Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0007686

Physical Location & Seq

Genomic Coordinates Reverse (-)

50821573 .. 50826105

Gene Structure 4533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG279700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3003 bp

ATGCAATTGGATAGTATAGAGTTTCATAGATATAATGGCAGCAAATGTGGTAAGGAATTAAGGATTGGAGAACTTAAGCAAAAGGATTGTGATCTCAAACTAGAGGGTAAAACATTGTTGGGGTTACCAGCGATGCACACCGATAATTGTAGTACTAATATGGAGGAGAAGGATTTGAGTAAACGTGTAACCTCCTCATCTGGATATGAGTCACTCTGCAGAAGTCCTCGTTCCATAACTGGCATTGCCCTTGATGCTCAAGAGTTAAAATTGAAATATCTAAGGAATCCAAACTCAGCTGATTATAGTCAGGTAGTAATTGGGTTTAGAAGTAAGGATTCACATGGTGATTCTGTGTCAGATGATAATGATCAGATGTTGTTGAGAGTTAGACGCGAGCTTAGAGAAATCCATTCTGGCATCAGGAGTCCGAAGCCTTCTTCAAGCAATTCCTCTGAGCAAGACCCTGATAAAATGTCAGCATATGTAAGGGCTAGGAACAGCAAGATCATCTCAAGCAATATGCTAAGTATTGCCAAAAACCATCTGAAGATCCAATCTCTTGTGAAGGAAACAGTTAAGGGTAAGGGTATCAGTGAAATCCCAGTTATGGACCAGAAGCTATCTTGCGATACAAGGATGAAATCACTTAACCAAAATGGTCAGCATTCTTCACTTGTCCTTGATAGGTCTGGTCCTGAATCTATCAGTACTGGGATCTGCTTGAGGGAGTGGCTTGAACCCGGGCGTCACAAAGTAGATATAGCTGAAAGACTGCTCATATTTAGGCAGATTGTGGAGTTGGTGGATTATGCACACTATCAAGGTGTTGCCTTGCAAGAGTTGCGACCATCACGCTTCATTTTATTGCCATCAAATGTTATTAAATATACAGGTGCATCAGCCATCAGACAATCAGACAGTATTGTGAACCGAGATTTGAGTAAGAAGAGGCTGTTAGAGCAAGGGGCCTGTGCTGGACGTAATTTAGGTGGAAAACAGCGAAAAATGAGTGAGGAGATGATATCTGTTAAATACCAGCCTCAGTACACCTCTAGTTGTGGCCCTGGGACTAAAGTACGTAATGAGAAGGAATTCTGCATAGATCCACAAGATTCTGGGTATGGTGAACTCCAGTTCCAAAATGCAGTACTATTACCCAAACAACAAACCATTTCTGCAACTATTCATTTGGAAGAGACGTGGTATACGAGCCCAGAGGATCTTGGTGAGATAGGTTGCACACTGTCATCAAATATCTATGGCCTTGGCATTCTTCTTTTTGAGTTGTTGTGCTGCTGTGAATCGTGGGAGGTGCATTCTGCAGTGATGTCAGATTTGCACCATCGAATCCTACCACCAAATTTTCTTTCACGAAGTCCAAAGGAAGCTGGCTTTTGCTTTTGGCTTCTCCATCCTGAACCTTTGTCTCGTCCAACAACTAGAGAAATCTTGCAGTCTGAACTCATAGGTGGACACAAAGAAGTGTATCAGTGTGATGATTTCTCAAATTTTGATGATGATCTTGATGCAGAATCAGAGTTACGTAGTTTTCTCCTCTCATTAAAAGACAGGAAGCATGGGCGTGCCTCTAAGTTAATCGAAGATATAAGATGCTTAGAAGAAGATATAAGCAAGTTTACGACAAGGCACTTATCAAGGGAATCCTTAGATTATTTCAGGGCACAGAATGAGCTTTCCGGTGAAAGAGAACAGGGATTCTGTCTGGAAGAGCCTGTACGCTCAGGTGTTTGTTCTAGATTATTCTCAGCATCAGACATGGATGAGACACAAATGATGAAAAGTATCAGTCAGCTAGACAATGCCTACTTCTCCGCAAGATCCCAAATGCTGGTTATGGAAACGGCTTCTGCAGCAGGTTCTAATAAGGATATGTTAAACAAGCTAGATAGTCATGTGCGAAATTGTACTCAAGATTTAAGCATCAATAAGAAATCAGGGGATCCCCTTGGGGCCTTTTTTGATGGTCTGACCAAGTTTGCTTGCCACAAAAAGTTTAAAGAATGTGGGACACTAAGGAATGCAGATCTTCTCAACTCTTCCAGTGCAATCTGCTCTTTAAGTTTCGACCGTGATGAGGACTATATTGCTACAGCCGGAGTATCAAAGAAAATCAAAATCTTTGATTTTGGTGCCCTTGTAGACAACTCTTTAGATATCCATTATCCTTCAGTTGAGATGTCAAACAATTCTAAGCTGAGCTCTGTTTGCTGGAACAACTACTTTAAGAGCTATCTGGCATCATCAGATTATCATGGAGTGGTACAGATATGGGATGCAAACACGGGTCAAAGAGTTTGTCAACATAAAGAGCATGAAAGGAGGGCTTGGTCTGTCGACTTTTCTCAAGCTGACCCAACAAAGTTTGCTAGTGGAAGTGATGACTTTTCTGTGAGACTGTGGGATGTTAAAGAGGAAAATTCAATAAACACGATCTGGAACCCTGCTAATGTCTGTTATGTTCAGTTCTCTGCATACTCTTCTCATCTCTTGATTCTTGGATGTGCTGATTACAAGATCTATGGCTATGATCTTCGGCATACTAGAATGCCTTGGTGCACTTTACCTGGTCATGAAAAAGCTGTTAGCTATGTCAGATTTGTAGATAAAGAAACTCTTGTTTCCGCTTCCACGGACAACACTCTGAAGCTTTGGGATCTTAACAAATCTAGTTCAACTGGGTTGTCTTCCAATGCCTGCAGCTTAACTTTTAGCGGTCATACTAATGAGAAGAATTTTGTAGGTTTATCTGTTTTTGATGGATATATAGCATGCGGTTCAGAAACTAATGAGGTTTATAGTTATCACAGAAGTCTACCCATTCCAATCACTTCTCACAAATTTGGATCTATTGATCCTGTACCTAGAAGTGAGATTGGTGATAGTGGACCGTATGTCTCAAGTGTCTGTTGGCAAAGAAAGTCTAACACACTTGTTGCTGCCAACTCAAGTGGAACTATGAAATTATTACAGATAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009639 GO:0009640 GO:0009648 GO:0009657 GO:0009658 GO:0009791 GO:0009987 GO:0010017 GO:0010099 GO:0010100 GO:0010114 GO:0010218 GO:0010228 GO:0016043 GO:0016604 GO:0022414 GO:0023052 GO:0031461 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048519 GO:0048572 GO:0048573 GO:0048575 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0061458 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071840 GO:0080008 GO:0104004 GO:1902494 GO:1990234 GO:2000026 GO:2000028 GO:2000030 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

Pkinase WD40

Protein Analysis

1000

Amino Acids

112.21

Weight (kDa)

6.36

Isoelectric Point (pI)

50.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_WDHD1_1st	PF24817	683 - 824	1.1e-06	WDHD1 first WD40 domain
Beta-prop_WDR5	PF25175	687 - 943	3.9e-28	WDR5 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	691 - 813	1.7e-06	WDR3 second beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	728 - 892	3.9e-10	WDR36/Utp21 first beta-propeller
Beta-prop_WDR3_1st	PF25173	737 - 816	1e-08	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	737 - 934	2.3e-18	THOC3 beta-propeller domain
