Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0007686

Physical Location & Seq

Genomic Coordinates Forward (+)

16851493 .. 16857409

Gene Structure 5917 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027920

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3222 bp

ATGGCAGCAAATGTGGTAAGGATTGGAGAACTTAAGCAAAAGGATTGTGATCTCAAACTAGAGGGTAAAACATTGTTGGGGTTACCAGAGATGCGCACCGATAATTGTTGTACTAATATGGAGGAGAAGGATTTGAGTAAACGTGTAACCTCCTCATCTGGATACGAGTCACTCTGCAGAAGTCCTCGTTCCAGAACTGGCATTGCCCCTGATGCTCAAGAGTTAAAATTGAAATATCTAAGGAATCCAAACTCAGCTGATTATAGTCAGGTAGGAATTGGGTTTAGAAGTAAGGATTCACATGGTGATTCTGTGTCAGAAGATAATGATCAGATGTTGTTGAGAGTTAGACACGAGCTTAGAGAAATCCATTCTGGCATCAGGAGTCCGAAGCCTTCTTCAAGCAATTCCTCTGAGCAAGACCCTGATAAAATGTCAGCATATGTAAGGGCTAGGAACAGCAAGATCATCTCAAGCAATATGCTAAGTATTGCCAAAAACCATCTGAAGATCCAATCTCTTGTGAAGGAAACAGTTAAGGGTAAGGGTATCAGTGAAATCCCAGTTATGGACCAGAAGGTATCTTGCAATACAAGGTTGAAATCACTTAACCAAAATGGTCAGCATTCTTCACTTGTCCTTGATAGGTCTGGTCCAGAATCTATCAGTACTGGGATCTGCTTGAGGGAGTTTCTTGAACCCGGGCGTCACAAAGTAGATATAGCTGAAAGACTGCTCATATTTAGGCAGATTGTGGAGTTGGTGGATTATGCACATTATCAAGGTGTTGCCTTGCAAGAGTTGCGACCATCACGCTTCATTTTATTGCCATCAAATGTTATTAAATATACAGGTGCATCAGCCATCAGACAATCAGACAGTATTGTGAACCGAGATTTGAGTAAGAAGAGGCTGTTAGAGCAAGGGGCCTGTGCTGGACGTAATTTAGGTGGAAAACAGCGAAAACTGAGTGAGGAGATGATATCTGTTAAATACCAGCCTCAGTACACCTCTAGTTGTGGCTCTGGGACTAAAGTACGTAATGAGAAGGAATTCTGCATAGATCCACAAGATTCTGGGTATGGTGAACTCCAGTTCCAAAATGCAGTACTATTACCCAAACAACAAACCATTTCTGCAACTATTCACTTGGAAGAGACGTGGTATACGAGCCCAGAGGATCTTGGTGAGATAGGTTGCACACTGTCATCAAATATCTATGGCCTTGGCATTCTTCTTTTTGAGTTGTTGTGCTGCTGTGAATCGTGGGAGGTGCATTCTGCAGTGATGTCAGATTTGCACCATCGAATCCTACCACCAAATTTTCTTTCACGAAGTCCAAAGGAAGCTGGCTTTTGCTTTTGGCTTCTCCATCCTGAACCTTTGTCTCGTCCAACAACTAGAGAAATCTTGCAGTCTGAACTCATAGGTGGACACAAAGAAGTGTATCATTGTGATGATTTCTCAAATTTTGATGATGATCTTGATGCAGAATCAGAGTTACGTAGTTTTCTCCTCTCATTAAAAGACAGGAAGCATGGGCGTGCCTCTAAGTTAATCGAAGATATAAGATGCTTAGAAGAAGATATAAGCAAGTTTACAACAAGGCACTTATCAAGGGAATCCTTAGATTATTTCAGGGCACAGAATGAGCTTTCTGGTGAAAGAGAACAGGGATTCTGTCTGGAAGAGCCTGTACGCTCAGGTGTTTGTTCCAGATTATTCTCAGCATCAGACATGGATGAGACACAAATGATGAAAAGTATCAGTCAGCTAGACAATGCCTACTTCTCTGCAAGATCCCAAATGCTGGTTATGGAAACGGCTTCTGCAGCAGGTTCTAATAAGGATATGTTAAACAAGCTAGATAGTCATGTGCGAAATTGTACTCAAGATTTAAGCATCAATAAGAAATCAGGTGATCCCCTTGGGGCCTTTTTTGATGGTCTGACCAAGTTTGCTTGCCACAAAAAGTTTAAAGAATGTGGGACACTAAGGAATGCAGATCTTCTCAACTCTTCCAGTGCAATCTCCTCTTTAAGTTTCAACCGTGATGAGGACTATATTGCTACAGCCGGAGTATCAAAGAAAATCAAAATCTTTGATTTTGGTGCCCTTGTAGACAACTCTTTAGATATCCATTATCCTTCAGTTGAGATGTCAAACAATTCTAAGCTGAGCTCTGTTTGCTGGAACAACTACTTTAAGAGCTATCTGGCATCATCAGATTATGATGGAGTGGTACAGATATGGGATGCAAACACGGGTCAAAGAGTTTGTCAACATAAAGAGCATGAAAGGAGGGCTTGGTCTGTCGACTTTTCTCAAGCTGACCCAACAAAGTTTGCTAGTGGAAGTGATGACTTTTCTGTGAGACTGTGGGATGTTAAAGAGGAAAATTCAATAAACACGATCTGGAACCCTGCTAATGTCTGTTATGTTCAGTTCTCCGCGTACTCTTCTCATCTCTTGATTCTTGGATGTGCTGATTACAAGATCTACGGCTATGATCTTCGGCATACTAGAATGCCTTGGTGCACTTTACCTGGTCATGAAAAAGCTGTTAGCTATGTCAGATTTGTAGATAAAGAAACTCTTGTTTCCGCTTCCACGGACAACACTCTGAAGCTCTGGGATCTTAACAAATCTAGTTCAACTGGGTTGTCTTCCAATGCCTGCAGCTTAACTTTTAGCGGTCATACTAATGAGAAGAATTTTGTAGGTTTATCTGTTTTTGATGGATACATAGCATGCGGTTCAGAAACTAATGAGGTTTATAGTTATCACAGAAGTCTACCATTTCCAATCACTTCTCACAAATTTGGATCTACTGATCGTGTCCCTAGAAGTGAGATTGGTGATATTGGACCGGTTCTAGTGATTCAAGAGAAGCATATGGCTGCATCTGAATTCCTTCTTGGAACTAGATCTTCCGTTAAAGTTCTGTCTGCATTAAGCTCAACAGAGGCTCCCATGACTGTTTCTCTTTCAAGATCATATGGTCTTGCGATTATTGCTCTTCCCTTTTGGACCTTGAAAAAACATCTTCTTGCTCCTCCATCTTTTTCTCCTGGTATTGCCCTCTACTTTGATGTTTCTGTTGACAAGGATTCCATGCTTCAAACATTTAACTGTGGTTTTCAAACACAATTTACTATTGATAAAGATGCTAGACTCGGTCACAGCAAGCGACACTTTACCTACCCTTACTTACCTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009639 GO:0009640 GO:0009648 GO:0009657 GO:0009658 GO:0009791 GO:0009987 GO:0010017 GO:0010099 GO:0010100 GO:0010114 GO:0010218 GO:0010228 GO:0016043 GO:0016604 GO:0022414 GO:0023052 GO:0031461 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048519 GO:0048572 GO:0048573 GO:0048575 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0061458 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071840 GO:0080008 GO:0104004 GO:1902494 GO:1990234 GO:2000026 GO:2000028 GO:2000030 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

