Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009405

Physical Location & Seq

Genomic Coordinates Reverse (-)

74767025 .. 74769150

Gene Structure 2126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0633400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGTGACCCAGAACACTGTACAGGGCGACCCAGGGCACGAAATACACTGTGCTCATGACCCAGAGGGTGATATTAACACTAAAAACTCCGCCGCAGCCGCCGCCGAGCAACCCCAATCTGACGGCGGCGAGTCTTCATCCTCCTCCTCCTTCACCTTCTCATACGAAGGCCAAGACAGCATACACAACATCAAGCCCTATTCTTCCGTTTCAAAGCACGAAACGGCGTCGTCGTGGGTGACGATGCCGATGTCGTTCATGACGGGGTCGGTGGTGGGGAAGAGGTTCTACAATCAAGTGACGACGAGGAAGGCCGACGACGGGAATGGATGGTCGGTGATGCTTGATTATCGGACGCTCAAGACTCCATCAAAGAGACCCTCAAAGCTTCCGACTTTGGGTTTAGCTAAGGTCATTGTTGCTGAGTGGGAATACCAGGAAACAGATGGCATTAGGCCCTTCACGATGCCTCTCATGAAGCTTGCTTGTACTGCACTGGAAAGAGTTCCTATCACACGGCATAAGGTTATAGAATACTTGATAAATAGATTCAATCAAGATTTAGTCTTTTGTCGCGCCCCGGATGACAATGAGCTGACAAGCGGCATCCATGAACGGCAAGTGGAAAAGATTGATCCATTACTTGATTGGTTGGAGTCTGAATTTGTCTTTAAGCATGTTGTTTACTCCTGCTTTTTTGGTGGAAAGCAGGAGGATGGACTTCTAAAAGCTGTAGAAACCCTACTGAAGAAAACAGATGAGTGTGAATTGGCAGCAATTGATGCTATTGCAGGAGAAGCACACTCCCTAACAATTGCTCTTGGATTATTTCGTGGGAAACTGCAGATTGAAGAAGCAATTGAGTTGATTAGACTTGAAGAAGATTTTCAGGTAGACAAGTGGGGTATTGTTGAAGGCGGTGATGATGTAGATATTGCTGATCTCAAAGTACAGATCGCATCAGCTGCTGTATTCCTAGGTCTTTCAAGGAGGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000224 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006515 GO:0006516 GO:0006517 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009100 GO:0009636 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010035 GO:0010188 GO:0010193 GO:0014070 GO:0016787 GO:0016810 GO:0016811 GO:0019538 GO:0030163 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0050896 GO:0051603 GO:0071704 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Rad4 Transglut_core

Protein Analysis

332

Amino Acids

36.84

Weight (kDa)

5.02

Isoelectric Point (pI)

