Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0009405

Physical Location & Seq

Genomic Coordinates Reverse (-)

47423911 .. 47429238

Gene Structure 5328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025664

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2157 bp

ATGGTGGCTCGGAGCTTCCAGGTCCGCCACAAAGACTCCGATTTCACCGTCGTTTACGACACCGACGACGGCCTCGAAGTTCTGAAATACCAGCTCTTCTCTCTCACGTCTGTACCTCCTGATGAGCAAAAGATCATCGGAGCCGACGACGATCGCGTCGTTTCGGATGATTCGGACCTGGTTGCGATCTCCGAGAAGCTCCGGTTGGTTTCGATCAGCGAAGAGGAACCGGAATCGACGGCCGGGAATGAGGAATTGCTGAAATCCGATGAGGAATTGGCCAGAATGTTGCAGGCGGAGGAGGAGGCGCTTATGTATCAGCAATACGCTGTTCCTGAAGATAATGGAGCATTTGAGCAAAGAGTGCGGCCTTATGTCAGTCAAGTTCTTCTGTATGAGACTGCGATACGCCAGGAGGCTGCTAGGAAAACAGTCCCTGTAGAACAGCTCGAGGAGAAGGCATTGGTCAGTTTGGCCAAGGAGGGGAACTTAACTCCATCAAAGAATGAACAAGATCATGCGTTCCTGCTGCAGCTGCTTTTCTGGTTCAAACAATCCTTCAGGTGGGTTAATGAACCTCCCTGTGATGGTTGCGGCAAGAAAACTATCAGCGTTGGTATGGATGTTGCACTTCTTCATCAAGGTTCTCGAGTTGAAGTTTATAGATGCAATTCTTGCCCAGCAGAGACTCGTTTCCCACGCTACAATGATCCACTAAAGCTTCTGGAAACTAGAAGGGGTCGTTGTGGGGAATGGGCAAATTGCTTCACGCTTTATTGCCGAGCTTTTGGGTATGAATCACGCCTGATCCTGGATTTCACAGATCATGTTTGGACAGAGTGCTTCTCAGAATCTTTAGGAAGATGGATGCATCTTGATCCTTGTGAAGGAGTGTATGACAAACCACTGTTATATGAAAGCGGGTGGAACAAGAAATTAAATTATGTGATTGCCATTGGGAAGGATGGAGTATGTGATGTAACTAAACGCTACACAAGGAAGTGGCATGAGGTTCTTTCTCGACGTAACATTATTGCAGAGCCTGCAGTGTCATCTGTGCTTGCTAATATAACAAAAGAATGTAGGAGAGGCTATACTTCTCAAGTGCGTTCTGCACTTGAAGACCGTGATGAGAAGGAAAGACAACAACTTGAGAGAGATTTACATTCTACAGACGATGCCTCAACCTCATTACCTGGAAGACGAAGTGGGGACAAGGAATGGCGCAAGTCAAGAATGGAAGATGGCTCTAATGAGAGTTGCTCCTTAACTGGTTCTTCTTGTCCACTTCGTCAATGTGTGGACGAGCATGTGACAAAAATTTACAATGGTTTTTTTCCAATTCTTTCAGAGTTGGCTAATGAAGGTTTTCCGAAGTCAAGGGCAGTTGAAGTACTGGAGATTCTTAAAGAAATTCTCATAAATCTTAAGAAATCCCCTTTCAAAACAAGGAGGGTGTCAATAGATTCAGTTCCAAATATCAGCCAGTCTGTCGTTCAACAGTTGTTGCCCTCTTTCACCAAGTTACTCAGTGCTCTTTCATTGAGTAGCCAGGCAGATACTGATGGGAGGGTTGTCATTTCTTTGGCTGGACCTCCTGTTAAAACCTCTATGACACTGCCTGTTACATTCCATGCTTTGGACGTTACGATCCGTAATCTCAAAAGTTGTGAAAACTTTGTTAAAGATTCTCTGTGCTTGCCGCTTCTTAAGTTAAACAGAATACATTCCGGTGTAGTCCGTGCAAGTGGAGAAGAAATTCCTTTTGGAATTGCCACATCAGCTTTTGATGGGACACGCATGTCCAAGTGGGAAGAACCAAATGGTGCAGAAGGTTGTTGGATCATGTATAAAGTATCGGATAACCAGATGCACGAACTGGTGGCATATGAGTTGATGTCAGCCAATGATGCACCTGAAAGAGATCCAATGGATTGGGTTGTCGAGGGAAGCAGTGATGGGGGGTCAAGCTGGCATCCATTAGATAAGCAAACTTCTCAACTGTTTGACAGTCGTTTTCAGTGTAGAACATTTAAAGTTTCATCTGAAGGTTTCCTATCAAATGCTTTCAGGTTCAGATTTTTGAGGGTTCGTGATATCCAATCAAATTCGCGGCTGCAATTAGGCAGCATTGATCTCTATTCTAGAAGCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000224 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006515 GO:0006516 GO:0006517 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009100 GO:0009636 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010035 GO:0010188 GO:0010193 GO:0014070 GO:0016787 GO:0016810 GO:0016811 GO:0019538 GO:0030163 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0050896 GO:0051603 GO:0071704 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Rad4 Transglut_core

