Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD14G1081200.v1.1 |
| pyrus_communis | pycom12g07360 pycom14g07050 |
| rosa_chinensis | RchiOBHm_Chr3g0484571 |
| rosa_laevigata | RLG00000023219 |
| rosa_multiflora | Rmu_co8455711.1_g000001 Rmu_sc0000295.1_g000038 Rmu_sc0032195.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00397630 |
| rosa_rugosa | Rorug03G0211700 |
| rosa_samantha | Rh3AG262500 Rh3BG297800 Rh3CG294800 Rh3DG291100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 4 cut(s) | 402, 822, 927, 938 |
| AccB1I | GGYRCC | 1 cut(s) | 487 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1479 |
| AccI | GTMKAC | 2 cut(s) | 815, 1241 |
| AccIII | TCCGGA | 1 cut(s) | 1377 |
| AcsI | RAATTY | 1 cut(s) | 961 |
| AfaI | GTAC | 3 cut(s) | 202, 1191, 1367 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1479 |
| AflIII | ACRYGT | 2 cut(s) | 1086, 1244 |
| AgsI | TTSAA | 7 cut(s) | 31, 142, 254, 961, 966, 1093, 1198 |
| Alw26I | GTCTC | 2 cut(s) | 369, 1164 |
| Aor13HI | TCCGGA | 1 cut(s) | 1377 |
| AoxI | GGCC | 2 cut(s) | 152, 972 |
| ApeKI | GCWGC | 1 cut(s) | 1118 |
| ApoI | RAATTY | 1 cut(s) | 961 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 993, 1025 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 306 |
| AspLEI | GCGC | 1 cut(s) | 753 |
| AspS9I | GGNCC | 1 cut(s) | 152 |
| AsuHPI | GGTGA | 1 cut(s) | 1351 |
| AsuII | TTCGAA | 1 cut(s) | 132 |
| BaeGI | GKGCMC | 1 cut(s) | 701 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1411, 1444 |
| BanI | GGYRCC | 1 cut(s) | 487 |
| BbvI | GCAGC | 1 cut(s) | 1105 |
| BccI | CCATC | 7 cut(s) | 163, 478, 515, 725, 1159, 1250, 1433 |
| BcoDI | GTCTC | 2 cut(s) | 369, 1164 |
| BfmI | CTRYAG | 5 cut(s) | 215, 285, 610, 1119, 1369 |
| BfoI | RGCGCY | 1 cut(s) | 754 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 432, 1062 |
| BisI | GCNGC | 1 cut(s) | 1119 |
| BlsI | GCNGC | 1 cut(s) | 1120 |
| BmgT120I | GGNCC | 1 cut(s) | 152 |
| BmiI | GGNNCC | 2 cut(s) | 489, 1376 |
| BmsI | GCATC | 1 cut(s) | 694 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 981, 1013 |
| BpmI | CTGGAG | 1 cut(s) | 701 |
| Bpu14I | TTCGAA | 1 cut(s) | 132 |
| BpuEI | CTTGAG | 3 cut(s) | 68, 71, 787 |
| BsaAI | YACGTR | 2 cut(s) | 1239, 1245 |
| BsaBI | GATNNNNATC | 1 cut(s) | 669 |
| BsaI | GGTCTC | 1 cut(s) | 369 |
| BsaWI | WCCGGW | 1 cut(s) | 1377 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1479 |
| Bse118I | RCCGGY | 1 cut(s) | 689 |
| Bse1I | ACTGG | 2 cut(s) | 114, 1290 |
| Bse8I | GATNNNNATC | 1 cut(s) | 669 |
| BseAI | TCCGGA | 1 cut(s) | 1377 |
| BseGI | GGATG | 6 cut(s) | 25, 226, 354, 489, 1170, 1444 |
| BseJI | GATNNNNATC | 1 cut(s) | 669 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1479 |
| BseMII | CTCAG | 1 cut(s) | 1446 |