42.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP12	PF07542	94 - 219	1.2e-28	ATP12 chaperone protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009405)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49570
fragaria_vesca	FvH4_6g03130 FvH4_6g03130
malus_domestica	MD12G1238800.v1.1
prunus_persica	Prupe.6G341700_v2.0.a1 Prupe.6G341700_v2.0.a1 Prupe.6G341700_v2.0.a1 Prupe.6G341700_v2.0.a1 Prupe.6G341700_v2.0.a1
pyrus_communis	pycom12g21950
rosa_chinensis	RchiOBHm_Chr3g0451381
rosa_laevigata	RLG00000025664
rosa_multiflora	Rmu_sc0002575.1_g000005 Rmu_sc0012229.1_g000001
rosa_roxburghii	Rroxscaffold_164G00436540 Rroxscaffold_6G00428800
rosa_rugosa	Rorug02G0633400
rosa_samantha	Rh3AG036400 Rh3BG037000 Rh3CG035600 Rh3DG036500
rosa_wichuraiana	Rw3G002680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	894
AccII	CGCG	1 cut(s)	576
AciI	CCGC	7 cut(s)	90, 93, 99, 102, 126, 603, 918
AclWI	GGATC	1 cut(s)	629
AcsI	RAATTY	1 cut(s)	662
AcuI	CTGAAG	1 cut(s)	767
AcyI	GRCGYC	1 cut(s)	227
AfaI	GTAC	3 cut(s)	21, 490, 951
AfiI	CCNNNNNNNGG	2 cut(s)	321, 398
AgsI	TTSAA	6 cut(s)	213, 553, 851, 878, 914, 987
AjnI	CCWGG	2 cut(s)	31, 435
AluBI	AGCT	6 cut(s)	388, 407, 481, 595, 731, 965
AluI	AGCT	6 cut(s)	388, 407, 481, 595, 731, 965
Alw21I	GWGCWC	1 cut(s)	55
Alw26I	GTCTC	1 cut(s)	370
AlwI	GGATC	1 cut(s)	629
AlwNI	CAGNNNCTG	1 cut(s)	968
AoxI	GGCC	3 cut(s)	169, 312, 455
ApeKI	GCWGC	3 cut(s)	95, 773, 965
ApoI	RAATTY	1 cut(s)	662
Asp700I	GAANNNNTTC	3 cut(s)	284, 504, 885
AspA2I	CCTAGG	1 cut(s)	976
AspLEI	GCGC	1 cut(s)	578
AspS9I	GGNCC	1 cut(s)	456
AsuC2I	CCSGG	1 cut(s)	581
AsuHPI	GGTGA	6 cut(s)	16, 80, 145, 250, 349, 932
AvrII	CCTAGG	1 cut(s)	976
BaeGI	GKGCMC	1 cut(s)	39
BarI	GAAGNNNNNNTAC	2 cut(s)	272, 304
BbsI	GAAGAC	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	55
BbvI	GCAGC	3 cut(s)	107, 785, 952
BccI	CCATC	4 cut(s)	324, 376, 440, 710
BceAI	ACGGC	4 cut(s)	139, 240, 533, 632
BciT130I	CCWGG	2 cut(s)	33, 437
BcnI	CCSGG	1 cut(s)	581
BcoDI	GTCTC	1 cut(s)	370
BfaI	CTAG	1 cut(s)	977
BfmI	CTRYAG	2 cut(s)	732, 842
BisI	GCNGC	8 cut(s)	93, 96, 99, 102, 127, 604, 774, 966
BlnI	CCTAGG	1 cut(s)	976
BlsI	GCNGC	8 cut(s)	94, 97, 100, 103, 128, 605, 775, 967
Bme1390I	CCNGG	3 cut(s)	33, 437, 581
BmgT120I	GGNCC	1 cut(s)	456
BmrFI	CCNGG	3 cut(s)	33, 437, 581
BmsI	GCATC	6 cut(s)	234, 330, 456, 615, 772, 968
BpiI	GAAGAC	1 cut(s)	126
