Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001144.1

Orthogroup ID

OG0017825

Physical Location & Seq

Genomic Coordinates Reverse (-)

79682 .. 84783

Gene Structure 5102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001144.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

atgaacaaactatccaatgggatactggagatactgggactgagcctgggagttgggcaggagtacttcaaagagttctacggaggaaacgattcgatcatgaggttgaactactatccaatgtgccaaaacccagatccaacactgggaactgggcctcacagtgatcccacttccttgacaatccttcatcaggatcaagtagggggccttgaagtgtttttcgatgagaagtggcacaccgttactcctgtccttggttctttcgttattaacattggtctctgccctctcagtcttgcgttctatcagacggattggggcgtggacaatccttcactcttctcaggcggcagcgctagcgtggatgatgggtattgggcgatcgacggcgacgcaggtgtggagcaagtggccagtgtccagatcgcggcggcggtatgccgtggattgtatggcgctgggtacttctctgctttgggacgttcggcggagtttgcagcggtggtttcaggctcttcagaatgtactcagagtaagaattcagtggtaactgggagtgaagctgtagatgagatatgcaagttaccctcgaaagggtggctattgaattttaagaacaaggcattgttagagaggaaaagggagctgcttgtcatagaggaaaaacgagcactccatgcagtgaaggctttccccaaagatgacccatctaagccctggaagctgactgcttcccatatatggaactattgttacatttatacaagtccaaatgttgttcatcgtagttttatagctttctttcgaagctattgcatcgcctcatgtactccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010228 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045544 GO:0046394 GO:0048366 GO:0048367 GO:0048572 GO:0048573 GO:0048575 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

279

Amino Acids

30.5

Weight (kDa)

5.52

Isoelectric Point (pI)