Pkinase WD40

Protein Analysis

1074

Amino Acids

120.2

Weight (kDa)

6.54

Isoelectric Point (pI)

50.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_RIG_2nd	PF23775	667 - 758	2.6e-06	RIG second beta-propeller
Beta-prop_WDR5	PF25175	673 - 929	3.8e-30	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	674 - 777	2.4e-06	WDR3 first beta-propeller domain
WD40_Gbeta	PF25391	674 - 806	7.2e-06	G protein beta WD-40 repeat protein
Beta-prop_THOC3	PF25174	674 - 925	6.8e-23	THOC3 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	677 - 799	2.2e-07	WDR3 second beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	714 - 878	2.4e-10	WDR36/Utp21 first beta-propeller
WD40_CDC20-Fz	PF24807	723 - 821	6.4e-10	CDC20/Fizzy WD40 domain
WDR55	PF24796	737 - 891	1.1e-10	WDR55
WD40_WDHD1_1st	PF24817	738 - 885	1.6e-11	WDHD1 first WD40 domain
WD40_Prp19	PF24814	739 - 836	5e-09	Prp19 WD40 domain
EIF3I	PF24805	739 - 825	1.7e-09	EIF3I
WD40_CDC20-Fz	PF24807	771 - 885	2.2e-11	CDC20/Fizzy WD40 domain
Beta-prop_EML_2	PF23414	772 - 884	1.7e-06	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_TEP1_2nd	PF25047	778 - 892	3.5e-07	TEP-1 second beta-propeller
Beta-prop_WDR3_1st	PF25173	780 - 928	3e-15	WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	783 - 898	3.9e-07	WDR36/Utp21 second beta-propeller domain
Beta-prop_EIPR1	PF23609	789 - 878	7.5e-08	EIPR1 beta-propeller
WD40_Prp19	PF24814	809 - 921	8.9e-08	Prp19 WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0007686)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46340 AT2G46340
fragaria_vesca	FvH4_7g15970
malus_domestica	MD01G1076400.v1.1 MD07G1145300.v1.1
prunus_persica	Prupe.2G183800_v2.0.a1 Prupe.2G183800_v2.0.a1 Prupe.2G183800_v2.0.a1 Prupe.2G183800_v2.0.a1 Prupe.2G183800_v2.0.a1
pyrus_communis	pycom01g10530
rosa_chinensis	RchiOBHm_Chr1g0358871
rosa_laevigata	RLG00000027920
rosa_multiflora	Rmu_sc0008757.1_g000013
rosa_roxburghii	Rroxscaffold_4G00297550
rosa_rugosa	Rorug01G0265700 Rorug01G0265800 Rorug01G0265900 Rorug01G0266000
rosa_samantha	Rh1AG279700 Rh1BG246600 Rh1CG263700 Rh1DG275000
rosa_wichuraiana	Rw1G024850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	95
Acc36I	ACCTGC	1 cut(s)	1826
AccB1I	GGYRCC	1 cut(s)	2111
AccB7I	CCANNNNNTGG	1 cut(s)	1810
AccI	GTMKAC	4 cut(s)	1166, 2121, 2316, 2794
AccII	CGCG	1 cut(s)	2453
AciI	CCGC	4 cut(s)	2451, 2604, 2694, 2754
AclWI	GGATC	8 cut(s)	505, 683, 1058, 1188, 1794, 1916, 2643, 2833
AcsI	RAATTY	7 cut(s)	1052, 1321, 1468, 2398, 2713, 2819, 2909
AcuI	CTGAAG	3 cut(s)	527, 2133, 2645