Protein Analysis

719

Amino Acids

81.43

Weight (kDa)

5.43

Isoelectric Point (pI)

54.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transglut_core	PF01841	216 - 294	1.2e-16	Transglutaminase-like superfamily
Rad4	PF03835	276 - 384	1.7e-11	Rad4 transglutaminase-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009405)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49570
fragaria_vesca	FvH4_6g03130 FvH4_6g03130
malus_domestica	MD12G1238800.v1.1
prunus_persica	Prupe.6G341700_v2.0.a1 Prupe.6G341700_v2.0.a1 Prupe.6G341700_v2.0.a1 Prupe.6G341700_v2.0.a1 Prupe.6G341700_v2.0.a1
pyrus_communis	pycom12g21950
rosa_chinensis	RchiOBHm_Chr3g0451381
rosa_laevigata	RLG00000025664
rosa_multiflora	Rmu_sc0002575.1_g000005 Rmu_sc0012229.1_g000001
rosa_roxburghii	Rroxscaffold_164G00436540 Rroxscaffold_6G00428800
rosa_rugosa	Rorug02G0633400
rosa_samantha	Rh3AG036400 Rh3BG037000 Rh3CG035600 Rh3DG036500
rosa_wichuraiana	Rw3G002680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	155, 1801
AccB7I	CCANNNNNTGG	1 cut(s)	1639
AccII	CGCG	2 cut(s)	156, 2113
AciI	CCGC	7 cut(s)	25, 296, 367, 594, 921, 1703, 2113
AclWI	GGATC	6 cut(s)	704, 802, 872, 1645, 1850, 1919
AcoI	YGGCCR	3 cut(s)	240, 279, 474
AcsI	RAATTY	4 cut(s)	1320, 1413, 1758, 2107
AcuI	CTGAAG	3 cut(s)	357, 544, 2067
AfaI	GTAC	2 cut(s)	114, 1395
AfiI	CCNNNNNNNGG	6 cut(s)	483, 564, 587, 811, 887, 1639
AflII	CTTAAG	2 cut(s)	1427, 1709
AgsI	TTSAA	6 cut(s)	550, 656, 1121, 1391, 1444, 1499
AjiI	CACGTC	1 cut(s)	108
AjnI	CCWGG	6 cut(s)	18, 177, 411, 810, 1195, 1551
AjuI	GAANNNNNNNTTGG	4 cut(s)	188, 220, 1749, 1781
AluBI	AGCT	9 cut(s)	15, 94, 199, 448, 535, 721, 785, 1784, 1971
AluI	AGCT	9 cut(s)	15, 94, 199, 448, 535, 721, 785, 1784, 1971
Alw21I	GWGCWC	1 cut(s)	1537
Alw26I	GTCTC	2 cut(s)	392, 680
AlwI	GGATC	6 cut(s)	704, 802, 872, 1645, 1850, 1919
AlwNI	CAGNNNCTG	3 cut(s)	437, 1043, 1562
Ama87I	CYCGRG	2 cut(s)	449, 648
AoxI	GGCC	5 cut(s)	70, 240, 279, 368, 474
ApeKI	GCWGC	6 cut(s)	419, 529, 532, 535, 2116, 2127
ApoI	RAATTY	4 cut(s)	1320, 1413, 1758, 2107
Asp700I	GAANNNNTTC	3 cut(s)	1368, 1726, 1758
