Rroxscaffold_7G00186540

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
25876218 .. 25876978
761 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00186540.1

Sequence Viewer

Length: 225 bp
ATGTACTCGAGTTGCCTTACGCATTTGCTCGGGTGGCTATTGAATTTTAAGAACAAGGCATTGTTAGAGAGGAAAAGGGAGCTGCTTGTCATAGAGGAAAAACGAGCACTCCATGCGGTGAAGGCTTTCCCCAAAGATGACCCATCTAAGCCCCGGAAGCTTACTTGCTTCCCATATATGGAACTATTGTTACATTTATACAAGTCCAAATGTTGTTCATCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

8.7

Weight (kDa)

9.48

Isoelectric Point (pI)

57.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 116
AcsI RAATTY 1 cut(s) 43
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 178
AgsI TTSAA 1 cut(s) 43
AluBI AGCT 2 cut(s) 82, 160
AluI AGCT 2 cut(s) 82, 160
Alw21I GWGCWC 1 cut(s) 109
Ama87I CYCGRG 2 cut(s) 7, 29
ApeKI GCWGC 1 cut(s) 82
ApoI RAATTY 1 cut(s) 43
Asp700I GAANNNNTTC 1 cut(s) 125
AsuC2I CCSGG 1 cut(s) 154
AsuHPI GGTGA 1 cut(s) 130
AvaI CYCGRG 2 cut(s) 7, 29
Bbv12I GWGCWC 1 cut(s) 109
BbvI GCAGC 1 cut(s) 69
BccI CCATC 1 cut(s) 151
BcnI CCSGG 1 cut(s) 154
BisI GCNGC 1 cut(s) 83
BlsI GCNGC 1 cut(s) 84
Bme1390I CCNGG 1 cut(s) 154
BmeT110I CYCGRG 2 cut(s) 7, 29
BmrFI CCNGG 1 cut(s) 154
BpuMI CCSGG 1 cut(s) 154
BsaJI CCNNGG 1 cut(s) 152
BsaXI ACNNNNNCTCC 2 cut(s) 93, 123
Bsc4I CCNNNNNNNGG 1 cut(s) 178
BseDI CCNNGG 1 cut(s) 152
BseLI CCNNNNNNNGG 1 cut(s) 178
BseXI GCAGC 1 cut(s) 69
BsiHKAI GWGCWC 1 cut(s) 109
BsiHKCI CYCGRG 2 cut(s) 7, 29
BsiSI CCGG 1 cut(s) 154
BslI CCNNNNNNNGG 1 cut(s) 178
BsoBI CYCGRG 2 cut(s) 7, 29
Bsp1286I GDGCHC 1 cut(s) 109
BspACI CCGC 1 cut(s) 116
BssECI CCNNGG 1 cut(s) 152
BstAPI GCANNNNNTGC 1 cut(s) 113
BstDEI CTNAG 1 cut(s) 147
BstMWI GCNNNNNNNGC 4 cut(s) 34, 113, 122, 157
BstSCI CCNGG 1 cut(s) 152
BstV1I GCAGC 1 cut(s) 69
Csp6I GTAC 1 cut(s) 4
CviAII CATG 1 cut(s) 113
CviJI RGCY 5 cut(s) 37, 82, 125, 151, 160
CviKI_1 RGCY 5 cut(s) 37, 82, 125, 151, 160
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 1 cut(s) 147
Eco88I CYCGRG 2 cut(s) 7, 29
FaeI CATG 1 cut(s) 116
FaiI YATR 6 cut(s) 92, 114, 175, 177, 179, 199
FatI CATG 1 cut(s) 112
Fnu4HI GCNGC 1 cut(s) 83
Fsp4HI GCNGC 1 cut(s) 83
GluI GCNGC 1 cut(s) 83
HapII CCGG 1 cut(s) 154
Hin1II CATG 1 cut(s) 116
HindIII AAGCTT 1 cut(s) 158
HpaII CCGG 1 cut(s) 154
HphI GGTGA 1 cut(s) 130
HpyAV CCTTC 1 cut(s) 115
HpyF10VI GCNNNNNNNGC 4 cut(s) 34, 113, 122, 157
HpyF3I CTNAG 1 cut(s) 147
Hsp92II CATG 1 cut(s) 116
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 1 cut(s) 167
Lsp1109I GCAGC 1 cut(s) 69
MaeIII GTNAC 1 cut(s) 189
MhlI GDGCHC 1 cut(s) 109
MluCI AATT 1 cut(s) 43
MnlI CCTC 2 cut(s) 63, 88
MroXI GAANNNNTTC 1 cut(s) 125
MseI TTAA 1 cut(s) 48
MspI CCGG 1 cut(s) 154
MspR9I CCNGG 1 cut(s) 154
MwoI GCNNNNNNNGC 4 cut(s) 34, 113, 122, 157
NciI CCSGG 1 cut(s) 154
NlaIII CATG 1 cut(s) 116
PaeR7I CTCGAG 1 cut(s) 7
PdmI GAANNNNTTC 1 cut(s) 125
PkrI GCNGC 1 cut(s) 84
PspXI VCTCGAGB 1 cut(s) 7
PsrI GAACNNNNNNTAC 2 cut(s) 174, 206
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 1 cut(s) 83
ScrFI CCNGG 1 cut(s) 154
SduI GDGCHC 1 cut(s) 109
SetI ASST 2 cut(s) 84, 162
Sfr274I CTCGAG 1 cut(s) 7
SlaI CTCGAG 1 cut(s) 7
SmlI CTYRAG 1 cut(s) 7
SmoI CTYRAG 1 cut(s) 7
Sse9I AATT 1 cut(s) 43
SsiI CCGC 1 cut(s) 116
StyD4I CCNGG 1 cut(s) 152
TaqI TCGA 1 cut(s) 8
TasI AATT 1 cut(s) 43
TatI WGTACW 1 cut(s) 3
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TseI GCWGC 1 cut(s) 82
TspDTI ATGAA 1 cut(s) 207
XapI RAATTY 1 cut(s) 43
XhoI CTCGAG 1 cut(s) 7
XmnI GAANNNNTTC 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.