AcyI	GRCGYC	1 cut(s)	706
AdeI	CACNNNGTG	1 cut(s)	305
AfaI	GTAC	9 cut(s)	112, 670, 1007, 1038, 1110, 1698, 1888, 2244, 2456
AfiI	CCNNNNNNNGG	3 cut(s)	568, 1810, 2056
AflII	CTTAAG	1 cut(s)	32
AflIII	ACRYGT	1 cut(s)	142
AgeI	ACCGGT	1 cut(s)	2869
AjiI	CACGTC	1 cut(s)	1161
AjnI	CCWGG	2 cut(s)	2545, 3070
AjuI	GAANNNNNNNTTGG	4 cut(s)	1312, 1344, 2901, 2933
AloI	GAACNNNNNNTCC	2 cut(s)	1080, 1112
Alw21I	GWGCWC	2 cut(s)	2183, 2540
Alw26I	GTCTC	4 cut(s)	1151, 1392, 1739, 2368
Alw44I	GTGCAC	1 cut(s)	2536
AlwI	GGATC	8 cut(s)	505, 683, 1058, 1188, 1794, 1916, 2643, 2833
Ama87I	CYCGRG	1 cut(s)	701
AoxI	GGCC	3 cut(s)	927, 1222, 1932
ApaLI	GTGCAC	1 cut(s)	2536
ApeKI	GCWGC	5 cut(s)	5, 1254, 1832, 2679, 2900
ApoI	RAATTY	7 cut(s)	1052, 1321, 1468, 2398, 2713, 2819, 2909
ArsI	GACNNNNNNTTYG	2 cut(s)	2263, 2295
AsiGI	ACCGGT	1 cut(s)	2869
Asp700I	GAANNNNTTC	2 cut(s)	1052, 2913
AspLEI	GCGC	1 cut(s)	96
AspS9I	GGNCC	6 cut(s)	571, 653, 927, 1932, 2867, 3030
AsuC2I	CCSGG	2 cut(s)	702, 703
AsuHPI	GGTGA	6 cut(s)	317, 1097, 1199, 1673, 1931, 2870
AvaI	CYCGRG	1 cut(s)	701
AvaII	GGWCC	4 cut(s)	571, 653, 2867, 3030
BaeGI	GKGCMC	3 cut(s)	1645, 2116, 2540
BanI	GGYRCC	1 cut(s)	2111
BanII	GRGCYC	2 cut(s)	1175, 2183
BarI	GAAGNNNNNNTAC	2 cut(s)	1680, 1712
BauI	CACGAG	1 cut(s)	353
BbsI	GAAGAC	1 cut(s)	2658
Bbv12I	GWGCWC	2 cut(s)	2183, 2540
BbvI	GCAGC	5 cut(s)	17, 1241, 1844, 2691, 2887
BceAI	ACGGC	2 cut(s)	1839, 2518
BciT130I	CCWGG	2 cut(s)	2547, 3072
BciVI	GTATCC	2 cut(s)	155, 2735
BclI	TGATCA	1 cut(s)	328
BcnI	CCSGG	2 cut(s)	702, 703
BcoDI	GTCTC	4 cut(s)	1151, 1392, 1739, 2368
BfmI	CTRYAG	5 cut(s)	175, 1281, 1830, 2070, 2677
BfrI	CTTAAG	1 cut(s)	32
BfuAI	ACCTGC	1 cut(s)	1826
BfuI	GTATCC	2 cut(s)	155, 2735
BglII	AGATCT	3 cut(s)	2005, 2496, 2927
BisI	GCNGC	5 cut(s)	6, 1255, 1833, 2680, 2901
BlpI	GCTNAGC	1 cut(s)	2177
BlsI	GCNGC	5 cut(s)	7, 1256, 1834, 2681, 2902
BmcAI	AGTACT	2 cut(s)	670, 1110
Bme1390I	CCNGG	4 cut(s)	702, 703, 2547, 3072
Bme18I	GGWCC	4 cut(s)	571, 653, 2867, 3030
BmeT110I	CYCGRG	1 cut(s)	701
BmgBI	CACGTC	1 cut(s)	1161
BmgT120I	GGNCC	6 cut(s)	571, 653, 927, 1932, 2867, 3030
BmiI	GGNNCC	5 cut(s)	928, 1933, 2113, 2420, 2970
BmrFI	CCNGG	4 cut(s)	702, 703, 2547, 3072
BmrI	ACTGGG	3 cut(s)	557, 681, 2667
BmuI	ACTGGG	3 cut(s)	557, 681, 2667
BpiI	GAAGAC	1 cut(s)	2658
BpmI	CTGGAG	1 cut(s)	1076
Bpu10I	CCTNAGC	1 cut(s)	1702
Bpu1102I	GCTNAGC	1 cut(s)	2177
BpuEI	CTTGAG	5 cut(s)	201, 457, 703, 1875, 2310
BpuMI	CCSGG	2 cut(s)	702, 703
BsaAI	YACGTR	2 cut(s)	1040, 1505
BsaBI	GATNNNNATC	3 cut(s)	48, 327, 1479
BsaHI	GRCGYC	1 cut(s)	706