AspLEI	GCGC	2 cut(s)	310, 1227
AspS9I	GGNCC	3 cut(s)	22, 175, 1592
AsuC2I	CCSGG	1 cut(s)	244
AsuHPI	GGTGA	2 cut(s)	37, 1510
AvaI	CYCGRG	2 cut(s)	449, 648
AvaII	GGWCC	3 cut(s)	22, 175, 1592
BaeI	ACNNNNGTAYC	2 cut(s)	96, 129
BalI	TGGCCA	2 cut(s)	281, 476
BbsI	GAAGAC	2 cut(s)	1128, 1207
Bbv12I	GWGCWC	1 cut(s)	1537
BbvI	GCAGC	6 cut(s)	406, 516, 522, 544, 2103, 2139
BccI	CCATC	8 cut(s)	505, 581, 858, 959, 1238, 1559, 1784, 1952
BceAI	ACGGC	2 cut(s)	85, 255
BciT130I	CCWGG	6 cut(s)	20, 179, 413, 812, 1197, 1553
BcnI	CCSGG	1 cut(s)	244
BcoDI	GTCTC	2 cut(s)	392, 680
BfaI	CTAG	3 cut(s)	423, 732, 2145
BfmI	CTRYAG	4 cut(s)	438, 530, 1044, 1170
BfoI	RGCGCY	1 cut(s)	311
BfrI	CTTAAG	2 cut(s)	1427, 1709
BmcAI	AGTACT	1 cut(s)	1395
Bme1390I	CCNGG	7 cut(s)	20, 179, 244, 413, 812, 1197, 1553
Bme18I	GGWCC	3 cut(s)	22, 175, 1592
BmeT110I	CYCGRG	2 cut(s)	449, 648
BmgBI	CACGTC	1 cut(s)	108
BmgT120I	GGNCC	3 cut(s)	22, 175, 1592
BmiI	GGNNCC	2 cut(s)	142, 228
BmrFI	CCNGG	7 cut(s)	20, 179, 244, 413, 812, 1197, 1553
BmsI	GCATC	7 cut(s)	656, 858, 880, 1168, 1860, 1900, 1984
BpiI	GAAGAC	2 cut(s)	1128, 1207
BplI	GAGNNNNNCTC	4 cut(s)	830, 862, 1247, 1279
BpmI	CTGGAG	1 cut(s)	1418
BpuEI	CTTGAG	2 cut(s)	1086, 1172
BpuMI	CCSGG	1 cut(s)	244
BsaJI	CCNNGG	1 cut(s)	477
BsaWI	WCCGGW	3 cut(s)	201, 229, 1730
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	6 cut(s)	483, 564, 587, 811, 887, 1639
Bse1I	ACTGG	4 cut(s)	1276, 1401, 1486, 1884
BseBI	CCWGG	6 cut(s)	20, 179, 413, 812, 1197, 1553
BseDI	CCNNGG	1 cut(s)	477
BseGI	GGATG	5 cut(s)	172, 628, 873, 970, 1975
BseLI	CCNNNNNNNGG	6 cut(s)	483, 564, 587, 811, 887, 1639
BseMII	CTCAG	2 cut(s)	861, 1543
BseNI	ACTGG	4 cut(s)	1276, 1401, 1486, 1884
BseRI	GAGGAG	3 cut(s)	314, 317, 467
BseX3I	CGGCCG	1 cut(s)	240
BseXI	GCAGC	6 cut(s)	406, 516, 522, 544, 2103, 2139
BseYI	CCCAGC	1 cut(s)	679
BsgI	GTGCAG	2 cut(s)	1098, 1848
Bsh1236I	CGCG	2 cut(s)	156, 2113
Bsh1285I	CGRYCG	2 cut(s)	154, 243
BshFI	GGCC	5 cut(s)	72, 242, 281, 370, 476
BsiEI	CGRYCG	2 cut(s)	154, 243
BsiHKAI	GWGCWC	1 cut(s)	1537
