RLG00000023219

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0016934
Physical Location & Seq
Reverse (-)
20089500 .. 20094483
4984 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023219

Sequence Viewer

Length: 2130 bp
ATGATAGAGCTGCTTGACGAGACGAGACGTATCTTTTTTCATCCTAGGAAGGCAAAGGTTCAATGCCCACTTATCTCTTCCTCGTCATCTTCAGGTTTTCTATATCCTAGAGACACCCATGTCTTTCAACACCCAGATTGTGGGGATAAGGCGCTTGAAAGAACTTTGACTGGGGTGAGTTTTAGAGTGTATTCTGCCGCTGCTTCTGCATTGTTGCTGGAGGATCATGTGTTTGTGAAAGCTCCATTACCCTTTGAGGCCTTTGCAGTTCAGGAAATTAAAGCTCTGGGGAAAAGGTTTTGTACTCAGAGAAAGGAAAATTTGTATCCCTTTGTTGTCAGATTGTTTAAAACTTTGAATTGGGAGGTCGCATGGGATGCAAGGTTCTCTAAGTCTGTGAAAGAGCATGGCTTTTCTCATTCTTTAAATGCCTTTAGAATTATTGTTCATGAATTTGCATTGGTGGGAATGCAAATGGAAGTGCAGGCTTTGCTTAGAGATGTTGTATGCTATTATCAAGAAGCTAAGTATGATGCATTTGGGCTGTTCCCATATTTATTGGATTCACCTCACAGTGGGGTGAGATCGCTTGTTGTATTTGATGCACTAATAACGGCTTTTGCTGACAACTCGATGCCCGAGAATGCTGTGGATGTGTTTTTGAAGATTAAAAGAATGGGTCTTGAGCCACACATTTGGTCTTGTAATATCTTGCTCAAGTGTTTGGCAGAAGCAAACAAACTGGAATGTGTTAGAAGCTTATTCGAATGTTTGAAAAACTCTGGGCCATCTCCTAATGTTTACACTTACACAGTTATGATGAGCTTTTTCTGTACAGGATATCCACTGCAGGATGTGGATATCAGTCAAGCGACTGACATTCTTCAAGAAATGGAGAAGAGTGGGAAACACCCAACTGCAGTGATATATGCTGAATATATTCATGGACTTTGTAAAGCTGGATATGTTGAGTTTGCTTTGGACTTCATCCGAAACATGCAACACAGAGACCAACCTCTCAATAGTTATTGTTATAATGCTATACTTCGTGGGTTTTGCCAAAAAGGCGAAACTTGTGAAGCTCTAAAATTGTTGGAGGAAATGAAGAGCTACGGGATGGTGCCAGATGTTTATTGCTACACCATATTGATAGATGGATTTTGCAAGGAAGGGGATATAGAGAAAGCTCTTGCTTTGTTTGAGGAAATGGAGCTTTGTAAAATAAAACCTTCTTTGGTTAGCTATAGCTCACTCATATATGGTCTTTGCAAACTTGGATTGATAGATCATATGTTAGATATATATCGTAATCTGGAGTCTGCCGGTGTGTGCCCTGATGCTATTACGTGCACTTTCATTGTTGATGGGTATTGCAGGGAAGGGCGCTTGGAGGAAGCCTTGAGATTTATTTATGAGATGTATCATCAAGGCATAAGCCCCAACTCGTATACTTATAATGCAGTCCTCAACAGTTTGTGCAAGCAAGGAAAGCCAGAAAAAGCATGGGAACTAATCCCTCAAATGCTTAAAAGGAATATACTCCCAGAAGTTGCAAATTATAATACTCTTATAAATGGCTTTGGAAAACAGTTAAATTCAAAGAAGGCCTACATGGTGTATGGAGGAATGCTTAAAGCTGGTGTCGTGCCCAATACAGTCACATATACAATCCTTATCAATATACTCTGCCATAGAGGCAAAATATATGAAGCTTGTGACATGTTCAAGGAAATGAGTGAAAGGGGTTTGGCTGCAGATGTGATTTCTTATACATCTCTAATTGCTGGGTTTTGTAGGATGGGAGACATGAAGAAGGCTTGGGTACTGTTCAAAGAAATGTTGAGCAAAAACCATTGGCCCAATGCTATCACTTATACGTGTTTAATAGATGGTTTTTGCAAGTCTTCTCGCATGGATTATGCCAGTTTCTTGTTTGAGGAAATGAAGAATAAAAATGTTACTCCTGATCTGGTGACTTACACTGTTCTCATCATTGGGTACTGTAGGCTCCGGAATATTGATAGAGCAATTGAGTTATTTGATGAAATGAAGCACAGTGAGATCTATGGACAGGTGGTAGGTTCTCGACGAGAAAGGTTTCATGTCCTCTCATTATTGGATTTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