BsaJI	CCNNGG	5 cut(s)	701, 1225, 1927, 2531, 2610
BsaWI	WCCGGW	1 cut(s)	2869
BsaXI	ACNNNNNCTCC	2 cut(s)	2953, 2983
Bsc4I	CCNNNNNNNGG	3 cut(s)	568, 1810, 2056
Bse118I	RCCGGY	1 cut(s)	2869
Bse1I	ACTGG	6 cut(s)	202, 563, 676, 1093, 2022, 2662
Bse3DI	GCAATG	1 cut(s)	201
Bse8I	GATNNNNATC	3 cut(s)	48, 327, 1479
BseBI	CCWGG	2 cut(s)	2547, 3072
BseDI	CCNNGG	5 cut(s)	701, 1225, 1927, 2531, 2610
BseGI	GGATG	5 cut(s)	1372, 1747, 2260, 2389, 2486
BseJI	GATNNNNATC	3 cut(s)	48, 327, 1479
BseLI	CCNNNNNNNGG	3 cut(s)	568, 1810, 2056
BseMI	GCAATG	1 cut(s)	201
BseMII	CTCAG	7 cut(s)	267, 405, 959, 1016, 1716, 1740, 2168
BseNI	ACTGG	6 cut(s)	202, 563, 676, 1093, 2022, 2662
BseRI	GAGGAG	6 cut(s)	137, 142, 989, 1505, 2023, 3045
BseSI	GKGCMC	3 cut(s)	1645, 2116, 2540
BseXI	GCAGC	5 cut(s)	17, 1241, 1844, 2691, 2887
Bsh1236I	CGCG	1 cut(s)	2453
BshFI	GGCC	3 cut(s)	929, 1224, 1934
BshNI	GGYRCC	1 cut(s)	2111
BshTI	ACCGGT	1 cut(s)	2869
BsiHKAI	GWGCWC	2 cut(s)	2183, 2540
BsiHKCI	CYCGRG	1 cut(s)	701
BsiSI	CCGG	3 cut(s)	702, 2076, 2870
BslFI	GGGAC	3 cut(s)	1042, 2002, 2825
BslI	CCNNNNNNNGG	3 cut(s)	568, 1810, 2056
BsmAI	GTCTC	4 cut(s)	1151, 1392, 1739, 2368
BsmBI	CGTCTC	1 cut(s)	1151
BsmFI	GGGAC	3 cut(s)	1042, 2002, 2825
BsmI	GAATGC	5 cut(s)	625, 1230, 1276, 2005, 2532
BsnI	GGCC	3 cut(s)	929, 1224, 1934
BsoBI	CYCGRG	1 cut(s)	701
Bsp1286I	GDGCHC	5 cut(s)	1175, 1645, 2116, 2183, 2540
Bsp1720I	GCTNAGC	1 cut(s)	2177
BspACI	CCGC	4 cut(s)	2451, 2604, 2694, 2754
BspANI	GGCC	3 cut(s)	929, 1224, 1934
BspCNI	CTCAG	7 cut(s)	266, 406, 960, 1015, 1715, 1739, 2169
BspFNI	CGCG	1 cut(s)	2453
BspHI	TCATGA	1 cut(s)	2551
BspLI	GGNNCC	5 cut(s)	928, 1933, 2113, 2420, 2970
BspMAI	CTGCAG	4 cut(s)	179, 1285, 1834, 2681
BspMI	ACCTGC	1 cut(s)	1826
BspPI	GGATC	8 cut(s)	505, 683, 1058, 1188, 1794, 1916, 2643, 2833
BspQI	GCTCTTC	2 cut(s)	1683, 3024
BspT107I	GGYRCC	1 cut(s)	2111
BspTI	CTTAAG	1 cut(s)	32
BsrDI	GCAATG	1 cut(s)	201
BsrFI	RCCGGY	1 cut(s)	2869
BsrI	ACTGG	6 cut(s)	202, 563, 676, 1093, 2022, 2662
BssAI	RCCGGY	1 cut(s)	2869
BssECI	CCNNGG	5 cut(s)	701, 1225, 1927, 2531, 2610
BssNAI	GTATAC	1 cut(s)	1167
BssNI	GRCGYC	1 cut(s)	706
BssSI	CACGAG	1 cut(s)	353
BssT1I	CCWWGG	3 cut(s)	1225, 1927, 2531
Bst1107I	GTATAC	1 cut(s)	1167
Bst2BI	CACGAG	1 cut(s)	353
Bst2UI	CCWGG	2 cut(s)	2547, 3072
Bst4CI	ACNGT	7 cut(s)	535, 881, 1206, 2051, 2379, 2980, 3134
Bst6I	CTCTTC	6 cut(s)	902, 1149, 1683, 2023, 2464, 3024
BstACI	GRCGYC	1 cut(s)	706
BstAFI	CTTAAG	1 cut(s)	32
BstAPI	GCANNNNNTGC	1 cut(s)	802
BstBAI	YACGTR	2 cut(s)	1040, 1505
BstC8I	GCNNGC	6 cut(s)	1351, 1545, 1963, 2677, 2752, 3188