BsiHKCI	CYCGRG	2 cut(s)	449, 648
BsiSI	CCGG	4 cut(s)	202, 230, 243, 1731
BslFI	GGGAC	3 cut(s)	419, 1226, 1807
BslI	CCNNNNNNNGG	6 cut(s)	483, 564, 587, 811, 887, 1639
BsmAI	GTCTC	2 cut(s)	392, 680
BsmFI	GGGAC	3 cut(s)	419, 1226, 1807
BsnI	GGCC	5 cut(s)	72, 242, 281, 370, 476
BsoBI	CYCGRG	2 cut(s)	449, 648
Bsp1286I	GDGCHC	1 cut(s)	1537
BspACI	CCGC	7 cut(s)	25, 296, 367, 594, 921, 1703, 2113
BspANI	GGCC	5 cut(s)	72, 242, 281, 370, 476
BspCNI	CTCAG	2 cut(s)	860, 1542
BspFNI	CGCG	2 cut(s)	156, 2113
BspLI	GGNNCC	2 cut(s)	142, 228
BspMAI	CTGCAG	2 cut(s)	534, 1048
BspPI	GGATC	6 cut(s)	704, 802, 872, 1645, 1850, 1919
BspQI	GCTCTTC	1 cut(s)	101
BspTI	CTTAAG	2 cut(s)	1427, 1709
BsrI	ACTGG	4 cut(s)	1276, 1401, 1486, 1884
BssECI	CCNNGG	1 cut(s)	477
BssT1I	CCWWGG	1 cut(s)	477
Bst2UI	CCWGG	6 cut(s)	20, 179, 413, 812, 1197, 1553
Bst4CI	ACNGT	7 cut(s)	49, 433, 909, 1127, 1503, 2004, 2012
Bst6I	CTCTTC	2 cut(s)	101, 216
BstAFI	CTTAAG	2 cut(s)	1427, 1709
BstAPI	GCANNNNNTGC	3 cut(s)	364, 675, 1043
BstC8I	GCNNGC	5 cut(s)	294, 1044, 1062, 1700, 1973
BstDEI	CTNAG	2 cut(s)	847, 1529
BstENI	CCTNNNNNAGG	1 cut(s)	885
BstF5I	GGATG	5 cut(s)	172, 628, 873, 970, 1975
BstFNI	CGCG	2 cut(s)	156, 2113
BstH2I	RGCGCY	1 cut(s)	311
BstHHI	GCGC	2 cut(s)	310, 1227
BstMAI	GTCTC	2 cut(s)	392, 680
BstMCI	CGRYCG	2 cut(s)	154, 243
BstMWI	GCNNNNNNNGC	6 cut(s)	364, 535, 675, 1043, 1781, 1910
BstNI	CCWGG	6 cut(s)	20, 179, 413, 812, 1197, 1553
BstNSI	RCATGY	2 cut(s)	1313, 1804
BstSCI	CCNGG	7 cut(s)	18, 177, 242, 411, 810, 1195, 1551
BstSFI	CTRYAG	4 cut(s)	438, 530, 1044, 1170
BstUI	CGCG	2 cut(s)	156, 2113
BstV1I	GCAGC	6 cut(s)	406, 516, 522, 544, 2103, 2139
BstV2I	GAAGAC	2 cut(s)	1128, 1207
BstX2I	RGATCY	1 cut(s)	1924
BstXI	CCANNNNNNTGG	1 cut(s)	1935
BstYI	RGATCY	1 cut(s)	1924
BstZI	CGGCCG	1 cut(s)	240
BsuRI	GGCC	5 cut(s)	72, 242, 281, 370, 476
BtrI	CACGTC	1 cut(s)	108
BtsCI	GGATG	5 cut(s)	172, 628, 873, 970, 1975
BtsI	GCAGTG	3 cut(s)	1053, 1616, 1960
BtsIMutI	CAGTG	6 cut(s)	905, 1053, 1537, 1616, 1960, 2027
Cac8I	GCNNGC	5 cut(s)	294, 1044, 1062, 1700, 1973
CaiI	CAGNNNCTG	3 cut(s)	437, 1043, 1562