39.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017825)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0255211
rosa_laevigata	RLG00000022907
rosa_multiflora	Rmu_sc0001144.1_g000020
rosa_roxburghii	Rroxscaffold_4G00308210 Rroxscaffold_7G00186540
rosa_samantha	Rh2DG345100 Rh2DG346300 Rh3AG013300 Rh3DG013700 Rh4BG154600 Rh5AG168700 Rh6AG135800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	389
Acc36I	ACCTGC	1 cut(s)	389
AccII	CGCG	1 cut(s)	431
AciI	CCGC	6 cut(s)	351, 431, 434, 437, 491, 503
AclWI	GGATC	3 cut(s)	131, 161, 204
AcoI	YGGCCR	1 cut(s)	414
AcsI	RAATTY	2 cut(s)	541, 610
AcuI	CTGAAG	1 cut(s)	504
AfaI	GTAC	4 cut(s)	65, 467, 529, 832
AfeI	AGCGCT	1 cut(s)	358
AfiI	CCNNNNNNNGG	7 cut(s)	146, 193, 257, 430, 596, 597, 744
AgsI	TTSAA	4 cut(s)	70, 109, 215, 610
AjnI	CCWGG	2 cut(s)	45, 719
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	5 cut(s)	566, 649, 727, 800, 813
AluI	AGCT	5 cut(s)	566, 649, 727, 800, 813
Alw21I	GWGCWC	1 cut(s)	676
Alw26I	GTCTC	1 cut(s)	287
AlwI	GGATC	3 cut(s)	131, 161, 204
Aor51HI	AGCGCT	1 cut(s)	358
AoxI	GGCC	3 cut(s)	155, 208, 414
ApeKI	GCWGC	3 cut(s)	354, 500, 649
ApoI	RAATTY	2 cut(s)	541, 610
Asp700I	GAANNNNTTC	2 cut(s)	91, 692
AspLEI	GCGC	2 cut(s)	359, 461
AspS9I	GGNCC	2 cut(s)	155, 208
AsuII	TTCGAA	1 cut(s)	808
AsuNHI	GCTAGC	1 cut(s)	359
BalI	TGGCCA	1 cut(s)	416
Bbv12I	GWGCWC	1 cut(s)	676
BbvI	GCAGC	3 cut(s)	366, 512, 636
BccI	CCATC	2 cut(s)	365, 718
BceAI	ACGGC	2 cut(s)	406, 429
BcgI	CGANNNNNNTGC	2 cut(s)	798, 832
BciT130I	CCWGG	2 cut(s)	47, 721
BciVI	GTATCC	1 cut(s)	15
BcoDI	GTCTC	1 cut(s)	287
BfaI	CTAG	1 cut(s)	360
BfmI	CTRYAG	1 cut(s)	567
BfoI	RGCGCY	2 cut(s)	360, 462
BfuAI	ACCTGC	1 cut(s)	389
BfuI	GTATCC	1 cut(s)	15
BisI	GCNGC	6 cut(s)	352, 355, 432, 435, 501, 650
BlsI	GCNGC	6 cut(s)	353, 356, 433, 436, 502, 651
BmcAI	AGTACT	1 cut(s)	65
Bme1390I	CCNGG	2 cut(s)	47, 721
BmgT120I	GGNCC	2 cut(s)	155, 208
BmiI	GGNNCC	1 cut(s)	209
BmrFI	CCNGG	2 cut(s)	47, 721
BmrI	ACTGGG	4 cut(s)	44, 155, 162, 564
BmsI	GCATC	1 cut(s)	828
BmtI	GCTAGC	1 cut(s)	363
BmuI	ACTGGG	4 cut(s)	44, 155, 162, 564
BpmI	CTGGAG	1 cut(s)	47
Bpu14I	TTCGAA	1 cut(s)	808
BsaI	GGTCTC	1 cut(s)	287
BsaJI	CCNNGG	4 cut(s)	46, 256, 445, 719
BsaXI	ACNNNNNCTCC	4 cut(s)	232, 262, 660, 690
Bsc4I	CCNNNNNNNGG	7 cut(s)	146, 193, 257, 430, 596, 597, 744
Bse1I	ACTGG	6 cut(s)	30, 39, 150, 157, 417, 559