WDR55	PF24796	751 - 905	1.9e-10	WDR55
WD40_Prp19	PF24814	754 - 848	3.4e-08	Prp19 WD40 domain
EIF3I	PF24805	756 - 839	8.4e-09	EIF3I
WD40_WDHD1_1st	PF24817	758 - 899	4e-10	WDHD1 first WD40 domain
Beta-prop_WDR3_1st	PF25173	762 - 942	2.7e-20	WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	778 - 912	1.2e-07	WDR36/Utp21 second beta-propeller domain
WD40_CDC20-Fz	PF24807	785 - 899	1.5e-11	CDC20/Fizzy WD40 domain
Beta-prop_EML_2	PF23414	786 - 898	1.1e-06	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_TEP1_2nd	PF25047	787 - 906	1.8e-07	TEP-1 second beta-propeller
Beta-prop_EIPR1	PF23609	815 - 892	1.5e-06	EIPR1 beta-propeller
WD40_Prp19	PF24814	823 - 935	8.1e-08	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	827 - 998	1.9e-07	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0007686)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46340 AT2G46340
fragaria_vesca	FvH4_7g15970
malus_domestica	MD01G1076400.v1.1 MD07G1145300.v1.1
prunus_persica	Prupe.2G183800_v2.0.a1 Prupe.2G183800_v2.0.a1 Prupe.2G183800_v2.0.a1 Prupe.2G183800_v2.0.a1 Prupe.2G183800_v2.0.a1
pyrus_communis	pycom01g10530
rosa_chinensis	RchiOBHm_Chr1g0358871
rosa_laevigata	RLG00000027920
rosa_multiflora	Rmu_sc0008757.1_g000013
rosa_roxburghii	Rroxscaffold_4G00297550
rosa_rugosa	Rorug01G0265700 Rorug01G0265800 Rorug01G0265900 Rorug01G0266000
rosa_samantha	Rh1AG279700 Rh1BG246600 Rh1CG263700 Rh1DG275000
rosa_wichuraiana	Rw1G024850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1868
AccB1I	GGYRCC	1 cut(s)	2153
AccB7I	CCANNNNNTGG	1 cut(s)	1852
AccI	GTMKAC	4 cut(s)	1208, 2163, 2358, 2836
AccII	CGCG	1 cut(s)	396
AciI	CCGC	4 cut(s)	1836, 2646, 2736, 2796
AcsI	RAATTY	6 cut(s)	1094, 1363, 1510, 2440, 2755, 2861
AcuI	CTGAAG	3 cut(s)	569, 2175, 2687
AcyI	GRCGYC	1 cut(s)	748
AdeI	CACNNNGTG	1 cut(s)	347
AfaI	GTAC	9 cut(s)	154, 712, 1049, 1080, 1152, 1740, 1930, 2286, 2883
AfiI	CCNNNNNNNGG	3 cut(s)	610, 1852, 2098
AflII	CTTAAG	1 cut(s)	74
AflIII	ACRYGT	1 cut(s)	184
AgsI	TTSAA	5 cut(s)	274, 444, 740, 2445, 2697
AhdI	GACNNNNNGTC	1 cut(s)	2915
AjiI	CACGTC	1 cut(s)	1203
AjnI	CCWGG	2 cut(s)	1066, 2587
AjuI	GAANNNNNNNTTGG	4 cut(s)	48, 80, 1354, 1386
AloI	GAACNNNNNNTCC	2 cut(s)	1122, 1154
