CATG 2 cut(s) 217, 334
Fnu4HI GCNGC 3 cut(s) 76, 79, 305
Fsp4HI GCNGC 3 cut(s) 76, 79, 305
FspBI CTAG 1 cut(s) 123
GluI GCNGC 3 cut(s) 76, 79, 305
GsaI CCCAGC 1 cut(s) 20
Hin1II CATG 2 cut(s) 221, 338
HincII GTYRAC 1 cut(s) 162
HindII GTYRAC 1 cut(s) 162
Hpy166II GTNNAC 2 cut(s) 92, 162
Hpy188I TCNGA 2 cut(s) 215, 231
Hpy188III TCNNGA 1 cut(s) 202
Hpy8I GTNNAC 2 cut(s) 92, 162
Hpy99I CGWCG 1 cut(s) 75
HpyAV CCTTC 1 cut(s) 337
HpyCH4III ACNGT 1 cut(s) 96
HpyCH4IV ACGT 2 cut(s) 70, 158
HpyCH4V TGCA 1 cut(s) 338
HpyF10VI GCNNNNNNNGC 5 cut(s) 72, 256, 335, 344, 378
HpyF3I CTNAG 3 cut(s) 212, 228, 368
HpySE526I ACGT 2 cut(s) 70, 158
Hsp92II CATG 2 cut(s) 221, 338
Kzo9I GATC 1 cut(s) 193
LmnI GCTCC 3 cut(s) 63, 99, 301
LpnPI CCDG 3 cut(s) 2, 143, 360
Lsp1109I GCAGC 3 cut(s) 87, 90, 291
MaeI CTAG 1 cut(s) 123
MaeII ACGT 2 cut(s) 70, 158
MalI GATC 1 cut(s) 195
MboI GATC 1 cut(s) 193
MboII GAAGA 1 cut(s) 62
MfeI CAATTG 1 cut(s) 103
MluCI AATT 4 cut(s) 29, 103, 168, 265
MnlI CCTC 4 cut(s) 48, 148, 285, 310
MroXI GAANNNNTTC 1 cut(s) 347
MseI TTAA 1 cut(s) 270
MspA1I CMGCKG 1 cut(s) 16
MspR9I CCNGG 1 cut(s) 375
MunI CAATTG 1 cut(s) 103
MvaI CCWGG 1 cut(s) 375
MvnI CGCG 1 cut(s) 112
MwoI GCNNNNNNNGC 5 cut(s) 72, 256, 335, 344, 378
NdeII GATC 1 cut(s) 193
NlaIII CATG 2 cut(s) 221, 338
NlaIV GGNNCC 1 cut(s) 59
NspV TTCGAA 1 cut(s) 149
PcsI WCGNNNNNNNCGW 1 cut(s) 155
PdmI GAANNNNTTC 1 cut(s) 347
PkrI GCNGC 3 cut(s) 77, 80, 306
Psp6I CCWGG 1 cut(s) 373
PspFI CCCAGC 1 cut(s) 16
PspGI CCWGG 1 cut(s) 373
PspN4I GGNNCC 1 cut(s) 59
PvuII CAGCTG 1 cut(s) 16
RsaI GTAC 1 cut(s) 210
RsaNI GTAC 1 cut(s) 209
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 3 cut(s) 76, 79, 305
Sau3AI GATC 1 cut(s) 193
ScrFI CCNGG 1 cut(s) 375
SetI ASST 6 cut(s) 18, 73, 157, 161, 306, 383
SfuI TTCGAA 1 cut(s) 149
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
Sse9I AATT 4 cut(s) 29, 103, 168, 265
SsiI CCGC 1 cut(s) 112
SspMI CTAG 1 cut(s) 123
StyD4I CCNGG 1 cut(s) 373
TaaI ACNGT 1 cut(s) 96
TaiI ACGT 2 cut(s) 73, 161
TaqI TCGA 1 cut(s) 149
TasI AATT 4 cut(s) 29, 103, 168, 265
TatI WGTACW 1 cut(s) 208
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 1 cut(s) 345
TseI GCWGC 3 cut(s) 75, 78, 304
TspDTI ATGAA 1 cut(s) 234
TspRI CASTG 1 cut(s) 345
XapI RAATTY 2 cut(s) 29, 265
XcmI CCANNNNNNNNNTGG 1 cut(s) 371
XmnI GAANNNNTTC 1 cut(s) 347
XspI CTAG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.