710

Amino Acids

80.98

Weight (kDa)

6.66

Isoelectric Point (pI)

37.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 231 - 278 1.8e-08 PPR repeat family
PPR_2 PF13041 305 - 354 5.5e-09 PPR repeat family
PPR_long PF17177 323 - 446 2.8e-08 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 340 - 369 3e-07 PPR repeat
PPR_2 PF13041 341 - 389 3.6e-17 PPR repeat family
MRP-S27 PF10037 346 - 403 2.1e-06 Mitochondrial 28S ribosomal protein S27
PPR_3 PF13812 363 - 419 2.2e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 372 - 404 2.6e-14 PPR repeat
PPR_2 PF13041 379 - 424 1.4e-14 PPR repeat family
PPR PF01535 379 - 406 1.1e-08 PPR repeat
PPR_2 PF13041 410 - 459 6.7e-09 PPR repeat family
TPR_24 PF23276 433 - 541 3.5e-08 Fungal tetratrico peptide repeats
PPR_3 PF13812 434 - 491 8.7e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 442 - 473 4.4e-08 PPR repeat
PPR_2 PF13041 445 - 494 1.6e-15 PPR repeat family
PPR_long PF17177 463 - 566 1.4e-08 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 477 - 508 4.6e-08 PPR repeat
PPR PF01535 483 - 513 1.7e-06 PPR repeat
PPR_2 PF13041 484 - 515 2.4e-08 PPR repeat family
PPR_3 PF13812 507 - 562 1.7e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 515 - 564 8.7e-14 PPR repeat family
PPR_1 PF12854 547 - 579 4.4e-10 PPR repeat
PPR_2 PF13041 550 - 599 4.3e-16 PPR repeat family
PPR PF01535 553 - 583 7.8e-08 PPR repeat
TPR_24 PF23276 570 - 682 1.5e-07 Fungal tetratrico peptide repeats
PPR_3 PF13812 575 - 630 1e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 581 - 613 1.9e-10 PPR repeat
PPR_2 PF13041 586 - 634 2.6e-18 PPR repeat family
PPR PF01535 588 - 617 3.4e-08 PPR repeat
PPR_long PF17177 609 - 688 2.7e-08 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 620 - 649 1e-09 PPR repeat
PPR_2 PF13041 620 - 669 7.3e-17 PPR repeat family
PPR PF01535 623 - 653 5.9e-07 PPR repeat
PPR_3 PF13812 644 - 688 9.1e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 651 - 684 3.4e-11 PPR repeat
