Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032195.1

Orthogroup ID

OG0016934

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 621

Gene Structure 621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032195.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 403 bp

tttaggtgatactgggaaagctttcgagtatttttccaaattgaggaatgatggcctagagattgatgttttcacatatgaggcattgctgaaggcatgttgcaaagcaggcaaaatgcagagtgctttagctgtcaccaaggaaatgagtgctcaaaaaattccaaggaatacctttgtgtacaacatattagttgatggatgggctcgaagaggtgatgtttgggaggctgctgacttgatgcagcaaatgaaacgggaaggggttcaacctgatatccgctcctacacgtctttcataaatgcttgttccaaggccggagacatgcaggtaatccactttagtaatttctcgtatattcctattgtactgtttgatgtggaacggtttccagtagtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 RRM_1

Protein Analysis

133

Amino Acids

15.07

Weight (kDa)

6.78

Isoelectric Point (pI)

36.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016934)

Species	Orthologous Gene IDs
malus_domestica	MD14G1081200.v1.1
pyrus_communis	pycom12g07360 pycom14g07050
rosa_chinensis	RchiOBHm_Chr3g0484571
rosa_laevigata	RLG00000023219
rosa_multiflora	Rmu_co8455711.1_g000001 Rmu_sc0000295.1_g000038 Rmu_sc0032195.1_g000001
rosa_roxburghii	Rroxscaffold_6G00397630
rosa_rugosa	Rorug03G0211700
rosa_samantha	Rh3AG262500 Rh3BG297800 Rh3CG294800 Rh3DG291100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	320
AccBSI	CCGCTC	1 cut(s)	283
AciI	CCGC	1 cut(s)	281
AcsI	RAATTY	1 cut(s)	160
AcuI	CTGAAG	1 cut(s)	111
AfaI	GTAC	2 cut(s)	183, 370
AfiI	CCNNNNNNNGG	1 cut(s)	43
AflIII	ACRYGT	1 cut(s)	289
AgsI	TTSAA	1 cut(s)	270
AjiI	CACGTC	1 cut(s)	292
AluBI	AGCT	2 cut(s)	21, 132
AluI	AGCT	2 cut(s)	21, 132
Alw21I	GWGCWC	1 cut(s)	155
Alw26I	GTCTC	1 cut(s)	316
AoxI	GGCC	2 cut(s)	53, 316
ApeKI	GCWGC	2 cut(s)	231, 245
ApoI	RAATTY	1 cut(s)	160
Asp700I	GAANNNNTTC	3 cut(s)	21, 265, 388
AsuHPI	GGTGA	3 cut(s)	18, 128, 228
BanII	GRGCYC	1 cut(s)	209
Bbv12I	GWGCWC	1 cut(s)	155
BbvI	GCAGC	2 cut(s)	218, 257
BccI	CCATC	3 cut(s)	45, 192, 196
BcoDI	GTCTC	1 cut(s)	316
BfaI	CTAG	1 cut(s)	57
BfuAI	ACCTGC	1 cut(s)	320
BisI	GCNGC	2 cut(s)	232, 246
BlsI	GCNGC	2 cut(s)	233, 247
BmgBI	CACGTC	1 cut(s)	292
BmrI	ACTGGG	1 cut(s)	22
BmsI	GCATC	1 cut(s)	232
BmuI	ACTGGG	1 cut(s)	22
BsaJI	CCNNGG	3 cut(s)	139, 165, 313
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
Bse1I	ACTGG	2 cut(s)	17, 393
Bse3DI	GCAATG	1 cut(s)	84
BseDI	CCNNGG	3 cut(s)	139, 165, 313
BseGI	GGATG	1 cut(s)	207
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseMI	GCAATG	1 cut(s)	84
BseNI	ACTGG	2 cut(s)	17, 393
BseXI	GCAGC	2 cut(s)	218, 257
BshFI	GGCC	2 cut(s)	55, 318
BsiHKAI	GWGCWC	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	319
BslI	CCNNNNNNNGG	1 cut(s)	43
BsmAI	GTCTC	1 cut(s)	316
BsnI	GGCC	2 cut(s)	55, 318
Bsp1286I	GDGCHC	2 cut(s)	155, 209
Bsp1407I	TGTACA	1 cut(s)	181
BspACI	CCGC	1 cut(s)	281
BspANI	GGCC	2 cut(s)	55, 318
BspMI	ACCTGC	1 cut(s)	320
BsrBI	CCGCTC	1 cut(s)	283
BsrDI	GCAATG	1 cut(s)	84
BsrGI	TGTACA	1 cut(s)	181
BsrI	ACTGG	2 cut(s)	17, 393
BssECI	CCNNGG	3 cut(s)	139, 165, 313
BssT1I	CCWWGG	3 cut(s)	139, 165, 313