Bpu10I	CCTNAGC	1 cut(s)	408
BpuEI	CTTGAG	1 cut(s)	344
BpuMI	CCSGG	1 cut(s)	581
BsaHI	GRCGYC	1 cut(s)	227
BsaI	GGTCTC	1 cut(s)	370
BsaJI	CCNNGG	4 cut(s)	31, 32, 579, 976
Bsc4I	CCNNNNNNNGG	2 cut(s)	321, 398
Bse1I	ACTGG	1 cut(s)	501
BseBI	CCWGG	2 cut(s)	33, 437
BseDI	CCNNGG	4 cut(s)	31, 32, 579, 976
BseGI	GGATG	5 cut(s)	137, 335, 589, 606, 721
BseLI	CCNNNNNNNGG	2 cut(s)	321, 398
BseMII	CTCAG	1 cut(s)	414
BseNI	ACTGG	1 cut(s)	501
BseRI	GAGGAG	2 cut(s)	133, 136
BseSI	GKGCMC	1 cut(s)	39
BseXI	GCAGC	3 cut(s)	107, 785, 952
BsgI	GTGCAG	1 cut(s)	477
Bsh1236I	CGCG	1 cut(s)	576
BshFI	GGCC	3 cut(s)	171, 314, 457
BsiHKAI	GWGCWC	1 cut(s)	55
BsiSI	CCGG	1 cut(s)	581
BslI	CCNNNNNNNGG	2 cut(s)	321, 398
BsmAI	GTCTC	1 cut(s)	370
BsnI	GGCC	3 cut(s)	171, 314, 457
Bso31I	GGTCTC	1 cut(s)	370
Bsp1286I	GDGCHC	2 cut(s)	39, 55
Bsp1407I	TGTACA	1 cut(s)	19
Bsp143I	GATC	3 cut(s)	634, 940, 954
BspACI	CCGC	7 cut(s)	90, 93, 99, 102, 126, 603, 918
BspANI	GGCC	3 cut(s)	171, 314, 457
BspCNI	CTCAG	1 cut(s)	415
BspFNI	CGCG	1 cut(s)	576
BspHI	TCATGA	3 cut(s)	55, 258, 474
BspMAI	CTGCAG	1 cut(s)	846
BspPI	GGATC	1 cut(s)	629
BspTNI	GGTCTC	1 cut(s)	370
BsrGI	TGTACA	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	501
BssECI	CCNNGG	4 cut(s)	31, 32, 579, 976
BssMI	GATC	3 cut(s)	634, 940, 954
BssNI	GRCGYC	1 cut(s)	227
BssT1I	CCWWGG	1 cut(s)	976
Bst2UI	CCWGG	2 cut(s)	33, 437
Bst4CI	ACNGT	2 cut(s)	19, 50
Bst6I	CTCTTC	1 cut(s)	275
BstACI	GRCGYC	1 cut(s)	227
BstAPI	GCANNNNNTGC	2 cut(s)	782, 965
BstAUI	TGTACA	1 cut(s)	19
BstC8I	GCNNGC	1 cut(s)	483
BstDEI	CTNAG	2 cut(s)	408, 423
BstEII	GGTNACC	1 cut(s)	4
BstF5I	GGATG	5 cut(s)	137, 335, 589, 606, 721
BstFNI	CGCG	1 cut(s)	576
BstHHI	GCGC	1 cut(s)	578
BstKTI	GATC	3 cut(s)	637, 943, 957
BstMAI	GTCTC	1 cut(s)	370
BstMBI	GATC	3 cut(s)	634, 940, 954
BstMWI	GCNNNNNNNGC	7 cut(s)	98, 101, 177, 491, 782, 797, 965
BstNI	CCWGG	2 cut(s)	33, 437
BstNSI	RCATGY	1 cut(s)	680
BstPI	GGTNACC	1 cut(s)	4
BstSCI	CCNGG	3 cut(s)	31, 435, 579
BstSFI	CTRYAG	2 cut(s)	732, 842
BstSLI	GKGCMC	1 cut(s)	39
BstUI	CGCG	1 cut(s)	576
BstV1I	GCAGC	3 cut(s)	107, 785, 952
BstV2I	GAAGAC	1 cut(s)	126
BsuRI	GGCC	3 cut(s)	171, 314, 457
BtsCI	GGATG	5 cut(s)	137, 335, 589, 606, 721
BtsIMutI	CAGTG	3 cut(s)	15, 46, 494
Cac8I	GCNNGC	1 cut(s)	483
CaiI	CAGNNNCTG	1 cut(s)	968
CciI	TCATGA	3 cut(s)	55, 258, 474
CfoI	GCGC	1 cut(s)	578
Cfr13I	GGNCC	1 cut(s)	456
CseI	GACGC	2 cut(s)	216, 364