CfoI	GCGC	2 cut(s)	310, 1227
Cfr13I	GGNCC	3 cut(s)	22, 175, 1592
CseI	GACGC	1 cut(s)	145
CsiI	ACCWGGT	1 cut(s)	177
Csp6I	GTAC	2 cut(s)	113, 1394
CviAII	CATG	7 cut(s)	518, 827, 1007, 1310, 1634, 1801, 1846
CviQI	GTAC	2 cut(s)	113, 1394
DdeI	CTNAG	2 cut(s)	847, 1529
DraI	TTTAAA	1 cut(s)	2035
DrdI	GACNNNNNNGTC	2 cut(s)	155, 1801
DseDI	GACNNNNNNGTC	2 cut(s)	155, 1801
EaeI	YGGCCR	3 cut(s)	240, 279, 474
EagI	CGGCCG	1 cut(s)	240
Eam1104I	CTCTTC	2 cut(s)	101, 216
EarI	CTCTTC	2 cut(s)	101, 216
EciI	GGCGGA	2 cut(s)	14, 311
EclXI	CGGCCG	1 cut(s)	240
Eco130I	CCWWGG	1 cut(s)	477
Eco32I	GATATC	1 cut(s)	2098
Eco47I	GGWCC	3 cut(s)	22, 175, 1592
Eco52I	CGGCCG	1 cut(s)	240
Eco57I	CTGAAG	3 cut(s)	357, 544, 2067
Eco88I	CYCGRG	2 cut(s)	449, 648
EcoNI	CCTNNNNNAGG	1 cut(s)	885
EcoRII	CCWGG	6 cut(s)	18, 177, 411, 810, 1195, 1551
EcoRV	GATATC	1 cut(s)	2098
EcoT14I	CCWWGG	1 cut(s)	477
EcoT22I	ATGCAT	1 cut(s)	873
ErhI	CCWWGG	1 cut(s)	477
FaeI	CATG	7 cut(s)	521, 830, 1010, 1313, 1637, 1804, 1849
FaqI	GGGAC	3 cut(s)	419, 1226, 1807
FatI	CATG	7 cut(s)	517, 826, 1006, 1309, 1633, 1800, 1845
FauI	CCCGC	1 cut(s)	914
FauNDI	CATATG	1 cut(s)	1888
FokI	GGATG	5 cut(s)	179, 635, 880, 977, 1962
FspBI	CTAG	3 cut(s)	423, 732, 2145
GlaI	GCGC	2 cut(s)	309, 1226
GsaI	CCCAGC	1 cut(s)	683
GsuI	CTGGAG	1 cut(s)	1418
HaeII	RGCGCY	1 cut(s)	311
HaeIII	GGCC	5 cut(s)	72, 242, 281, 370, 476
HapII	CCGG	4 cut(s)	202, 230, 243, 1731
HgaI	GACGC	1 cut(s)	145
HhaI	GCGC	2 cut(s)	310, 1227
Hin1II	CATG	7 cut(s)	521, 830, 1010, 1313, 1637, 1804, 1849
Hin6I	GCGC	2 cut(s)	308, 1225
HinP1I	GCGC	2 cut(s)	308, 1225
HindIII	AAGCTT	1 cut(s)	719
HinfI	GANTC	9 cut(s)	35, 170, 233, 688, 797, 851, 1402, 1466, 1688
HpaII	CCGG	4 cut(s)	202, 230, 243, 1731
HphI	GGTGA	2 cut(s)	37, 1510
Hpy166II	GTNNAC	3 cut(s)	55, 1286, 1303
Hpy188III	TCNNGA	9 cut(s)	119, 335, 648, 725, 875, 1020, 1233, 2093, 2145
Hpy8I	GTNNAC	3 cut(s)	55, 1286, 1303
Hpy99I	CGWCG	8 cut(s)	53, 68, 71, 149, 152, 161, 241, 1026
HpyAV	CCTTC	9 cut(s)	451, 568, 729, 881, 955, 1129, 1358, 1826, 2042