PPR_2 PF13041 658 - 687 2.4e-06 PPR repeat family
PPR PF01535 658 - 686 3e-08 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016934)

Species Orthologous Gene IDs
malus_domestica MD14G1081200.v1.1
pyrus_communis pycom12g07360 pycom14g07050
rosa_chinensis RchiOBHm_Chr3g0484571
rosa_laevigata RLG00000023219
rosa_multiflora Rmu_co8455711.1_g000001 Rmu_sc0000295.1_g000038 Rmu_sc0032195.1_g000001
rosa_roxburghii Rroxscaffold_6G00397630
rosa_rugosa Rorug03G0211700
rosa_samantha Rh3AG262500 Rh3BG297800 Rh3CG294800 Rh3DG291100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 1035, 1455, 1560, 1571
AasI GACNNNNNNGTC 1 cut(s) 119
AccB1I GGYRCC 1 cut(s) 1120
AccB7I CCANNNNNTGG 1 cut(s) 140
AccI GTMKAC 1 cut(s) 1448
AccIII TCCGGA 1 cut(s) 2010
AciI CCGC 1 cut(s) 198
AclWI GGATC 1 cut(s) 231
AcsI RAATTY 3 cut(s) 319, 452, 1594
AcuI CTGAAG 1 cut(s) 75
AfaI GTAC 4 cut(s) 304, 835, 1824, 2000
AfiI CCNNNNNNNGG 2 cut(s) 140, 575
AflIII ACRYGT 2 cut(s) 1719, 1877
AloI GAACNNNNNNTCC 2 cut(s) 368, 400
Alw21I GWGCWC 1 cut(s) 1352
Alw26I GTCTC 5 cut(s) 14, 19, 105, 1002, 1797
Alw44I GTGCAC 1 cut(s) 1348
AlwI GGATC 1 cut(s) 231
Ama87I CYCGRG 1 cut(s) 638
Aor13HI TCCGGA 1 cut(s) 2010
AoxI GGCC 4 cut(s) 258, 785, 1605, 1856
ApaLI GTGCAC 1 cut(s) 1348
ApeKI GCWGC 3 cut(s) 10, 200, 1751
ApoI RAATTY 3 cut(s) 319, 452, 1594
Asp700I GAANNNNTTC 2 cut(s) 939, 2097
AspA2I CCTAGG 1 cut(s) 44
AspLEI GCGC 2 cut(s) 154, 1386
AspS9I GGNCC 2 cut(s) 785, 1857
AsuHPI GGTGA 4 cut(s) 187, 558, 592, 1984
AsuII TTCGAA 1 cut(s) 765
AvaI CYCGRG 1 cut(s) 638
AvrII CCTAGG 1 cut(s) 44
BaeGI GKGCMC 3 cut(s) 1334, 1352, 1650
BanI GGYRCC 1 cut(s) 1120
BbsI GAAGAC 1 cut(s) 1896
Bbv12I GWGCWC 1 cut(s) 1352
BbvI GCAGC 2 cut(s) 187, 1738
BccI CCATC 6 cut(s) 796, 1111, 1148, 1358, 1792, 1883
BceAI ACGGC 1 cut(s) 630
BciVI GTATCC 1 cut(s) 336
BcoDI GTCTC 5 cut(s) 14, 19, 105, 1002, 1797
BfaI CTAG 2 cut(s) 45, 108
BfmI CTRYAG 5 cut(s) 848, 918, 1243, 1752, 2002
BfoI RGCGCY 2 cut(s) 155, 1387
BfuI GTATCC 1 cut(s) 336
BglI GCCNNNNNGGC 2 cut(s) 1065, 1695
BglII AGATCT 1 cut(s) 2061
BisI GCNGC 4 cut(s) 11, 198, 201, 1752
BlnI CCTAGG 1 cut(s) 44
BlsI GCNGC 4 cut(s) 12, 199, 202, 1753
BmeT110I CYCGRG 1 cut(s) 638