BseBI	CCWGG	2 cut(s)	47, 721
BseDI	CCNNGG	4 cut(s)	46, 256, 445, 719
BseGI	GGATG	1 cut(s)	373
BseLI	CCNNNNNNNGG	7 cut(s)	146, 193, 257, 430, 596, 597, 744
BseMII	CTCAG	4 cut(s)	32, 307, 360, 545
BseNI	ACTGG	6 cut(s)	30, 39, 150, 157, 417, 559
BseXI	GCAGC	3 cut(s)	366, 512, 636
BseYI	CCCAGC	1 cut(s)	461
Bsh1236I	CGCG	1 cut(s)	431
Bsh1285I	CGRYCG	1 cut(s)	387
BshFI	GGCC	3 cut(s)	157, 210, 416
BsiEI	CGRYCG	1 cut(s)	387
BsiHKAI	GWGCWC	1 cut(s)	676
BslFI	GGGAC	2 cut(s)	51, 495
BslI	CCNNNNNNNGG	7 cut(s)	146, 193, 257, 430, 596, 597, 744
BsmAI	GTCTC	1 cut(s)	287
BsmFI	GGGAC	2 cut(s)	51, 495
BsnI	GGCC	3 cut(s)	157, 210, 416
Bso31I	GGTCTC	1 cut(s)	287
Bsp119I	TTCGAA	1 cut(s)	808
Bsp1286I	GDGCHC	1 cut(s)	676
Bsp143I	GATC	6 cut(s)	96, 136, 166, 196, 384, 426
BspACI	CCGC	6 cut(s)	351, 431, 434, 437, 491, 503
BspANI	GGCC	3 cut(s)	157, 210, 416
BspCNI	CTCAG	4 cut(s)	33, 306, 359, 544
BspFNI	CGCG	1 cut(s)	431
BspHI	TCATGA	1 cut(s)	99
BspLI	GGNNCC	1 cut(s)	209
BspMI	ACCTGC	1 cut(s)	389
BspOI	GCTAGC	1 cut(s)	363
BspPI	GGATC	3 cut(s)	131, 161, 204
BspQI	GCTCTTC	1 cut(s)	523
BspT104I	TTCGAA	1 cut(s)	808
BspTNI	GGTCTC	1 cut(s)	287
BsrI	ACTGG	6 cut(s)	30, 39, 150, 157, 417, 559
BssECI	CCNNGG	4 cut(s)	46, 256, 445, 719
BssMI	GATC	6 cut(s)	96, 136, 166, 196, 384, 426
BssT1I	CCWWGG	1 cut(s)	256
Bst2UI	CCWGG	2 cut(s)	47, 721
Bst4CI	ACNGT	2 cut(s)	164, 244
Bst6I	CTCTTC	2 cut(s)	347, 523
BstAPI	GCANNNNNTGC	1 cut(s)	680
BstBI	TTCGAA	1 cut(s)	808
BstC8I	GCNNGC	1 cut(s)	361
BstDEI	CTNAG	5 cut(s)	41, 293, 346, 531, 714
BstDSI	CCRYGG	1 cut(s)	445
BstENI	CCTNNNNNAGG	1 cut(s)	191
BstF5I	GGATG	1 cut(s)	373
BstFNI	CGCG	1 cut(s)	431
BstH2I	RGCGCY	2 cut(s)	360, 462
BstHHI	GCGC	2 cut(s)	359, 461
BstKTI	GATC	6 cut(s)	99, 139, 169, 199, 387, 429
BstMAI	GTCTC	1 cut(s)	287
BstMBI	GATC	6 cut(s)	96, 136, 166, 196, 384, 426
BstMCI	CGRYCG	1 cut(s)	387
BstMWI	GCNNNNNNNGC	5 cut(s)	360, 497, 680, 689, 724
BstNI	CCWGG	2 cut(s)	47, 721
BstSCI	CCNGG	2 cut(s)	45, 719
BstSFI	CTRYAG	1 cut(s)	567
BstUI	CGCG	1 cut(s)	431
BstV1I	GCAGC	3 cut(s)	366, 512, 636
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
BsuI	GTATCC	1 cut(s)	15
BsuRI	GGCC	3 cut(s)	157, 210, 416
BtgI	CCRYGG	1 cut(s)	445
BtgZI	GCGATG	1 cut(s)	805
BtsCI	GGATG	1 cut(s)	373
BtsI	GCAGTG	1 cut(s)	690
BtsIMutI	CAGTG	5 cut(s)	143, 169, 424, 552, 690
BveI	ACCTGC	1 cut(s)	389
Cac8I	GCNNGC	1 cut(s)	361
CciI	TCATGA	1 cut(s)	99