HpyCH4III	ACNGT	7 cut(s)	49, 433, 909, 1127, 1503, 2004, 2012
HpyCH4IV	ACGT	3 cut(s)	107, 1024, 1644
HpyF10VI	GCNNNNNNNGC	6 cut(s)	364, 535, 675, 1043, 1781, 1910
HpyF3I	CTNAG	2 cut(s)	847, 1529
HpySE526I	ACGT	3 cut(s)	107, 1024, 1644
Hsp92II	CATG	7 cut(s)	521, 830, 1010, 1313, 1637, 1804, 1849
HspAI	GCGC	2 cut(s)	308, 1225
LguI	GCTCTTC	1 cut(s)	101
LmnI	GCTCC	5 cut(s)	12, 140, 204, 347, 1268
Lsp1109I	GCAGC	6 cut(s)	406, 516, 522, 544, 2103, 2139
LweI	GCATC	7 cut(s)	656, 858, 880, 1168, 1860, 1900, 1984
MabI	ACCWGGT	1 cut(s)	177
MaeI	CTAG	3 cut(s)	423, 732, 2145
MaeII	ACGT	3 cut(s)	107, 1024, 1644
MaeIII	GTNAC	6 cut(s)	979, 1025, 1312, 1524, 1624, 1645
MflI	RGATCY	1 cut(s)	1924
MhlI	GDGCHC	1 cut(s)	1537
MlsI	TGGCCA	2 cut(s)	281, 476
MluNI	TGGCCA	2 cut(s)	281, 476
MlyI	GAGTC	2 cut(s)	29, 682
MmeI	TCCRAC	1 cut(s)	1820
Mox20I	TGGCCA	2 cut(s)	281, 476
Mph1103I	ATGCAT	1 cut(s)	873
MroXI	GAANNNNTTC	3 cut(s)	1368, 1726, 1758
MscI	TGGCCA	2 cut(s)	281, 476
MslI	CAYNNNNRTG	1 cut(s)	1731
Msp20I	TGGCCA	2 cut(s)	281, 476
MspA1I	CMGCKG	1 cut(s)	535
MspCI	CTTAAG	2 cut(s)	1427, 1709
MspI	CCGG	4 cut(s)	202, 230, 243, 1731
MspR9I	CCNGG	7 cut(s)	20, 179, 244, 413, 812, 1197, 1553
MvaI	CCWGG	6 cut(s)	20, 179, 413, 812, 1197, 1553
MvnI	CGCG	2 cut(s)	156, 2113
MwoI	GCNNNNNNNGC	6 cut(s)	364, 535, 675, 1043, 1781, 1910
NciI	CCSGG	1 cut(s)	244
NdeI	CATATG	1 cut(s)	1888
NlaIII	CATG	7 cut(s)	521, 830, 1010, 1313, 1637, 1804, 1849
NlaIV	GGNNCC	2 cut(s)	142, 228
NmeAIII	GCCGAG	1 cut(s)	806
NmuCI	GTSAC	1 cut(s)	1312
NsiI	ATGCAT	1 cut(s)	873
NspI	RCATGY	2 cut(s)	1313, 1804
PaeR7I	CTCGAG	2 cut(s)	449, 648
PciSI	GCTCTTC	1 cut(s)	101
PcsI	WCGNNNNNNNCGW	5 cut(s)	63, 72, 144, 153, 156
PdmI	GAANNNNTTC	3 cut(s)	1368, 1726, 1758
PfeI	GAWTC	7 cut(s)	170, 233, 797, 851, 1402, 1466, 1688
PflMI	CCANNNNNTGG	1 cut(s)	1639
PfoI	TCCNGGA	1 cut(s)	810
Ple19I	CGATCG	1 cut(s)	154
PleI	GAGTC	2 cut(s)	29, 682
PpsI	GAGTC	2 cut(s)	29, 682
Psp6I	CCWGG	6 cut(s)	18, 177, 411, 810, 1195, 1551
PspFI	CCCAGC	1 cut(s)	679
PspGI	CCWGG	6 cut(s)	18, 177, 411, 810, 1195, 1551
PspN4I	GGNNCC	2 cut(s)	142, 228