| BseNI | ACTGG | 2 cut(s) | 114, 1290 |
| BseSI | GKGCMC | 1 cut(s) | 701 |
| BseXI | GCAGC | 1 cut(s) | 1105 |
| BseYI | CCCAGC | 1 cut(s) | 1151 |
| BshFI | GGCC | 2 cut(s) | 154, 974 |
| BshNI | GGYRCC | 1 cut(s) | 487 |
| BsiSI | CCGG | 2 cut(s) | 690, 1378 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1479 |
| BsmAI | GTCTC | 2 cut(s) | 369, 1164 |
| BsmI | GAATGC | 2 cut(s) | 16, 999 |
| BsnI | GGCC | 2 cut(s) | 154, 974 |
| Bso31I | GGTCTC | 1 cut(s) | 369 |
| Bsp119I | TTCGAA | 1 cut(s) | 132 |
| Bsp1286I | GDGCHC | 1 cut(s) | 701 |
| Bsp13I | TCCGGA | 1 cut(s) | 1377 |
| Bsp1407I | TGTACA | 1 cut(s) | 200 |
| Bsp143I | GATC | 2 cut(s) | 652, 1333 |
| BspANI | GGCC | 2 cut(s) | 154, 974 |
| BspCNI | CTCAG | 1 cut(s) | 1445 |
| BspEI | TCCGGA | 1 cut(s) | 1377 |
| BspLI | GGNNCC | 2 cut(s) | 489, 1376 |
| BspMAI | CTGCAG | 3 cut(s) | 219, 289, 1123 |
| BspQI | GCTCTTC | 1 cut(s) | 467 |
| BspT104I | TTCGAA | 1 cut(s) | 132 |
| BspT107I | GGYRCC | 1 cut(s) | 487 |
| BspTNI | GGTCTC | 1 cut(s) | 369 |
| BsrFI | RCCGGY | 1 cut(s) | 689 |
| BsrGI | TGTACA | 1 cut(s) | 200 |
| BsrI | ACTGG | 2 cut(s) | 114, 1290 |
| BssAI | RCCGGY | 1 cut(s) | 689 |
| BssMI | GATC | 2 cut(s) | 652, 1333 |
| BssNAI | GTATAC | 2 cut(s) | 816, 1242 |
| Bst1107I | GTATAC | 2 cut(s) | 816, 1242 |
| Bst4CI | ACNGT | 9 cut(s) | 181, 629, 839, 957, 1024, 1194, 1351, 1370, 1424 |
| Bst6I | CTCTTC | 2 cut(s) | 260, 467 |
| BstAUI | TGTACA | 1 cut(s) | 200 |
| BstBAI | YACGTR | 2 cut(s) | 1239, 1245 |
| BstBI | TTCGAA | 1 cut(s) | 132 |
| BstC8I | GCNNGC | 2 cut(s) | 848, 976 |
| BstDEI | CTNAG | 2 cut(s) | 6, 1432 |
| BstF5I | GGATG | 6 cut(s) | 25, 226, 354, 489, 1170, 1444 |
| BstH2I | RGCGCY | 1 cut(s) | 754 |
| BstHHI | GCGC | 1 cut(s) | 753 |
| BstKTI | GATC | 2 cut(s) | 655, 1336 |
| BstMAI | GTCTC | 2 cut(s) | 369, 1164 |
| BstMBI | GATC | 2 cut(s) | 652, 1333 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 432, 856, 1062, 1454 |
| BstNSI | RCATGY | 2 cut(s) | 367, 1090 |
| BstSFI | CTRYAG | 5 cut(s) | 215, 285, 610, 1119, 1369 |
| BstSLI | GKGCMC | 1 cut(s) | 701 |
| BstV1I | GCAGC | 1 cut(s) | 1105 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 63 |
| BstZ17I | GTATAC | 2 cut(s) | 816, 1242 |
| BsuRI | GGCC | 2 cut(s) | 154, 974 |
| BtsCI | GGATG | 6 cut(s) | 25, 226, 354, 489, 1170, 1444 |
| BtsI | GCAGTG | 2 cut(s) | 212, 294 |
| BtsIMutI | CAGTG | 4 cut(s) | 212, 294, 1347, 1429 |
| Cac8I | GCNNGC | 2 cut(s) | 848, 976 |
| CfoI | GCGC | 1 cut(s) | 753 |
| Cfr10I | RCCGGY | 1 cut(s) | 689 |
| Cfr13I | GGNCC | 1 cut(s) | 152 |
| Csp6I | GTAC | 3 cut(s) | 201, 1190, 1366 |
| CviAII | CATG | 8 cut(s) | 311, 364, 870, 979, 1012, 1087, 1174, 1279 |
| CviQI | GTAC | 3 cut(s) | 201, 1190, 1366 |