Alw21I	GWGCWC	2 cut(s)	2225, 2582
Alw26I	GTCTC	5 cut(s)	1193, 1434, 1781, 2410, 2923
Alw44I	GTGCAC	1 cut(s)	2578
Ama87I	CYCGRG	1 cut(s)	743
AoxI	GGCC	4 cut(s)	969, 1063, 1264, 1974
ApaLI	GTGCAC	1 cut(s)	2578
ApeKI	GCWGC	5 cut(s)	39, 1296, 1874, 2721, 2960
ApoI	RAATTY	6 cut(s)	1094, 1363, 1510, 2440, 2755, 2861
ArsI	GACNNNNNNTTYG	2 cut(s)	2305, 2337
Asp700I	GAANNNNTTC	1 cut(s)	1094
AspS9I	GGNCC	6 cut(s)	613, 695, 969, 1064, 1974, 2909
AsuC2I	CCSGG	2 cut(s)	744, 745
AsuHPI	GGTGA	5 cut(s)	359, 1139, 1241, 1715, 2912
AvaI	CYCGRG	1 cut(s)	743
AvaII	GGWCC	3 cut(s)	613, 695, 2909
BaeGI	GKGCMC	3 cut(s)	1687, 2158, 2582
BamHI	GGATCC	1 cut(s)	1963
BanI	GGYRCC	1 cut(s)	2153
BanII	GRGCYC	2 cut(s)	1217, 2225
BarI	GAAGNNNNNNTAC	2 cut(s)	1722, 1754
BbsI	GAAGAC	1 cut(s)	2700
Bbv12I	GWGCWC	2 cut(s)	2225, 2582
BbvI	GCAGC	5 cut(s)	51, 1283, 1886, 2733, 2947
BccI	CCATC	8 cut(s)	552, 859, 880, 914, 1353, 1422, 1979, 2774
BceAI	ACGGC	1 cut(s)	1881
BciT130I	CCWGG	2 cut(s)	1068, 2589
BclI	TGATCA	1 cut(s)	370
BcnI	CCSGG	2 cut(s)	744, 745
BcoDI	GTCTC	5 cut(s)	1193, 1434, 1781, 2410, 2923
BfmI	CTRYAG	5 cut(s)	217, 1323, 1872, 2112, 2719
BfrI	CTTAAG	1 cut(s)	74
BfuAI	ACCTGC	1 cut(s)	1868
BglII	AGATCT	2 cut(s)	2047, 2538
BisI	GCNGC	5 cut(s)	40, 1297, 1875, 2722, 2961
BlpI	GCTNAGC	1 cut(s)	2219
BlsI	GCNGC	5 cut(s)	41, 1298, 1876, 2723, 2962
BmcAI	AGTACT	3 cut(s)	154, 712, 1152
Bme1390I	CCNGG	4 cut(s)	744, 745, 1068, 2589
Bme18I	GGWCC	3 cut(s)	613, 695, 2909
BmeRI	GACNNNNNGTC	1 cut(s)	2915
BmeT110I	CYCGRG	1 cut(s)	743
BmgBI	CACGTC	1 cut(s)	1203
BmgT120I	GGNCC	6 cut(s)	613, 695, 969, 1064, 1974, 2909
BmiI	GGNNCC	5 cut(s)	970, 1965, 1975, 2155, 2462
BmrFI	CCNGG	4 cut(s)	744, 745, 1068, 2589
BmrI	ACTGGG	3 cut(s)	599, 723, 2709
BmuI	ACTGGG	3 cut(s)	599, 723, 2709
BpiI	GAAGAC	1 cut(s)	2700
BpmI	CTGGAG	1 cut(s)	1118
Bpu10I	CCTNAGC	1 cut(s)	1744
Bpu1102I	GCTNAGC	1 cut(s)	2219
BpuEI	CTTGAG	7 cut(s)	243, 499, 745, 1917, 2352, 2905, 2953
BpuMI	CCSGG	2 cut(s)	744, 745
BsaAI	YACGTR	2 cut(s)	1082, 1547
BsaBI	GATNNNNATC	3 cut(s)	90, 369, 1521
BsaHI	GRCGYC	1 cut(s)	748
BsaJI	CCNNGG	7 cut(s)	743, 1066, 1067, 1267, 1969, 2573, 2652
BsaWI	WCCGGW	1 cut(s)	1700
Bsc4I	CCNNNNNNNGG	3 cut(s)	610, 1852, 2098