Bst4CI	ACNGT	2 cut(s)	373, 388
Bst6I	CTCTTC	1 cut(s)	206
BstAUI	TGTACA	1 cut(s)	181
BstC8I	GCNNGC	1 cut(s)	110
BstF5I	GGATG	1 cut(s)	207
BstMAI	GTCTC	1 cut(s)	316
BstMWI	GCNNNNNNNGC	1 cut(s)	109
BstNSI	RCATGY	2 cut(s)	100, 329
BstV1I	GCAGC	2 cut(s)	218, 257
BsuRI	GGCC	2 cut(s)	55, 318
BtrI	CACGTC	1 cut(s)	292
BtsCI	GGATG	1 cut(s)	207
BveI	ACCTGC	1 cut(s)	320
Cac8I	GCNNGC	1 cut(s)	110
Csp6I	GTAC	2 cut(s)	182, 369
CviAII	CATG	2 cut(s)	97, 326
CviJI	RGCY	6 cut(s)	21, 55, 132, 207, 231, 318
CviKI_1	RGCY	6 cut(s)	21, 55, 132, 207, 231, 318
CviQI	GTAC	2 cut(s)	182, 369
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
Eco130I	CCWWGG	3 cut(s)	139, 165, 313
Eco24I	GRGCYC	1 cut(s)	209
Eco32I	GATATC	1 cut(s)	278
Eco57I	CTGAAG	1 cut(s)	111
EcoRV	GATATC	1 cut(s)	278
EcoT14I	CCWWGG	3 cut(s)	139, 165, 313
EcoT38I	GRGCYC	1 cut(s)	209
ErhI	CCWWGG	3 cut(s)	139, 165, 313
FaeI	CATG	2 cut(s)	100, 329
FaiI	YATR	7 cut(s)	77, 79, 98, 189, 300, 327, 358
FatI	CATG	2 cut(s)	96, 325
FauNDI	CATATG	1 cut(s)	77
Fnu4HI	GCNGC	2 cut(s)	232, 246
FokI	GGATG	1 cut(s)	214
FriOI	GRGCYC	1 cut(s)	209
Fsp4HI	GCNGC	2 cut(s)	232, 246
FspBI	CTAG	1 cut(s)	57
GluI	GCNGC	2 cut(s)	232, 246
HaeIII	GGCC	2 cut(s)	55, 318
HapII	CCGG	1 cut(s)	319
Hin1II	CATG	2 cut(s)	100, 329
HindIII	AAGCTT	1 cut(s)	19
HpaII	CCGG	1 cut(s)	319
HphI	GGTGA	3 cut(s)	18, 128, 228
Hpy166II	GTNNAC	1 cut(s)	182
Hpy8I	GTNNAC	1 cut(s)	182
HpyAV	CCTTC	2 cut(s)	86, 255
HpyCH4III	ACNGT	2 cut(s)	373, 388
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	4 cut(s)	103, 119, 245, 329
HpyF10VI	GCNNNNNNNGC	1 cut(s)	109
HpySE526I	ACGT	1 cut(s)	291
Hsp92II	CATG	2 cut(s)	100, 329
LmnI	GCTCC	1 cut(s)	288
LpnPI	CCDG	4 cut(s)	94, 286, 315, 332
Lsp1109I	GCAGC	2 cut(s)	218, 257
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	1 cut(s)	57
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	1 cut(s)	134
MbiI	CCGCTC	1 cut(s)	283
MboII	GAAGA	1 cut(s)	223
MhlI	GDGCHC	2 cut(s)	155, 209
MluCI	AATT	3 cut(s)	39, 160, 347
MnlI	CCTC	4 cut(s)	37, 74, 207, 221
MroXI	GAANNNNTTC	3 cut(s)	21, 265, 388
MspI	CCGG	1 cut(s)	319
MwoI	GCNNNNNNNGC	1 cut(s)	109
NdeI	CATATG	1 cut(s)	77
NlaIII	CATG	2 cut(s)	100, 329
NmuCI	GTSAC	1 cut(s)	134
NspI	RCATGY	2 cut(s)	100, 329
PdmI	GAANNNNTTC	3 cut(s)	21, 265, 388
PkrI	GCNGC	2 cut(s)	233, 247
RsaI	GTAC	2 cut(s)	183, 370
RsaNI	GTAC	2 cut(s)	182, 369
SatI	GCNGC	2 cut(s)	232, 246
SduI	GDGCHC	2 cut(s)	155, 209
SetI	ASST	8 cut(s)	8, 23, 134, 177, 218, 275, 294, 334
SfaNI	GCATC	1 cut(s)	232
Sse9I	AATT	3 cut(s)	39, 160, 347
SsiI	CCGC	1 cut(s)	281
SspMI	CTAG	1 cut(s)	57
StyI	CCWWGG	3 cut(s)	139, 165, 313
TaaI	ACNGT	2 cut(s)	373, 388
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	2 cut(s)	25, 209
TasI	AATT	3 cut(s)	39, 160, 347
TatI	WGTACW	2 cut(s)	181, 368
TseFI	GTSAC	1 cut(s)	134
TseI	GCWGC	2 cut(s)	231, 245
Tsp45I	GTSAC	1 cut(s)	134
TspDTI	ATGAA	2 cut(s)	267, 287
XapI	RAATTY	1 cut(s)	160
XceI	RCATGY	2 cut(s)	100, 329
XmnI	GAANNNNTTC	3 cut(s)	21, 265, 388
XspI	CTAG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.