| DdeI | CTNAG | 2 cut(s) | 6, 1432 |
| DpnI | GATC | 2 cut(s) | 654, 1335 |
| DpnII | GATC | 2 cut(s) | 652, 1333 |
| Eam1104I | CTCTTC | 2 cut(s) | 260, 467 |
| EarI | CTCTTC | 2 cut(s) | 260, 467 |
| Eco147I | AGGCCT | 1 cut(s) | 974 |
| Eco31I | GGTCTC | 1 cut(s) | 369 |
| Eco32I | GATATC | 1 cut(s) | 209 |
| EcoRI | GAATTC | 1 cut(s) | 961 |
| EcoRV | GATATC | 1 cut(s) | 209 |
| FaeI | CATG | 8 cut(s) | 314, 367, 873, 982, 1015, 1090, 1177, 1282 |
| FatI | CATG | 8 cut(s) | 310, 363, 869, 978, 1011, 1086, 1173, 1278 |
| FauNDI | CATATG | 1 cut(s) | 657 |
| FblI | GTMKAC | 2 cut(s) | 815, 1241 |
| Fnu4HI | GCNGC | 1 cut(s) | 1119 |
| FokI | GGATG | 6 cut(s) | 32, 233, 341, 496, 1177, 1451 |
| Fsp4HI | GCNGC | 1 cut(s) | 1119 |
| GlaI | GCGC | 1 cut(s) | 752 |
| GluI | GCNGC | 1 cut(s) | 1119 |
| GsaI | CCCAGC | 1 cut(s) | 1155 |
| GsuI | CTGGAG | 1 cut(s) | 701 |
| HaeII | RGCGCY | 1 cut(s) | 754 |
| HaeIII | GGCC | 2 cut(s) | 154, 974 |
| HapII | CCGG | 2 cut(s) | 690, 1378 |
| HhaI | GCGC | 1 cut(s) | 753 |
| Hin1II | CATG | 8 cut(s) | 314, 367, 873, 982, 1015, 1090, 1177, 1282 |
| Hin6I | GCGC | 1 cut(s) | 751 |
| HinP1I | GCGC | 1 cut(s) | 751 |
| HindIII | AAGCTT | 3 cut(s) | 124, 1077, 1455 |
| HinfI | GANTC | 1 cut(s) | 683 |
| HpaII | CCGG | 2 cut(s) | 690, 1378 |
| HphI | GGTGA | 1 cut(s) | 1351 |
| Hpy166II | GTNNAC | 4 cut(s) | 169, 816, 1242, 1489 |
| Hpy188I | TCNGA | 1 cut(s) | 359 |
| Hpy188III | TCNNGA | 5 cut(s) | 50, 254, 680, 1331, 1378 |
| Hpy8I | GTNNAC | 4 cut(s) | 169, 816, 1242, 1489 |
| HpyAV | CCTTC | 6 cut(s) | 422, 530, 606, 740, 964, 1174 |
| HpyCH4III | ACNGT | 9 cut(s) | 181, 629, 839, 957, 1024, 1194, 1351, 1370, 1424 |
| HpyCH4IV | ACGT | 2 cut(s) | 1238, 1244 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 432, 856, 1062, 1454 |
| HpyF3I | CTNAG | 2 cut(s) | 6, 1432 |
| HpySE526I | ACGT | 2 cut(s) | 1238, 1244 |
| Hsp92II | CATG | 8 cut(s) | 314, 367, 873, 982, 1015, 1090, 1177, 1282 |
| HspAI | GCGC | 1 cut(s) | 751 |
| Kpn2I | TCCGGA | 1 cut(s) | 1377 |
| Kzo9I | GATC | 2 cut(s) | 652, 1333 |
| LguI | GCTCTTC | 1 cut(s) | 467 |
| LmnI | GCTCC | 2 cut(s) | 577, 1380 |
| Lsp1109I | GCAGC | 1 cut(s) | 1105 |
| LweI | GCATC | 1 cut(s) | 694 |
| MaeII | ACGT | 2 cut(s) | 1238, 1244 |
| MaeIII | GTNAC | 4 cut(s) | 1024, 1082, 1324, 1339 |
| MalI | GATC | 2 cut(s) | 654, 1335 |
| MboI | GATC | 2 cut(s) | 652, 1333 |
| MboII | GAAGA | 6 cut(s) | 43, 242, 277, 484, 1189, 1324 |
| MhlI | GDGCHC | 1 cut(s) | 701 |
| MluCI | AATT | 5 cut(s) | 455, 922, 961, 1146, 1395 |
| MlyI | GAGTC | 1 cut(s) | 692 |
| MmeI | TCCRAC | 1 cut(s) | 441 |
| MroI | TCCGGA | 1 cut(s) | 1377 |
| MroXI | GAANNNNTTC | 1 cut(s) | 306 |
| MseI | TTAA | 3 cut(s) | 36, 894, 1250 |
| MslI | CAYNNNNRTG | 1 cut(s) | 182 |