BmgT120I GGNCC 2 cut(s) 785, 1857
BmiI GGNNCC 2 cut(s) 1122, 2009
BmrI ACTGGG 1 cut(s) 180
BmsI GCATC 5 cut(s) 367, 523, 592, 624, 1327
BmuI ACTGGG 1 cut(s) 180
BpiI GAAGAC 1 cut(s) 1896
BpmI CTGGAG 2 cut(s) 239, 1334
Bpu14I TTCGAA 1 cut(s) 765
BpuEI CTTGAG 3 cut(s) 701, 704, 1420
BsaAI YACGTR 2 cut(s) 1347, 1878
BsaBI GATNNNNATC 1 cut(s) 1302
BsaI GGTCTC 1 cut(s) 1002
BsaJI CCNNGG 1 cut(s) 44
BsaWI WCCGGW 1 cut(s) 2010
Bsc4I CCNNNNNNNGG 2 cut(s) 140, 575
Bse118I RCCGGY 1 cut(s) 1322
Bse1I ACTGG 3 cut(s) 175, 747, 1923
Bse8I GATNNNNATC 1 cut(s) 1302
BseAI TCCGGA 1 cut(s) 2010
BseDI CCNNGG 1 cut(s) 44
BseGI GGATG 7 cut(s) 40, 382, 658, 859, 987, 1122, 1803
BseJI GATNNNNATC 1 cut(s) 1302
BseLI CCNNNNNNNGG 2 cut(s) 140, 575
BseMII CTCAG 1 cut(s) 320
BseNI ACTGG 3 cut(s) 175, 747, 1923
BseSI GKGCMC 3 cut(s) 1334, 1352, 1650
BseXI GCAGC 2 cut(s) 187, 1738
BseYI CCCAGC 1 cut(s) 1784
BsgI GTGCAG 1 cut(s) 503
BshFI GGCC 4 cut(s) 260, 787, 1607, 1858
BshNI GGYRCC 1 cut(s) 1120
BsiHKAI GWGCWC 1 cut(s) 1352
BsiHKCI CYCGRG 1 cut(s) 638
BsiSI CCGG 2 cut(s) 1323, 2011
BslI CCNNNNNNNGG 2 cut(s) 140, 575
BsmAI GTCTC 5 cut(s) 14, 19, 105, 1002, 1797
BsmBI CGTCTC 2 cut(s) 14, 19
BsmI GAATGC 3 cut(s) 474, 649, 1632
BsnI GGCC 4 cut(s) 260, 787, 1607, 1858
Bso31I GGTCTC 1 cut(s) 1002
BsoBI CYCGRG 1 cut(s) 638
Bsp119I TTCGAA 1 cut(s) 765
Bsp1286I GDGCHC 3 cut(s) 1334, 1352, 1650
Bsp13I TCCGGA 1 cut(s) 2010
Bsp1407I TGTACA 1 cut(s) 833
Bsp143I GATC 5 cut(s) 223, 584, 1285, 1966, 2061
BspACI CCGC 1 cut(s) 198
BspANI GGCC 4 cut(s) 260, 787, 1607, 1858
BspCNI CTCAG 1 cut(s) 319
BspEI TCCGGA 1 cut(s) 2010
BspHI TCATGA 1 cut(s) 448
BspLI GGNNCC 2 cut(s) 1122, 2009
BspMAI CTGCAG 3 cut(s) 852, 922, 1756
BspPI GGATC 1 cut(s) 231
BspQI GCTCTTC 1 cut(s) 1100
BspT104I TTCGAA 1 cut(s) 765
BspT107I GGYRCC 1 cut(s) 1120
BspTNI GGTCTC 1 cut(s) 1002
BsrFI RCCGGY 1 cut(s) 1322
BsrGI TGTACA 1 cut(s) 833
BsrI ACTGG 3 cut(s) 175, 747, 1923
BssAI RCCGGY 1 cut(s) 1322
BssECI CCNNGG 1 cut(s) 44
BssMI GATC 5 cut(s) 223, 584, 1285, 1966, 2061
BssNAI GTATAC 1 cut(s) 1449
BssT1I CCWWGG 1 cut(s) 44
Bst1107I GTATAC 1 cut(s) 1449
Bst4CI ACNGT 9 cut(s) 575, 814, 1472, 1590, 1657, 1827, 1984, 2003, 2057