BstDSI	CCRYGG	1 cut(s)	2610
BstEII	GGTNACC	1 cut(s)	81
BstF5I	GGATG	5 cut(s)	1372, 1747, 2260, 2389, 2486
BstFNI	CGCG	1 cut(s)	2453
BstHHI	GCGC	1 cut(s)	96
BstMAI	GTCTC	4 cut(s)	1151, 1392, 1739, 2368
BstMWI	GCNNNNNNNGC	6 cut(s)	212, 802, 919, 1832, 2187, 3014
BstNI	CCWGG	2 cut(s)	2547, 3072
BstNSI	RCATGY	1 cut(s)	2754
BstPI	GGTNACC	1 cut(s)	81
BstSCI	CCNGG	4 cut(s)	700, 701, 2545, 3070
BstSFI	CTRYAG	5 cut(s)	175, 1281, 1830, 2070, 2677
BstSLI	GKGCMC	3 cut(s)	1645, 2116, 2540
BstSNI	TACGTA	2 cut(s)	1040, 1505
BstUI	CGCG	1 cut(s)	2453
BstV1I	GCAGC	5 cut(s)	17, 1241, 1844, 2691, 2887
BstV2I	GAAGAC	1 cut(s)	2658
BstZ17I	GTATAC	1 cut(s)	1167
BsuI	GTATCC	2 cut(s)	155, 2735
BsuRI	GGCC	3 cut(s)	929, 1224, 1934
BtgI	CCRYGG	1 cut(s)	2610
BtrI	CACGTC	1 cut(s)	1161
BtsCI	GGATG	5 cut(s)	1372, 1747, 2260, 2389, 2486
BtsI	GCAGTG	1 cut(s)	1290
BtsIMutI	CAGTG	4 cut(s)	559, 1202, 1290, 2029
BveI	ACCTGC	1 cut(s)	1826
Cac8I	GCNNGC	6 cut(s)	1351, 1545, 1963, 2677, 2752, 3188
CciI	TCATGA	1 cut(s)	2551
CfoI	GCGC	1 cut(s)	96
Cfr10I	RCCGGY	1 cut(s)	2869
Cfr13I	GGNCC	6 cut(s)	571, 653, 927, 1932, 2867, 3030
Cfr9I	CCCGGG	1 cut(s)	701
CseI	GACGC	1 cut(s)	695
CsiI	ACCWGGT	1 cut(s)	2545
Csp6I	GTAC	9 cut(s)	111, 669, 1006, 1037, 1109, 1697, 1887, 2243, 2455
CspAI	ACCGGT	1 cut(s)	2869
CviAII	CATG	9 cut(s)	302, 1538, 1738, 1874, 2294, 2552, 2751, 2974, 3115
CviQI	GTAC	9 cut(s)	111, 669, 1006, 1037, 1109, 1697, 1887, 2243, 2455
DraI	TTTAAA	1 cut(s)	1978
DraIII	CACNNNGTG	1 cut(s)	305
Eam1104I	CTCTTC	6 cut(s)	902, 1149, 1683, 2023, 2464, 3024
EarI	CTCTTC	6 cut(s)	902, 1149, 1683, 2023, 2464, 3024
Ecl136II	GAGCTC	1 cut(s)	2181
Eco105I	TACGTA	2 cut(s)	1040, 1505
Eco130I	CCWWGG	3 cut(s)	1225, 1927, 2531
Eco24I	GRGCYC	2 cut(s)	1175, 2183
Eco32I	GATATC	2 cut(s)	984, 2137
Eco47I	GGWCC	4 cut(s)	571, 653, 2867, 3030
Eco53kI	GAGCTC	1 cut(s)	2181
Eco57I	CTGAAG	3 cut(s)	527, 2133, 2645
Eco88I	CYCGRG	1 cut(s)	701
Eco91I	GGTNACC	1 cut(s)	81
EcoICRI	GAGCTC	1 cut(s)	2181
EcoO109I	RGGNCCY	2 cut(s)	927, 1932
EcoO65I	GGTNACC	1 cut(s)	81
EcoRI	GAATTC	2 cut(s)	1052, 2909
EcoRII	CCWGG	2 cut(s)	2545, 3070
EcoRV	GATATC	2 cut(s)	984, 2137
EcoT14I	CCWWGG	3 cut(s)	1225, 1927, 2531
EcoT38I	GRGCYC	2 cut(s)	1175, 2183
ErhI	CCWWGG	3 cut(s)	1225, 1927, 2531
Esp3I	CGTCTC	1 cut(s)	1151
FaeI	CATG	9 cut(s)	305, 1541, 1741, 1877, 2297, 2555, 2754, 2977, 3118
FalI	AAGNNNNNCTT	6 cut(s)	2290, 2322, 2580, 2612, 3179, 3211
FaqI	GGGAC	3 cut(s)	1042, 2002, 2825
FatI	CATG	9 cut(s)	301, 1537, 1737, 1873, 2293, 2551, 2750, 2973, 3114