PspPI	GGNCC	3 cut(s)	22, 175, 1592
PspXI	VCTCGAGB	1 cut(s)	449
PstI	CTGCAG	2 cut(s)	534, 1048
PstNI	CAGNNNCTG	3 cut(s)	437, 1043, 1562
PsuI	RGATCY	1 cut(s)	1924
PvuI	CGATCG	1 cut(s)	154
PvuII	CAGCTG	1 cut(s)	535
RsaI	GTAC	2 cut(s)	114, 1395
RsaNI	GTAC	2 cut(s)	113, 1394
RseI	CAYNNNNRTG	1 cut(s)	1731
SapI	GCTCTTC	1 cut(s)	101
Sau96I	GGNCC	3 cut(s)	22, 175, 1592
ScaI	AGTACT	1 cut(s)	1395
SchI	GAGTC	2 cut(s)	29, 682
ScrFI	CCNGG	7 cut(s)	20, 179, 244, 413, 812, 1197, 1553
SduI	GDGCHC	1 cut(s)	1537
SexAI	ACCWGGT	1 cut(s)	177
SfaNI	GCATC	7 cut(s)	656, 858, 880, 1168, 1860, 1900, 1984
SfcI	CTRYAG	4 cut(s)	438, 530, 1044, 1170
Sfr274I	CTCGAG	2 cut(s)	449, 648
SinI	GGWCC	3 cut(s)	22, 175, 1592
SlaI	CTCGAG	2 cut(s)	449, 648
SmiMI	CAYNNNNRTG	1 cut(s)	1731
SmlI	CTYRAG	6 cut(s)	449, 648, 1101, 1151, 1427, 1709
SmoI	CTYRAG	6 cut(s)	449, 648, 1101, 1151, 1427, 1709
SsiI	CCGC	7 cut(s)	25, 296, 367, 594, 921, 1703, 2113
SspMI	CTAG	3 cut(s)	423, 732, 2145
StyD4I	CCNGG	7 cut(s)	18, 177, 242, 411, 810, 1195, 1551
StyI	CCWWGG	1 cut(s)	477
TaaI	ACNGT	7 cut(s)	49, 433, 909, 1127, 1503, 2004, 2012
TaiI	ACGT	3 cut(s)	110, 1027, 1647
TaqI	TCGA	7 cut(s)	75, 212, 236, 450, 649, 1021, 1944
TatI	WGTACW	1 cut(s)	1393
TauI	GCSGC	4 cut(s)	370, 597, 1705, 2116
TfiI	GAWTC	7 cut(s)	170, 233, 797, 851, 1402, 1466, 1688
TscAI	CASTG	6 cut(s)	912, 1053, 1537, 1623, 1960, 2027
TseFI	GTSAC	1 cut(s)	1312
TseI	GCWGC	6 cut(s)	419, 529, 532, 535, 2116, 2127
Tsp45I	GTSAC	1 cut(s)	1312
TspDTI	ATGAA	8 cut(s)	522, 588, 626, 810, 930, 1377, 1530, 2031
TspGWI	ACGGA	2 cut(s)	1643, 1730
TspRI	CASTG	6 cut(s)	912, 1053, 1537, 1623, 1960, 2027
Van91I	CCANNNNNTGG	1 cut(s)	1639
Vha464I	CTTAAG	2 cut(s)	1427, 1709
VpaK11BI	GGWCC	3 cut(s)	22, 175, 1592
XagI	CCTNNNNNAGG	1 cut(s)	885
XapI	RAATTY	4 cut(s)	1320, 1413, 1758, 2107
XbaI	TCTAGA	1 cut(s)	2144
XceI	RCATGY	2 cut(s)	1313, 1804
XhoI	CTCGAG	2 cut(s)	449, 648
XmnI	GAANNNNTTC	3 cut(s)	1368, 1726, 1758
XspI	CTAG	3 cut(s)	423, 732, 2145
ZrmI	AGTACT	1 cut(s)	1395
Zsp2I	ATGCAT	1 cut(s)	873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.