Csp6I	GTAC	3 cut(s)	20, 489, 950
CviAII	CATG	5 cut(s)	56, 259, 475, 611, 677
CviQI	GTAC	3 cut(s)	20, 489, 950
DdeI	CTNAG	2 cut(s)	408, 423
DpnI	GATC	3 cut(s)	636, 942, 956
DpnII	GATC	3 cut(s)	634, 940, 954
Eam1104I	CTCTTC	1 cut(s)	275
EarI	CTCTTC	1 cut(s)	275
EciI	GGCGGA	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	976
Eco31I	GGTCTC	1 cut(s)	370
Eco57I	CTGAAG	1 cut(s)	767
Eco91I	GGTNACC	1 cut(s)	4
EcoO109I	RGGNCCY	1 cut(s)	456
EcoO65I	GGTNACC	1 cut(s)	4
EcoRII	CCWGG	2 cut(s)	31, 435
EcoT14I	CCWWGG	1 cut(s)	976
ErhI	CCWWGG	1 cut(s)	976
FaeI	CATG	5 cut(s)	59, 262, 478, 614, 680
FaiI	YATR	9 cut(s)	57, 163, 182, 260, 476, 522, 530, 612, 678
FatI	CATG	5 cut(s)	55, 258, 474, 610, 676
FblI	GTMKAC	1 cut(s)	894
Fnu4HI	GCNGC	8 cut(s)	93, 96, 99, 102, 127, 604, 774, 966
FokI	GGATG	5 cut(s)	124, 342, 593, 596, 728
Fsp4HI	GCNGC	8 cut(s)	93, 96, 99, 102, 127, 604, 774, 966
FspBI	CTAG	1 cut(s)	977
GlaI	GCGC	1 cut(s)	577
GluI	GCNGC	8 cut(s)	93, 96, 99, 102, 127, 604, 774, 966
HaeIII	GGCC	3 cut(s)	171, 314, 457
HapII	CCGG	1 cut(s)	581
HgaI	GACGC	2 cut(s)	216, 364
HhaI	GCGC	1 cut(s)	578
Hin1I	GRCGYC	1 cut(s)	227
Hin1II	CATG	5 cut(s)	59, 262, 478, 614, 680
Hin6I	GCGC	1 cut(s)	576
HinP1I	GCGC	1 cut(s)	576
HindIII	AAGCTT	2 cut(s)	386, 479
HinfI	GANTC	4 cut(s)	131, 364, 549, 656
HpaII	CCGG	1 cut(s)	581
HphI	GGTGA	6 cut(s)	16, 80, 145, 250, 349, 932
Hpy166II	GTNNAC	2 cut(s)	685, 895
Hpy188I	TCNGA	4 cut(s)	121, 354, 393, 661
Hpy188III	TCNNGA	6 cut(s)	56, 259, 361, 463, 475, 557
Hpy8I	GTNNAC	2 cut(s)	685, 895
Hpy99I	CGWCG	5 cut(s)	232, 235, 307, 320, 323
HpyAV	CCTTC	6 cut(s)	160, 161, 166, 304, 469, 908
HpyCH4III	ACNGT	2 cut(s)	19, 50
HpyCH4V	TGCA	3 cut(s)	494, 791, 844
HpyF10VI	GCNNNNNNNGC	7 cut(s)	98, 101, 177, 491, 782, 797, 965
HpyF3I	CTNAG	2 cut(s)	408, 423
Hsp92I	GRCGYC	1 cut(s)	227
Hsp92II	CATG	5 cut(s)	59, 262, 478, 614, 680
HspAI	GCGC	1 cut(s)	576
Kzo9I	GATC	3 cut(s)	634, 940, 954
Lsp1109I	GCAGC	3 cut(s)	107, 785, 952
LweI	GCATC	6 cut(s)	234, 330, 456, 615, 772, 968
MaeI	CTAG	1 cut(s)	977
MaeIII	GTNAC	3 cut(s)	4, 238, 298
MalI	GATC	3 cut(s)	636, 942, 956
MboI	GATC	3 cut(s)	634, 940, 954
MboII	GAAGA	7 cut(s)	126, 195, 292, 760, 863, 890, 893
MfeI	CAATTG	3 cut(s)	777, 813, 858
MhlI	GDGCHC	2 cut(s)	39, 55
MluCI	AATT	5 cut(s)	662, 767, 777, 813, 858
MlyI	GAGTC	3 cut(s)	140, 358, 665
MmeI	TCCRAC	2 cut(s)	416, 633
MroXI	GAANNNNTTC	3 cut(s)	284, 504, 885