FauNDI	CATATG	3 cut(s)	442, 2895, 2998
FbaI	TGATCA	1 cut(s)	328
FblI	GTMKAC	4 cut(s)	1166, 2121, 2316, 2794
Fnu4HI	GCNGC	5 cut(s)	6, 1255, 1833, 2680, 2901
FokI	GGATG	5 cut(s)	1359, 1754, 2267, 2396, 2493
FriOI	GRGCYC	2 cut(s)	1175, 2183
Fsp4HI	GCNGC	5 cut(s)	6, 1255, 1833, 2680, 2901
FspAI	RTGCGCAY	1 cut(s)	95
FspI	TGCGCA	1 cut(s)	95
GlaI	GCGC	1 cut(s)	95
GluI	GCNGC	5 cut(s)	6, 1255, 1833, 2680, 2901
GsuI	CTGGAG	1 cut(s)	1076
HaeIII	GGCC	3 cut(s)	929, 1224, 1934
HapII	CCGG	3 cut(s)	702, 2076, 2870
HgaI	GACGC	1 cut(s)	695
HhaI	GCGC	1 cut(s)	96
Hin1I	GRCGYC	1 cut(s)	706
Hin1II	CATG	9 cut(s)	305, 1541, 1741, 1877, 2297, 2555, 2754, 2977, 3118
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HincII	GTYRAC	3 cut(s)	2282, 2317, 3103
HindII	GTYRAC	3 cut(s)	2282, 2317, 3103
HpaII	CCGG	3 cut(s)	702, 2076, 2870
HphI	GGTGA	6 cut(s)	317, 1097, 1199, 1673, 1931, 2870
HpyAV	CCTTC	7 cut(s)	121, 405, 520, 571, 1042, 2157, 2924
HpyCH4III	ACNGT	7 cut(s)	535, 881, 1206, 2051, 2379, 2980, 3134
HpyCH4IV	ACGT	5 cut(s)	142, 940, 1039, 1160, 1504
HpyF10VI	GCNNNNNNNGC	6 cut(s)	212, 802, 919, 1832, 2187, 3014
HpySE526I	ACGT	5 cut(s)	142, 940, 1039, 1160, 1504
Hsp92I	GRCGYC	1 cut(s)	706
Hsp92II	CATG	9 cut(s)	305, 1541, 1741, 1877, 2297, 2555, 2754, 2977, 3118
HspAI	GCGC	1 cut(s)	94
Ksp22I	TGATCA	1 cut(s)	328
LguI	GCTCTTC	2 cut(s)	1683, 3024
LmnI	GCTCC	2 cut(s)	2974, 3058
Lsp1109I	GCAGC	5 cut(s)	17, 1241, 1844, 2691, 2887
MabI	ACCWGGT	1 cut(s)	2545
MaeII	ACGT	5 cut(s)	142, 940, 1039, 1160, 1504
MaeIII	GTNAC	6 cut(s)	81, 145, 168, 707, 1500, 3179
MhlI	GDGCHC	5 cut(s)	1175, 1645, 2116, 2183, 2540
MlyI	GAGTC	3 cut(s)	176, 394, 3168
MmeI	TCCRAC	1 cut(s)	1418
MroXI	GAANNNNTTC	2 cut(s)	1052, 2913
MslI	CAYNNNNRTG	3 cut(s)	1455, 1542, 2703
MspA1I	CMGCKG	1 cut(s)	257
MspCI	CTTAAG	1 cut(s)	32
MspI	CCGG	3 cut(s)	702, 2076, 2870
MspR9I	CCNGG	4 cut(s)	702, 703, 2547, 3072
Mva1269I	GAATGC	5 cut(s)	625, 1230, 1276, 2005, 2532
MvaI	CCWGG	2 cut(s)	2547, 3072
MvnI	CGCG	1 cut(s)	2453
MwoI	GCNNNNNNNGC	6 cut(s)	212, 802, 919, 1832, 2187, 3014
NciI	CCSGG	2 cut(s)	702, 703
NdeI	CATATG	3 cut(s)	442, 2895, 2998
NlaIII	CATG	9 cut(s)	305, 1541, 1741, 1877, 2297, 2555, 2754, 2977, 3118
NlaIV	GGNNCC	5 cut(s)	928, 1933, 2113, 2420, 2970
NmuCI	GTSAC	3 cut(s)	168, 707, 3179
NsbI	TGCGCA	1 cut(s)	95
NspI	RCATGY	1 cut(s)	2754
PaeI	GCATGC	1 cut(s)	2754
PagI	TCATGA	1 cut(s)	2551
PciSI	GCTCTTC	2 cut(s)	1683, 3024
PcsI	WCGNNNNNNNCGW	1 cut(s)	1166
PctI	GAATGC	5 cut(s)	625, 1230, 1276, 2005, 2532
PdmI	GAANNNNTTC	2 cut(s)	1052, 2913
PflFI	GACNNNGTC	1 cut(s)	3177