Bse1I	ACTGG	6 cut(s)	244, 605, 718, 1135, 2064, 2704
Bse3DI	GCAATG	1 cut(s)	243
Bse8I	GATNNNNATC	3 cut(s)	90, 369, 1521
BseBI	CCWGG	2 cut(s)	1068, 2589
BseDI	CCNNGG	7 cut(s)	743, 1066, 1067, 1267, 1969, 2573, 2652
BseGI	GGATG	6 cut(s)	645, 1414, 1789, 2302, 2431, 2528
BseJI	GATNNNNATC	3 cut(s)	90, 369, 1521
BseLI	CCNNNNNNNGG	3 cut(s)	610, 1852, 2098
BseMI	GCAATG	1 cut(s)	243
BseMII	CTCAG	6 cut(s)	309, 447, 1058, 1758, 1782, 2210
BseNI	ACTGG	6 cut(s)	244, 605, 718, 1135, 2064, 2704
BseRI	GAGGAG	4 cut(s)	179, 184, 1031, 1547
BseSI	GKGCMC	3 cut(s)	1687, 2158, 2582
BseXI	GCAGC	5 cut(s)	51, 1283, 1886, 2733, 2947
Bsh1236I	CGCG	1 cut(s)	396
Bsh1285I	CGRYCG	1 cut(s)	2092
BshFI	GGCC	4 cut(s)	971, 1065, 1266, 1976
BshNI	GGYRCC	1 cut(s)	2153
BsiEI	CGRYCG	1 cut(s)	2092
BsiHKAI	GWGCWC	2 cut(s)	2225, 2582
BsiHKCI	CYCGRG	1 cut(s)	743
BsiSI	CCGG	3 cut(s)	744, 1701, 2118
BslFI	GGGAC	2 cut(s)	1084, 2044
BslI	CCNNNNNNNGG	3 cut(s)	610, 1852, 2098
BsmAI	GTCTC	5 cut(s)	1193, 1434, 1781, 2410, 2923
BsmBI	CGTCTC	1 cut(s)	1193
BsmFI	GGGAC	2 cut(s)	1084, 2044
BsmI	GAATGC	5 cut(s)	667, 1272, 1318, 2047, 2574
BsnI	GGCC	4 cut(s)	971, 1065, 1266, 1976
BsoBI	CYCGRG	1 cut(s)	743
Bsp1286I	GDGCHC	5 cut(s)	1217, 1687, 2158, 2225, 2582
Bsp1720I	GCTNAGC	1 cut(s)	2219
BspACI	CCGC	4 cut(s)	1836, 2646, 2736, 2796
BspANI	GGCC	4 cut(s)	971, 1065, 1266, 1976
BspCNI	CTCAG	6 cut(s)	308, 448, 1057, 1757, 1781, 2211
BspFNI	CGCG	1 cut(s)	396
BspHI	TCATGA	1 cut(s)	2593
BspLI	GGNNCC	5 cut(s)	970, 1965, 1975, 2155, 2462
BspMAI	CTGCAG	4 cut(s)	221, 1327, 1876, 2723
BspMI	ACCTGC	1 cut(s)	1868
BspQI	GCTCTTC	1 cut(s)	1725
BspT107I	GGYRCC	1 cut(s)	2153
BspTI	CTTAAG	1 cut(s)	74
BsrDI	GCAATG	1 cut(s)	243
BsrI	ACTGG	6 cut(s)	244, 605, 718, 1135, 2064, 2704
BssECI	CCNNGG	7 cut(s)	743, 1066, 1067, 1267, 1969, 2573, 2652
BssNAI	GTATAC	1 cut(s)	1209
BssNI	GRCGYC	1 cut(s)	748
BssT1I	CCWWGG	3 cut(s)	1267, 1969, 2573
Bst1107I	GTATAC	1 cut(s)	1209
Bst2UI	CCWGG	2 cut(s)	1068, 2589
Bst4CI	ACNGT	6 cut(s)	577, 923, 1248, 2093, 2421, 2913
Bst6I	CTCTTC	5 cut(s)	944, 1191, 1725, 2065, 2506
BstACI	GRCGYC	1 cut(s)	748
BstAFI	CTTAAG	1 cut(s)	74
BstAPI	GCANNNNNTGC	1 cut(s)	844
BstBAI	YACGTR	2 cut(s)	1082, 1547
BstC8I	GCNNGC	6 cut(s)	398, 1393, 1587, 2005, 2719, 2794