Bst6I CTCTTC 3 cut(s) 82, 893, 1100
BstAPI GCANNNNNTGC 2 cut(s) 377, 490
BstAUI TGTACA 1 cut(s) 833
BstBAI YACGTR 2 cut(s) 1347, 1878
BstBI TTCGAA 1 cut(s) 765
BstC8I GCNNGC 2 cut(s) 486, 1481
BstDEI CTNAG 4 cut(s) 306, 390, 494, 525
BstF5I GGATG 7 cut(s) 40, 382, 658, 859, 987, 1122, 1803
BstH2I RGCGCY 2 cut(s) 155, 1387
BstHHI GCGC 2 cut(s) 154, 1386
BstKTI GATC 5 cut(s) 226, 587, 1288, 1969, 2064
BstMAI GTCTC 5 cut(s) 14, 19, 105, 1002, 1797
BstMBI GATC 5 cut(s) 223, 584, 1285, 1966, 2061
BstMWI GCNNNNNNNGC 6 cut(s) 206, 377, 490, 1065, 1489, 1695
BstNSI RCATGY 2 cut(s) 1000, 1723
BstSFI CTRYAG 5 cut(s) 848, 918, 1243, 1752, 2002
BstSLI GKGCMC 3 cut(s) 1334, 1352, 1650
BstV1I GCAGC 2 cut(s) 187, 1738
BstV2I GAAGAC 1 cut(s) 1896
BstX2I RGATCY 1 cut(s) 2061
BstXI CCANNNNNNTGG 1 cut(s) 696
BstYI RGATCY 1 cut(s) 2061
BstZ17I GTATAC 1 cut(s) 1449
BsuI GTATCC 1 cut(s) 336
BsuRI GGCC 4 cut(s) 260, 787, 1607, 1858
BtsCI GGATG 7 cut(s) 40, 382, 658, 859, 987, 1122, 1803
BtsI GCAGTG 2 cut(s) 845, 927
BtsIMutI CAGTG 5 cut(s) 580, 845, 927, 1980, 2062
Cac8I GCNNGC 2 cut(s) 486, 1481
CciI TCATGA 1 cut(s) 448
CfoI GCGC 2 cut(s) 154, 1386
Cfr10I RCCGGY 1 cut(s) 1322
Cfr13I GGNCC 2 cut(s) 785, 1857
Csp6I GTAC 4 cut(s) 303, 834, 1823, 1999
CviQI GTAC 4 cut(s) 303, 834, 1823, 1999
DdeI CTNAG 4 cut(s) 306, 390, 494, 525
DpnI GATC 5 cut(s) 225, 586, 1287, 1968, 2063
DpnII GATC 5 cut(s) 223, 584, 1285, 1966, 2061
DraI TTTAAA 2 cut(s) 349, 426
DrdI GACNNNNNNGTC 1 cut(s) 119
DseDI GACNNNNNNGTC 1 cut(s) 119
Eam1104I CTCTTC 3 cut(s) 82, 893, 1100
EarI CTCTTC 3 cut(s) 82, 893, 1100
Eco130I CCWWGG 1 cut(s) 44
Eco147I AGGCCT 2 cut(s) 260, 1607
Eco31I GGTCTC 1 cut(s) 1002
Eco32I GATATC 2 cut(s) 842, 862
Eco57I CTGAAG 1 cut(s) 75
Eco88I CYCGRG 1 cut(s) 638
EcoRV GATATC 2 cut(s) 842, 862
EcoT14I CCWWGG 1 cut(s) 44
EcoT22I ATGCAT 1 cut(s) 538
ErhI CCWWGG 1 cut(s) 44
Esp3I CGTCTC 2 cut(s) 14, 19
FauNDI CATATG 1 cut(s) 1290
FblI GTMKAC 1 cut(s) 1448
Fnu4HI GCNGC 4 cut(s) 11, 198, 201, 1752
FokI GGATG 7 cut(s) 27, 389, 665, 866, 974, 1129, 1810
Fsp4HI GCNGC 4 cut(s) 11, 198, 201, 1752
FspBI CTAG 2 cut(s) 45, 108
GlaI GCGC 2 cut(s) 153, 1385
GluI GCNGC 4 cut(s) 11, 198, 201, 1752
GsaI CCCAGC 1 cut(s) 1788