PflMI	CCANNNNNTGG	1 cut(s)	1810
PinAI	ACCGGT	1 cut(s)	2869
PkrI	GCNGC	5 cut(s)	7, 1256, 1834, 2681, 2902
PleI	GAGTC	3 cut(s)	175, 393, 3168
PpsI	GAGTC	3 cut(s)	175, 393, 3168
Ppu21I	YACGTR	2 cut(s)	1040, 1505
Psp124BI	GAGCTC	1 cut(s)	2183
Psp6I	CCWGG	2 cut(s)	2545, 3070
PspEI	GGTNACC	1 cut(s)	81
PspGI	CCWGG	2 cut(s)	2545, 3070
PspN4I	GGNNCC	5 cut(s)	928, 1933, 2113, 2420, 2970
PspPI	GGNCC	6 cut(s)	571, 653, 927, 1932, 2867, 3030
PstI	CTGCAG	4 cut(s)	179, 1285, 1834, 2681
PsyI	GACNNNGTC	1 cut(s)	3177
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	9 cut(s)	112, 670, 1007, 1038, 1110, 1698, 1888, 2244, 2456
RsaNI	GTAC	9 cut(s)	111, 669, 1006, 1037, 1109, 1697, 1887, 2243, 2455
RseI	CAYNNNNRTG	3 cut(s)	1455, 1542, 2703
SacI	GAGCTC	1 cut(s)	2183
SalI	GTCGAC	1 cut(s)	2315
SapI	GCTCTTC	2 cut(s)	1683, 3024
SatI	GCNGC	5 cut(s)	6, 1255, 1833, 2680, 2901
Sau96I	GGNCC	6 cut(s)	571, 653, 927, 1932, 2867, 3030
ScaI	AGTACT	2 cut(s)	670, 1110
SchI	GAGTC	3 cut(s)	176, 394, 3168
ScrFI	CCNGG	4 cut(s)	702, 703, 2547, 3072
SduI	GDGCHC	5 cut(s)	1175, 1645, 2116, 2183, 2540
SexAI	ACCWGGT	1 cut(s)	2545
SfcI	CTRYAG	5 cut(s)	175, 1281, 1830, 2070, 2677
SinI	GGWCC	4 cut(s)	571, 653, 2867, 3030
SmaI	CCCGGG	1 cut(s)	703
SmiMI	CAYNNNNRTG	3 cut(s)	1455, 1542, 2703
SmlI	CTYRAG	6 cut(s)	32, 216, 472, 682, 1890, 2325
SmoI	CTYRAG	6 cut(s)	32, 216, 472, 682, 1890, 2325
SnaBI	TACGTA	2 cut(s)	1040, 1505
SphI	GCATGC	1 cut(s)	2754
SsiI	CCGC	4 cut(s)	2451, 2604, 2694, 2754
SstI	GAGCTC	1 cut(s)	2183
StyD4I	CCNGG	4 cut(s)	700, 701, 2545, 3070
StyI	CCWWGG	3 cut(s)	1225, 1927, 2531
TaaI	ACNGT	7 cut(s)	535, 881, 1206, 2051, 2379, 2980, 3134
TaiI	ACGT	5 cut(s)	145, 943, 1042, 1163, 1507
TaqI	TCGA	3 cut(s)	1306, 1560, 2316
TaqII	GACCGA	1 cut(s)	3167
TatI	WGTACW	5 cut(s)	110, 668, 1005, 1108, 1886
TscAI	CASTG	4 cut(s)	559, 1209, 1290, 2029
TseFI	GTSAC	3 cut(s)	168, 707, 3179
TseI	GCWGC	5 cut(s)	5, 1254, 1832, 2679, 2900
Tsp45I	GTSAC	3 cut(s)	168, 707, 3179
TspDTI	ATGAA	5 cut(s)	808, 1772, 2310, 2568, 3207
TspGWI	ACGGA	2 cut(s)	2627, 2923
TspMI	CCCGGG	1 cut(s)	701
TspRI	CASTG	4 cut(s)	559, 1209, 1290, 2029
Tth111I	GACNNNGTC	1 cut(s)	3177
Van91I	CCANNNNNTGG	1 cut(s)	1810
Vha464I	CTTAAG	1 cut(s)	32
VneI	GTGCAC	1 cut(s)	2536
VpaK11BI	GGWCC	4 cut(s)	571, 653, 2867, 3030
XapI	RAATTY	7 cut(s)	1052, 1321, 1468, 2398, 2713, 2819, 2909
XceI	RCATGY	1 cut(s)	2754
XmaI	CCCGGG	1 cut(s)	701
XmiI	GTMKAC	4 cut(s)	1166, 2121, 2316, 2794
XmnI	GAANNNNTTC	2 cut(s)	1052, 2913
ZrmI	AGTACT	2 cut(s)	670, 1110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.