BstDSI	CCRYGG	1 cut(s)	2652
BstEII	GGTNACC	1 cut(s)	123
BstF5I	GGATG	6 cut(s)	645, 1414, 1789, 2302, 2431, 2528
BstFNI	CGCG	1 cut(s)	396
BstMAI	GTCTC	5 cut(s)	1193, 1434, 1781, 2410, 2923
BstMCI	CGRYCG	1 cut(s)	2092
BstMWI	GCNNNNNNNGC	5 cut(s)	254, 844, 961, 1874, 2229
BstNI	CCWGG	2 cut(s)	1068, 2589
BstNSI	RCATGY	1 cut(s)	2796
BstPI	GGTNACC	1 cut(s)	123
BstSCI	CCNGG	4 cut(s)	742, 743, 1066, 2587
BstSFI	CTRYAG	5 cut(s)	217, 1323, 1872, 2112, 2719
BstSLI	GKGCMC	3 cut(s)	1687, 2158, 2582
BstSNI	TACGTA	2 cut(s)	1082, 1547
BstUI	CGCG	1 cut(s)	396
BstV1I	GCAGC	5 cut(s)	51, 1283, 1886, 2733, 2947
BstV2I	GAAGAC	1 cut(s)	2700
BstZ17I	GTATAC	1 cut(s)	1209
BsuRI	GGCC	4 cut(s)	971, 1065, 1266, 1976
BtgI	CCRYGG	1 cut(s)	2652
BtgZI	GCGATG	1 cut(s)	146
BtrI	CACGTC	1 cut(s)	1203
BtsCI	GGATG	6 cut(s)	645, 1414, 1789, 2302, 2431, 2528
BtsI	GCAGTG	1 cut(s)	1332
BtsIMutI	CAGTG	5 cut(s)	601, 1244, 1332, 1499, 2071
BveI	ACCTGC	1 cut(s)	1868
Cac8I	GCNNGC	6 cut(s)	398, 1393, 1587, 2005, 2719, 2794
CciI	TCATGA	1 cut(s)	2593
Cfr13I	GGNCC	6 cut(s)	613, 695, 969, 1064, 1974, 2909
Cfr9I	CCCGGG	1 cut(s)	743
CseI	GACGC	2 cut(s)	402, 737
CsiI	ACCWGGT	1 cut(s)	2587
Csp6I	GTAC	9 cut(s)	153, 711, 1048, 1079, 1151, 1739, 1929, 2285, 2882
CspCI	CAANNNNNGTGG	2 cut(s)	2953, 2988
CviAII	CATG	8 cut(s)	344, 1580, 1780, 1916, 2276, 2336, 2594, 2793
CviQI	GTAC	9 cut(s)	153, 711, 1048, 1079, 1151, 1739, 1929, 2285, 2882
DraI	TTTAAA	1 cut(s)	2020
DraIII	CACNNNGTG	1 cut(s)	347
DriI	GACNNNNNGTC	1 cut(s)	2915
Eam1104I	CTCTTC	5 cut(s)	944, 1191, 1725, 2065, 2506
Eam1105I	GACNNNNNGTC	1 cut(s)	2915
EarI	CTCTTC	5 cut(s)	944, 1191, 1725, 2065, 2506
Ecl136II	GAGCTC	1 cut(s)	2223
Eco105I	TACGTA	2 cut(s)	1082, 1547
Eco130I	CCWWGG	3 cut(s)	1267, 1969, 2573
Eco24I	GRGCYC	2 cut(s)	1217, 2225
Eco32I	GATATC	2 cut(s)	1026, 2179
Eco47I	GGWCC	3 cut(s)	613, 695, 2909
Eco53kI	GAGCTC	1 cut(s)	2223
Eco57I	CTGAAG	3 cut(s)	569, 2175, 2687
Eco88I	CYCGRG	1 cut(s)	743
Eco91I	GGTNACC	1 cut(s)	123
EcoICRI	GAGCTC	1 cut(s)	2223
EcoO109I	RGGNCCY	2 cut(s)	969, 1974
EcoO65I	GGTNACC	1 cut(s)	123
EcoRI	GAATTC	1 cut(s)	1094
EcoRII	CCWGG	2 cut(s)	1066, 2587
EcoRV	GATATC	2 cut(s)	1026, 2179
EcoT14I	CCWWGG	3 cut(s)	1267, 1969, 2573
EcoT38I	GRGCYC	2 cut(s)	1217, 2225