CfoI	GCGC	2 cut(s)	359, 461
Cfr13I	GGNCC	2 cut(s)	155, 208
CseI	GACGC	1 cut(s)	404
Csp6I	GTAC	4 cut(s)	64, 466, 528, 831
CviAII	CATG	3 cut(s)	100, 680, 828
CviQI	GTAC	4 cut(s)	64, 466, 528, 831
DdeI	CTNAG	5 cut(s)	41, 293, 346, 531, 714
DpnI	GATC	6 cut(s)	98, 138, 168, 198, 386, 428
DpnII	GATC	6 cut(s)	96, 136, 166, 196, 384, 426
EaeI	YGGCCR	1 cut(s)	414
Eam1104I	CTCTTC	2 cut(s)	347, 523
EarI	CTCTTC	2 cut(s)	347, 523
EciI	GGCGGA	1 cut(s)	506
Eco130I	CCWWGG	1 cut(s)	256
Eco31I	GGTCTC	1 cut(s)	287
Eco47III	AGCGCT	1 cut(s)	358
Eco57I	CTGAAG	1 cut(s)	504
EcoNI	CCTNNNNNAGG	1 cut(s)	191
EcoO109I	RGGNCCY	1 cut(s)	208
EcoRI	GAATTC	1 cut(s)	541
EcoRII	CCWGG	2 cut(s)	45, 719
EcoT14I	CCWWGG	1 cut(s)	256
ErhI	CCWWGG	1 cut(s)	256
FaeI	CATG	3 cut(s)	103, 683, 831
FaqI	GGGAC	2 cut(s)	51, 495
FatI	CATG	3 cut(s)	99, 679, 827
Fnu4HI	GCNGC	6 cut(s)	352, 355, 432, 435, 501, 650
FokI	GGATG	1 cut(s)	380
Fsp4HI	GCNGC	6 cut(s)	352, 355, 432, 435, 501, 650
FspBI	CTAG	1 cut(s)	360
GlaI	GCGC	2 cut(s)	358, 460
GluI	GCNGC	6 cut(s)	352, 355, 432, 435, 501, 650
GsaI	CCCAGC	1 cut(s)	465
GsuI	CTGGAG	1 cut(s)	47
HaeII	RGCGCY	2 cut(s)	360, 462
HaeIII	GGCC	3 cut(s)	157, 210, 416
HgaI	GACGC	1 cut(s)	404
HhaI	GCGC	2 cut(s)	359, 461
Hin1II	CATG	3 cut(s)	103, 683, 831
Hin6I	GCGC	2 cut(s)	357, 459
HinP1I	GCGC	2 cut(s)	357, 459
HinfI	GANTC	1 cut(s)	92
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	3 cut(s)	312, 523, 534
Hpy188III	TCNNGA	3 cut(s)	100, 194, 424
Hpy8I	GTNNAC	1 cut(s)	328
Hpy99I	CGWCG	2 cut(s)	392, 398
HpyAV	CCTTC	3 cut(s)	197, 345, 682
HpyCH4III	ACNGT	2 cut(s)	164, 244
HpyCH4IV	ACGT	1 cut(s)	484
HpyCH4V	TGCA	4 cut(s)	500, 582, 683, 819
HpyF10VI	GCNNNNNNNGC	5 cut(s)	360, 497, 680, 689, 724
HpyF3I	CTNAG	5 cut(s)	41, 293, 346, 531, 714
HpySE526I	ACGT	1 cut(s)	484
Hsp92II	CATG	3 cut(s)	103, 683, 831
HspAI	GCGC	2 cut(s)	357, 459
Kzo9I	GATC	6 cut(s)	96, 136, 166, 196, 384, 426
LguI	GCTCTTC	1 cut(s)	523
LmnI	GCTCC	2 cut(s)	406, 646
Lsp1109I	GCAGC	3 cut(s)	366, 512, 636
LweI	GCATC	1 cut(s)	828
MaeI	CTAG	1 cut(s)	360
MaeII	ACGT	1 cut(s)	484
MaeIII	GTNAC	4 cut(s)	244, 550, 585, 755
MalI	GATC	6 cut(s)	98, 138, 168, 198, 386, 428
MboI	GATC	6 cut(s)	96, 136, 166, 196, 384, 426
MboII	GAAGA	2 cut(s)	334, 510
MflI	RGATCY	1 cut(s)	136
MhlI	GDGCHC	1 cut(s)	676
MlsI	TGGCCA	1 cut(s)	416
MluCI	AATT	2 cut(s)	541, 610
MluNI	TGGCCA	1 cut(s)	416