GsuI CTGGAG 2 cut(s) 239, 1334
HaeII RGCGCY 2 cut(s) 155, 1387
HaeIII GGCC 4 cut(s) 260, 787, 1607, 1858
HapII CCGG 2 cut(s) 1323, 2011
HhaI GCGC 2 cut(s) 154, 1386
Hin6I GCGC 2 cut(s) 152, 1384
HinP1I GCGC 2 cut(s) 152, 1384
HindIII AAGCTT 2 cut(s) 757, 1710
HinfI GANTC 2 cut(s) 563, 1316
HpaII CCGG 2 cut(s) 1323, 2011
HphI GGTGA 4 cut(s) 187, 558, 592, 1984
Hpy166II GTNNAC 3 cut(s) 802, 1350, 1449
Hpy188I TCNGA 3 cut(s) 309, 341, 992
Hpy188III TCNNGA 9 cut(s) 272, 449, 518, 683, 887, 1313, 1964, 2011, 2085
Hpy8I GTNNAC 3 cut(s) 802, 1350, 1449
Hpy99I CGWCG 1 cut(s) 2091
HpyAV CCTTC 6 cut(s) 43, 1163, 1239, 1373, 1597, 1807
HpyCH4III ACNGT 9 cut(s) 575, 814, 1472, 1590, 1657, 1827, 1984, 2003, 2057
HpyCH4IV ACGT 3 cut(s) 28, 1346, 1877
HpyF10VI GCNNNNNNNGC 6 cut(s) 206, 377, 490, 1065, 1489, 1695
HpyF3I CTNAG 4 cut(s) 306, 390, 494, 525
HpySE526I ACGT 3 cut(s) 28, 1346, 1877
HspAI GCGC 2 cut(s) 152, 1384
Kpn2I TCCGGA 1 cut(s) 2010
Kzo9I GATC 5 cut(s) 223, 584, 1285, 1966, 2061
LguI GCTCTTC 1 cut(s) 1100
LmnI GCTCC 3 cut(s) 247, 1210, 2013
Lsp1109I GCAGC 2 cut(s) 187, 1738
LweI GCATC 5 cut(s) 367, 523, 592, 624, 1327
MaeI CTAG 2 cut(s) 45, 108
MaeII ACGT 3 cut(s) 28, 1346, 1877
MaeIII GTNAC 4 cut(s) 1657, 1715, 1957, 1972
MalI GATC 5 cut(s) 225, 586, 1287, 1968, 2063
MboI GATC 5 cut(s) 223, 584, 1285, 1966, 2061
MboII GAAGA 9 cut(s) 69, 81, 676, 875, 910, 1117, 1822, 1896, 1957
MfeI CAATTG 1 cut(s) 2028
MflI RGATCY 1 cut(s) 2061
MhlI GDGCHC 3 cut(s) 1334, 1352, 1650
MlyI GAGTC 1 cut(s) 1325
MmeI TCCRAC 1 cut(s) 1074
Mph1103I ATGCAT 1 cut(s) 538
MroI TCCGGA 1 cut(s) 2010
MroXI GAANNNNTTC 2 cut(s) 939, 2097
MseI TTAA 8 cut(s) 279, 348, 425, 669, 1527, 1592, 1632, 1883
MslI CAYNNNNRTG 1 cut(s) 815
MspA1I CMGCKG 1 cut(s) 200
MspI CCGG 2 cut(s) 1323, 2011
MunI CAATTG 1 cut(s) 2028
Mva1269I GAATGC 3 cut(s) 474, 649, 1632
MwoI GCNNNNNNNGC 6 cut(s) 206, 377, 490, 1065, 1489, 1695
NdeI CATATG 1 cut(s) 1290
NdeII GATC 5 cut(s) 223, 584, 1285, 1966, 2061
NlaIV GGNNCC 2 cut(s) 1122, 2009
NmuCI GTSAC 3 cut(s) 1657, 1715, 1972
NsiI ATGCAT 1 cut(s) 538
NspI RCATGY 2 cut(s) 1000, 1723
NspV TTCGAA 1 cut(s) 765
PagI TCATGA 1 cut(s) 448
PceI AGGCCT 2 cut(s) 260, 1607