ErhI	CCWWGG	3 cut(s)	1267, 1969, 2573
Esp3I	CGTCTC	1 cut(s)	1193
FaeI	CATG	8 cut(s)	347, 1583, 1783, 1919, 2279, 2339, 2597, 2796
FalI	AAGNNNNNCTT	4 cut(s)	2332, 2364, 2622, 2654
FaqI	GGGAC	2 cut(s)	1084, 2044
FatI	CATG	8 cut(s)	343, 1579, 1779, 1915, 2275, 2335, 2593, 2792
FauNDI	CATATG	1 cut(s)	484
FbaI	TGATCA	1 cut(s)	370
FblI	GTMKAC	4 cut(s)	1208, 2163, 2358, 2836
Fnu4HI	GCNGC	5 cut(s)	40, 1297, 1875, 2722, 2961
FokI	GGATG	6 cut(s)	652, 1401, 1796, 2309, 2438, 2535
FriOI	GRGCYC	2 cut(s)	1217, 2225
Fsp4HI	GCNGC	5 cut(s)	40, 1297, 1875, 2722, 2961
GluI	GCNGC	5 cut(s)	40, 1297, 1875, 2722, 2961
GsuI	CTGGAG	1 cut(s)	1118
HaeIII	GGCC	4 cut(s)	971, 1065, 1266, 1976
HapII	CCGG	3 cut(s)	744, 1701, 2118
HgaI	GACGC	2 cut(s)	402, 737
Hin1I	GRCGYC	1 cut(s)	748
Hin1II	CATG	8 cut(s)	347, 1583, 1783, 1919, 2279, 2339, 2597, 2796
HincII	GTYRAC	2 cut(s)	2324, 2359
HindII	GTYRAC	2 cut(s)	2324, 2359
HindIII	AAGCTT	1 cut(s)	2669
HpaII	CCGG	3 cut(s)	744, 1701, 2118
HphI	GGTGA	5 cut(s)	359, 1139, 1241, 1715, 2912
HpyAV	CCTTC	5 cut(s)	163, 447, 562, 1084, 2199
HpyCH4III	ACNGT	6 cut(s)	577, 923, 1248, 2093, 2421, 2913
HpyCH4IV	ACGT	5 cut(s)	184, 982, 1081, 1202, 1546
HpyF10VI	GCNNNNNNNGC	5 cut(s)	254, 844, 961, 1874, 2229
HpySE526I	ACGT	5 cut(s)	184, 982, 1081, 1202, 1546
Hsp92I	GRCGYC	1 cut(s)	748
Hsp92II	CATG	8 cut(s)	347, 1583, 1783, 1919, 2279, 2339, 2597, 2796
Ksp22I	TGATCA	1 cut(s)	370
LguI	GCTCTTC	1 cut(s)	1725
Lsp1109I	GCAGC	5 cut(s)	51, 1283, 1886, 2733, 2947
MabI	ACCWGGT	1 cut(s)	2587
MaeII	ACGT	5 cut(s)	184, 982, 1081, 1202, 1546
MaeIII	GTNAC	5 cut(s)	123, 187, 210, 749, 1542
MfeI	CAATTG	1 cut(s)	5
MhlI	GDGCHC	5 cut(s)	1217, 1687, 2158, 2225, 2582
MlyI	GAGTC	2 cut(s)	218, 436
MmeI	TCCRAC	1 cut(s)	1460
MroXI	GAANNNNTTC	1 cut(s)	1094
MslI	CAYNNNNRTG	2 cut(s)	1584, 2745
MspA1I	CMGCKG	1 cut(s)	299
MspCI	CTTAAG	1 cut(s)	74
MspI	CCGG	3 cut(s)	744, 1701, 2118
MspR9I	CCNGG	4 cut(s)	744, 745, 1068, 2589
MunI	CAATTG	1 cut(s)	5
Mva1269I	GAATGC	5 cut(s)	667, 1272, 1318, 2047, 2574
MvaI	CCWGG	2 cut(s)	1068, 2589
MvnI	CGCG	1 cut(s)	396
MwoI	GCNNNNNNNGC	5 cut(s)	254, 844, 961, 1874, 2229
NciI	CCSGG	2 cut(s)	744, 745
NdeI	CATATG	1 cut(s)	484
NlaIII	CATG	8 cut(s)	347, 1583, 1783, 1919, 2279, 2339, 2597, 2796