| MspI | CCGG | 2 cut(s) | 690, 1378 |
| Mva1269I | GAATGC | 2 cut(s) | 16, 999 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 432, 856, 1062, 1454 |
| NdeI | CATATG | 1 cut(s) | 657 |
| NdeII | GATC | 2 cut(s) | 652, 1333 |
| NlaIII | CATG | 8 cut(s) | 314, 367, 873, 982, 1015, 1090, 1177, 1282 |
| NlaIV | GGNNCC | 2 cut(s) | 489, 1376 |
| NmuCI | GTSAC | 2 cut(s) | 1024, 1339 |
| NspI | RCATGY | 2 cut(s) | 367, 1090 |
| NspV | TTCGAA | 1 cut(s) | 132 |
| PceI | AGGCCT | 1 cut(s) | 974 |
| PciI | ACATGT | 1 cut(s) | 1086 |
| PciSI | GCTCTTC | 1 cut(s) | 467 |
| PctI | GAATGC | 2 cut(s) | 16, 999 |
| PdmI | GAANNNNTTC | 1 cut(s) | 306 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1479 |
| PkrI | GCNGC | 1 cut(s) | 1120 |
| PleI | GAGTC | 1 cut(s) | 691 |
| PpsI | GAGTC | 1 cut(s) | 691 |
| Ppu21I | YACGTR | 2 cut(s) | 1239, 1245 |
| PscI | ACATGT | 1 cut(s) | 1086 |
| PsiI | TTATAA | 4 cut(s) | 402, 822, 927, 938 |
| PspFI | CCCAGC | 1 cut(s) | 1151 |
| PspN4I | GGNNCC | 2 cut(s) | 489, 1376 |
| PspPI | GGNCC | 1 cut(s) | 152 |
| PstI | CTGCAG | 3 cut(s) | 219, 289, 1123 |
| RsaI | GTAC | 3 cut(s) | 202, 1191, 1367 |
| RsaNI | GTAC | 3 cut(s) | 201, 1190, 1366 |
| RseI | CAYNNNNRTG | 1 cut(s) | 182 |
| SapI | GCTCTTC | 1 cut(s) | 467 |
| SaqAI | TTAA | 3 cut(s) | 36, 894, 1250 |
| SatI | GCNGC | 1 cut(s) | 1119 |
| Sau3AI | GATC | 2 cut(s) | 652, 1333 |
| Sau96I | GGNCC | 1 cut(s) | 152 |
| SchI | GAGTC | 1 cut(s) | 692 |
| SduI | GDGCHC | 1 cut(s) | 701 |
| SfaNI | GCATC | 1 cut(s) | 694 |
| SfcI | CTRYAG | 5 cut(s) | 215, 285, 610, 1119, 1369 |
| SfuI | TTCGAA | 1 cut(s) | 132 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 182 |
| SmlI | CTYRAG | 3 cut(s) | 50, 83, 766 |
| SmoI | CTYRAG | 3 cut(s) | 50, 83, 766 |
| Sse9I | AATT | 5 cut(s) | 455, 922, 961, 1146, 1395 |
| SseBI | AGGCCT | 1 cut(s) | 974 |
| SspI | AATATT | 1 cut(s) | 1384 |
| StuI | AGGCCT | 1 cut(s) | 974 |
| TaaI | ACNGT | 9 cut(s) | 181, 629, 839, 957, 1024, 1194, 1351, 1370, 1424 |
| TaiI | ACGT | 2 cut(s) | 1241, 1247 |
| TaqI | TCGA | 1 cut(s) | 132 |
| TasI | AATT | 5 cut(s) | 455, 922, 961, 1146, 1395 |
| TatI | WGTACW | 1 cut(s) | 200 |
| Tru1I | TTAA | 3 cut(s) | 36, 894, 1250 |
| Tru9I | TTAA | 3 cut(s) | 36, 894, 1250 |
| TscAI | CASTG | 4 cut(s) | 219, 294, 1354, 1429 |
| TseFI | GTSAC | 2 cut(s) | 1024, 1339 |
| TseI | GCWGC | 1 cut(s) | 1118 |
| Tsp45I | GTSAC | 2 cut(s) | 1024, 1339 |
| TspRI | CASTG | 4 cut(s) | 219, 294, 1354, 1429 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1479 |
| XapI | RAATTY | 1 cut(s) | 961 |
| XceI | RCATGY | 2 cut(s) | 367, 1090 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 867, 1456 |
| XmiI | GTMKAC | 2 cut(s) | 815, 1241 |
| XmnI | GAANNNNTTC | 1 cut(s) | 306 |