MmeI	TCCRAC	1 cut(s)	164
MnlI	CCTC	8 cut(s)	77, 96, 168, 300, 601, 630, 655, 835
Mox20I	TGGCCA	1 cut(s)	416
MroXI	GAANNNNTTC	2 cut(s)	91, 692
MscI	TGGCCA	1 cut(s)	416
MseI	TTAA	3 cut(s)	273, 615, 838
Msp20I	TGGCCA	1 cut(s)	416
MspA1I	CMGCKG	1 cut(s)	503
MspR9I	CCNGG	2 cut(s)	47, 721
MvaI	CCWGG	2 cut(s)	47, 721
MvnI	CGCG	1 cut(s)	431
MwoI	GCNNNNNNNGC	5 cut(s)	360, 497, 680, 689, 724
NdeII	GATC	6 cut(s)	96, 136, 166, 196, 384, 426
NheI	GCTAGC	1 cut(s)	359
NlaIII	CATG	3 cut(s)	103, 683, 831
NlaIV	GGNNCC	1 cut(s)	209
NspV	TTCGAA	1 cut(s)	808
PagI	TCATGA	1 cut(s)	99
PaqCI	CACCTGC	1 cut(s)	389
PciSI	GCTCTTC	1 cut(s)	523
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PdmI	GAANNNNTTC	2 cut(s)	91, 692
PfeI	GAWTC	1 cut(s)	92
PkrI	GCNGC	6 cut(s)	353, 356, 433, 436, 502, 651
Ple19I	CGATCG	1 cut(s)	387
Psp6I	CCWGG	2 cut(s)	45, 719
PspFI	CCCAGC	1 cut(s)	461
PspGI	CCWGG	2 cut(s)	45, 719
PspN4I	GGNNCC	1 cut(s)	209
PspPI	GGNCC	2 cut(s)	155, 208
PsrI	GAACNNNNNNTAC	2 cut(s)	740, 772
PsuI	RGATCY	1 cut(s)	136
PvuI	CGATCG	1 cut(s)	387
RsaI	GTAC	4 cut(s)	65, 467, 529, 832
RsaNI	GTAC	4 cut(s)	64, 466, 528, 831
SapI	GCTCTTC	1 cut(s)	523
SaqAI	TTAA	3 cut(s)	273, 615, 838
SatI	GCNGC	6 cut(s)	352, 355, 432, 435, 501, 650
Sau3AI	GATC	6 cut(s)	96, 136, 166, 196, 384, 426
Sau96I	GGNCC	2 cut(s)	155, 208
ScaI	AGTACT	1 cut(s)	65
ScrFI	CCNGG	2 cut(s)	47, 721
SduI	GDGCHC	1 cut(s)	676
SetI	ASST	8 cut(s)	107, 403, 487, 568, 651, 729, 802, 815
SfaNI	GCATC	1 cut(s)	828
SfcI	CTRYAG	1 cut(s)	567
SfuI	TTCGAA	1 cut(s)	808
Sse9I	AATT	2 cut(s)	541, 610
SsiI	CCGC	6 cut(s)	351, 431, 434, 437, 491, 503
SspMI	CTAG	1 cut(s)	360
StyD4I	CCNGG	2 cut(s)	45, 719
StyI	CCWWGG	1 cut(s)	256
TaaI	ACNGT	2 cut(s)	164, 244
TaiI	ACGT	1 cut(s)	487
TaqI	TCGA	5 cut(s)	95, 225, 387, 593, 808
TasI	AATT	2 cut(s)	541, 610
TatI	WGTACW	3 cut(s)	63, 527, 830
TauI	GCSGC	3 cut(s)	354, 434, 437
TfiI	GAWTC	1 cut(s)	92
Tru1I	TTAA	3 cut(s)	273, 615, 838
Tru9I	TTAA	3 cut(s)	273, 615, 838
TscAI	CASTG	5 cut(s)	150, 169, 424, 552, 690
TseI	GCWGC	3 cut(s)	354, 500, 649
TspDTI	ATGAA	3 cut(s)	17, 179, 773
TspGWI	ACGGA	2 cut(s)	96, 329
TspRI	CASTG	5 cut(s)	150, 169, 424, 552, 690
XagI	CCTNNNNNAGG	1 cut(s)	191
XapI	RAATTY	2 cut(s)	541, 610
XcmI	CCANNNNNNNNNTGG	2 cut(s)	22, 717
XmnI	GAANNNNTTC	2 cut(s)	91, 692
XspI	CTAG	1 cut(s)	360
ZrmI	AGTACT	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.