PciI ACATGT 1 cut(s) 1719
PciSI GCTCTTC 1 cut(s) 1100
PctI GAATGC 3 cut(s) 474, 649, 1632
PdmI GAANNNNTTC 2 cut(s) 939, 2097
PfeI GAWTC 1 cut(s) 563
PflMI CCANNNNNTGG 1 cut(s) 140
PkrI GCNGC 4 cut(s) 12, 199, 202, 1753
PleI GAGTC 1 cut(s) 1324
PpsI GAGTC 1 cut(s) 1324
Ppu21I YACGTR 2 cut(s) 1347, 1878
PscI ACATGT 1 cut(s) 1719
PsiI TTATAA 4 cut(s) 1035, 1455, 1560, 1571
PspFI CCCAGC 1 cut(s) 1784
PspN4I GGNNCC 2 cut(s) 1122, 2009
PspPI GGNCC 2 cut(s) 785, 1857
PstI CTGCAG 3 cut(s) 852, 922, 1756
PsuI RGATCY 1 cut(s) 2061
RsaI GTAC 4 cut(s) 304, 835, 1824, 2000
RsaNI GTAC 4 cut(s) 303, 834, 1823, 1999
RseI CAYNNNNRTG 1 cut(s) 815
SapI GCTCTTC 1 cut(s) 1100
SaqAI TTAA 8 cut(s) 279, 348, 425, 669, 1527, 1592, 1632, 1883
SatI GCNGC 4 cut(s) 11, 198, 201, 1752
Sau3AI GATC 5 cut(s) 223, 584, 1285, 1966, 2061
Sau96I GGNCC 2 cut(s) 785, 1857
SchI GAGTC 1 cut(s) 1325
SduI GDGCHC 3 cut(s) 1334, 1352, 1650
SfaNI GCATC 5 cut(s) 367, 523, 592, 624, 1327
SfcI CTRYAG 5 cut(s) 848, 918, 1243, 1752, 2002
SfuI TTCGAA 1 cut(s) 765
SmiMI CAYNNNNRTG 1 cut(s) 815
SmlI CTYRAG 3 cut(s) 683, 716, 1399
SmoI CTYRAG 3 cut(s) 683, 716, 1399
SseBI AGGCCT 2 cut(s) 260, 1607
SsiI CCGC 1 cut(s) 198
SspI AATATT 1 cut(s) 2017
SspMI CTAG 2 cut(s) 45, 108
StuI AGGCCT 2 cut(s) 260, 1607
StyI CCWWGG 1 cut(s) 44
TaaI ACNGT 9 cut(s) 575, 814, 1472, 1590, 1657, 1827, 1984, 2003, 2057
TaiI ACGT 3 cut(s) 31, 1349, 1880
TaqI TCGA 3 cut(s) 632, 765, 2086
TatI WGTACW 2 cut(s) 302, 833
TauI GCSGC 1 cut(s) 200
TfiI GAWTC 1 cut(s) 563
Tru1I TTAA 8 cut(s) 279, 348, 425, 669, 1527, 1592, 1632, 1883
Tru9I TTAA 8 cut(s) 279, 348, 425, 669, 1527, 1592, 1632, 1883
TscAI CASTG 5 cut(s) 580, 852, 927, 1987, 2062
TseFI GTSAC 3 cut(s) 1657, 1715, 1972
TseI GCWGC 3 cut(s) 10, 200, 1751
Tsp45I GTSAC 3 cut(s) 1657, 1715, 1972
TspRI CASTG 5 cut(s) 580, 852, 927, 1987, 2062
Van91I CCANNNNNTGG 1 cut(s) 140
VneI GTGCAC 1 cut(s) 1348
XapI RAATTY 3 cut(s) 319, 452, 1594
XceI RCATGY 2 cut(s) 1000, 1723
XcmI CCANNNNNNNNNTGG 1 cut(s) 1500
XmaJI CCTAGG 1 cut(s) 44
XmiI GTMKAC 1 cut(s) 1448
XmnI GAANNNNTTC 2 cut(s) 939, 2097
XspI CTAG 2 cut(s) 45, 108
Zsp2I ATGCAT 1 cut(s) 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.