Rh3DG013700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Reverse (-)
809014 .. 810963
1950 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG013700.1

Sequence Viewer

Length: 246 bp
ATGTTTGTTTCAGAGCTGGGGTGTATTGAATTTCAAAGCCAAAAATGGGAAGAGAGGCTCCATAGCAAACGTCGCAGCAGCAAATGTCGTTCACGGTGGAGCAATTGGTCGCGGTCAATCGTTAGAACCCTGATATCCTCCCCGATTTCGAAAGCTACGTCAACGGGAATTGAAGTGATATGGTTTTACTACGATCTCATCTTGGTACTTTCCTCTGACTCTTCTCTATTTACTTCATTGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

9.47

Weight (kDa)

9.51

Isoelectric Point (pI)

97.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 112
AciI CCGC 1 cut(s) 112
AcsI RAATTY 1 cut(s) 29
AfaI GTAC 1 cut(s) 207
AfiI CCNNNNNNNGG 1 cut(s) 46
AgsI TTSAA 3 cut(s) 29, 35, 173
AluBI AGCT 2 cut(s) 16, 155
AluI AGCT 2 cut(s) 16, 155
ApeKI GCWGC 2 cut(s) 75, 78
ApoI RAATTY 1 cut(s) 29
ArsI GACNNNNNNTTYG 2 cut(s) 143, 175
AsuII TTCGAA 1 cut(s) 149
BbvI GCAGC 2 cut(s) 87, 90
BisI GCNGC 2 cut(s) 76, 79
BlsI GCNGC 2 cut(s) 77, 80
BmiI GGNNCC 1 cut(s) 59
Bpu14I TTCGAA 1 cut(s) 149
Bsc4I CCNNNNNNNGG 1 cut(s) 46
BseLI CCNNNNNNNGG 1 cut(s) 46
BseXI GCAGC 2 cut(s) 87, 90
BseYI CCCAGC 1 cut(s) 16
Bsh1236I CGCG 1 cut(s) 112
BslI CCNNNNNNNGG 1 cut(s) 46
Bsp119I TTCGAA 1 cut(s) 149
Bsp143I GATC 1 cut(s) 193
BspACI CCGC 1 cut(s) 112
BspFNI CGCG 1 cut(s) 112
BspLI GGNNCC 1 cut(s) 59
BspT104I TTCGAA 1 cut(s) 149
BssMI GATC 1 cut(s) 193
Bst4CI ACNGT 1 cut(s) 96
Bst6I CTCTTC 2 cut(s) 45, 226
BstBI TTCGAA 1 cut(s) 149
BstFNI CGCG 1 cut(s) 112
BstKTI GATC 1 cut(s) 196
BstMBI GATC 1 cut(s) 193
BstMWI GCNNNNNNNGC 1 cut(s) 72
BstUI CGCG 1 cut(s) 112
BstV1I GCAGC 2 cut(s) 87, 90
Csp6I GTAC 1 cut(s) 206
CviJI RGCY 4 cut(s) 16, 39, 58, 155
CviKI_1 RGCY 4 cut(s) 16, 39, 58, 155
CviQI GTAC 1 cut(s) 206
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
Eam1104I CTCTTC 2 cut(s) 45, 226
EarI CTCTTC 2 cut(s) 45, 226
Eco32I GATATC 1 cut(s) 135
EcoRV GATATC 1 cut(s) 135
FaiI YATR 2 cut(s) 63, 181
Fnu4HI GCNGC 2 cut(s) 76, 79
Fsp4HI GCNGC 2 cut(s) 76, 79
GluI GCNGC 2 cut(s) 76, 79
GsaI CCCAGC 1 cut(s) 20
HincII GTYRAC 1 cut(s) 162
HindII GTYRAC 1 cut(s) 162
HinfI GANTC 1 cut(s) 218
Hpy166II GTNNAC 2 cut(s) 92, 162
Hpy188I TCNGA 2 cut(s) 13, 217
Hpy8I GTNNAC 2 cut(s) 92, 162
Hpy99I CGWCG 1 cut(s) 75
HpyCH4III ACNGT 1 cut(s) 96
HpyCH4IV ACGT 2 cut(s) 70, 158
HpyF10VI GCNNNNNNNGC 1 cut(s) 72
HpySE526I ACGT 2 cut(s) 70, 158
Kzo9I GATC 1 cut(s) 193
LmnI GCTCC 2 cut(s) 63, 99
LpnPI CCDG 2 cut(s) 2, 143
Lsp1109I GCAGC 2 cut(s) 87, 90
MaeII ACGT 2 cut(s) 70, 158
MalI GATC 1 cut(s) 195
MboI GATC 1 cut(s) 193
MboII GAAGA 2 cut(s) 62, 213
MfeI CAATTG 1 cut(s) 103
MluCI AATT 3 cut(s) 29, 103, 168
MlyI GAGTC 1 cut(s) 212
MnlI CCTC 3 cut(s) 48, 148, 223
MunI CAATTG 1 cut(s) 103
MvnI CGCG 1 cut(s) 112
MwoI GCNNNNNNNGC 1 cut(s) 72
NdeII GATC 1 cut(s) 193
NlaIV GGNNCC 1 cut(s) 59
NspV TTCGAA 1 cut(s) 149
PcsI WCGNNNNNNNCGW 1 cut(s) 155
PkrI GCNGC 2 cut(s) 77, 80
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
PspFI CCCAGC 1 cut(s) 16
PspN4I GGNNCC 1 cut(s) 59
RsaI GTAC 1 cut(s) 207
RsaNI GTAC 1 cut(s) 206
SatI GCNGC 2 cut(s) 76, 79
Sau3AI GATC 1 cut(s) 193
SchI GAGTC 1 cut(s) 212
SetI ASST 4 cut(s) 18, 73, 157, 161
SfuI TTCGAA 1 cut(s) 149
SgeI CNNG 7 cut(s) 29, 105, 123, 142, 154, 177, 214
Sse9I AATT 3 cut(s) 29, 103, 168
SsiI CCGC 1 cut(s) 112
TaaI ACNGT 1 cut(s) 96
TaiI ACGT 2 cut(s) 73, 161
TaqI TCGA 1 cut(s) 149
TasI AATT 3 cut(s) 29, 103, 168
TseI GCWGC 2 cut(s) 75, 78
TspDTI ATGAA 1 cut(s) 225
XapI RAATTY 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.