MseI	TTAA	3 cut(s)	75, 672, 997
MspA1I	CMGCKG	1 cut(s)	965
MspI	CCGG	1 cut(s)	581
MspR9I	CCNGG	3 cut(s)	33, 437, 581
MunI	CAATTG	3 cut(s)	777, 813, 858
MvaI	CCWGG	2 cut(s)	33, 437
MvnI	CGCG	1 cut(s)	576
MwoI	GCNNNNNNNGC	7 cut(s)	98, 101, 177, 491, 782, 797, 965
NciI	CCSGG	1 cut(s)	581
NdeII	GATC	3 cut(s)	634, 940, 954
NlaIII	CATG	5 cut(s)	59, 262, 478, 614, 680
NmeAIII	GCCGAG	1 cut(s)	130
NmuCI	GTSAC	3 cut(s)	4, 238, 298
NspI	RCATGY	1 cut(s)	680
PagI	TCATGA	3 cut(s)	55, 258, 474
PasI	CCCWGGG	1 cut(s)	32
PcsI	WCGNNNNNNNCGW	2 cut(s)	230, 239
PdmI	GAANNNNTTC	3 cut(s)	284, 504, 885
PfeI	GAWTC	1 cut(s)	549
PflFI	GACNNNGTC	1 cut(s)	265
PkrI	GCNGC	8 cut(s)	94, 97, 100, 103, 128, 605, 775, 967
PleI	GAGTC	3 cut(s)	139, 358, 664
PpsI	GAGTC	3 cut(s)	139, 358, 664
Psp6I	CCWGG	2 cut(s)	31, 435
PspEI	GGTNACC	1 cut(s)	4
PspGI	CCWGG	2 cut(s)	31, 435
PspPI	GGNCC	1 cut(s)	456
PstI	CTGCAG	1 cut(s)	846
PstNI	CAGNNNCTG	1 cut(s)	968
PsyI	GACNNNGTC	1 cut(s)	265
PvuII	CAGCTG	1 cut(s)	965
RsaI	GTAC	3 cut(s)	21, 490, 951
RsaNI	GTAC	3 cut(s)	20, 489, 950
SaqAI	TTAA	3 cut(s)	75, 672, 997
SatI	GCNGC	8 cut(s)	93, 96, 99, 102, 127, 604, 774, 966
Sau3AI	GATC	3 cut(s)	634, 940, 954
Sau96I	GGNCC	1 cut(s)	456
SchI	GAGTC	3 cut(s)	140, 358, 665
ScrFI	CCNGG	3 cut(s)	33, 437, 581
SduI	GDGCHC	2 cut(s)	39, 55
SfaNI	GCATC	6 cut(s)	234, 330, 456, 615, 772, 968
SfcI	CTRYAG	2 cut(s)	732, 842
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	5 cut(s)	662, 767, 777, 813, 858
SsiI	CCGC	7 cut(s)	90, 93, 99, 102, 126, 603, 918
SspMI	CTAG	1 cut(s)	977
StyD4I	CCNGG	3 cut(s)	31, 435, 579
StyI	CCWWGG	1 cut(s)	976
TaaI	ACNGT	2 cut(s)	19, 50
TasI	AATT	5 cut(s)	662, 767, 777, 813, 858
TatI	WGTACW	3 cut(s)	19, 488, 949
TauI	GCSGC	5 cut(s)	95, 101, 104, 129, 606
TfiI	GAWTC	1 cut(s)	549
Tru1I	TTAA	3 cut(s)	75, 672, 997
Tru9I	TTAA	3 cut(s)	75, 672, 997
TscAI	CASTG	3 cut(s)	22, 53, 501
TseFI	GTSAC	3 cut(s)	4, 238, 298
TseI	GCWGC	3 cut(s)	95, 773, 965
Tsp45I	GTSAC	3 cut(s)	4, 238, 298
TspDTI	ATGAA	4 cut(s)	126, 247, 491, 627
TspGWI	ACGGA	1 cut(s)	196
TspRI	CASTG	3 cut(s)	22, 53, 501
Tth111I	GACNNNGTC	1 cut(s)	265
XapI	RAATTY	1 cut(s)	662
XceI	RCATGY	1 cut(s)	680
XcmI	CCANNNNNNNNNTGG	2 cut(s)	443, 645
XmaJI	CCTAGG	1 cut(s)	976
XmiI	GTMKAC	1 cut(s)	894
XmnI	GAANNNNTTC	3 cut(s)	284, 504, 885
XspI	CTAG	1 cut(s)	977

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.