NlaIV	GGNNCC	5 cut(s)	970, 1965, 1975, 2155, 2462
NmuCI	GTSAC	2 cut(s)	210, 749
NspI	RCATGY	1 cut(s)	2796
PaeI	GCATGC	1 cut(s)	2796
PagI	TCATGA	1 cut(s)	2593
PasI	CCCWGGG	1 cut(s)	1067
PciSI	GCTCTTC	1 cut(s)	1725
PcsI	WCGNNNNNNNCGW	1 cut(s)	1208
PctI	GAATGC	5 cut(s)	667, 1272, 1318, 2047, 2574
PdmI	GAANNNNTTC	1 cut(s)	1094
PflMI	CCANNNNNTGG	1 cut(s)	1852
PkrI	GCNGC	5 cut(s)	41, 1298, 1876, 2723, 2962
PleI	GAGTC	2 cut(s)	217, 435
PpsI	GAGTC	2 cut(s)	217, 435
Ppu21I	YACGTR	2 cut(s)	1082, 1547
Psp124BI	GAGCTC	1 cut(s)	2225
Psp6I	CCWGG	2 cut(s)	1066, 2587
PspEI	GGTNACC	1 cut(s)	123
PspGI	CCWGG	2 cut(s)	1066, 2587
PspN4I	GGNNCC	5 cut(s)	970, 1965, 1975, 2155, 2462
PspPI	GGNCC	6 cut(s)	613, 695, 969, 1064, 1974, 2909
PstI	CTGCAG	4 cut(s)	221, 1327, 1876, 2723
PvuII	CAGCTG	1 cut(s)	299
RsaI	GTAC	9 cut(s)	154, 712, 1049, 1080, 1152, 1740, 1930, 2286, 2883
RsaNI	GTAC	9 cut(s)	153, 711, 1048, 1079, 1151, 1739, 1929, 2285, 2882
RseI	CAYNNNNRTG	2 cut(s)	1584, 2745
SacI	GAGCTC	1 cut(s)	2225
SalI	GTCGAC	1 cut(s)	2357
SapI	GCTCTTC	1 cut(s)	1725
SatI	GCNGC	5 cut(s)	40, 1297, 1875, 2722, 2961
Sau96I	GGNCC	6 cut(s)	613, 695, 969, 1064, 1974, 2909
ScaI	AGTACT	3 cut(s)	154, 712, 1152
SchI	GAGTC	2 cut(s)	218, 436
ScrFI	CCNGG	4 cut(s)	744, 745, 1068, 2589
SduI	GDGCHC	5 cut(s)	1217, 1687, 2158, 2225, 2582
SexAI	ACCWGGT	1 cut(s)	2587
SfcI	CTRYAG	5 cut(s)	217, 1323, 1872, 2112, 2719
SinI	GGWCC	3 cut(s)	613, 695, 2909
SmaI	CCCGGG	1 cut(s)	745
SmiMI	CAYNNNNRTG	2 cut(s)	1584, 2745
SmlI	CTYRAG	8 cut(s)	74, 258, 514, 724, 1932, 2367, 2920, 2968
SmoI	CTYRAG	8 cut(s)	74, 258, 514, 724, 1932, 2367, 2920, 2968
SnaBI	TACGTA	2 cut(s)	1082, 1547
SphI	GCATGC	1 cut(s)	2796
SsiI	CCGC	4 cut(s)	1836, 2646, 2736, 2796
SstI	GAGCTC	1 cut(s)	2225
StyD4I	CCNGG	4 cut(s)	742, 743, 1066, 2587
StyI	CCWWGG	3 cut(s)	1267, 1969, 2573
TaaI	ACNGT	6 cut(s)	577, 923, 1248, 2093, 2421, 2913
TaiI	ACGT	5 cut(s)	187, 985, 1084, 1205, 1549
TaqI	TCGA	4 cut(s)	1348, 1602, 2088, 2358
TatI	WGTACW	5 cut(s)	152, 710, 1047, 1150, 1928
TscAI	CASTG	5 cut(s)	601, 1251, 1332, 1499, 2071
TseFI	GTSAC	2 cut(s)	210, 749
TseI	GCWGC	5 cut(s)	39, 1296, 1874, 2721, 2960
Tsp45I	GTSAC	2 cut(s)	210, 749
TspDTI	ATGAA	8 cut(s)	14, 656, 850, 1178, 1814, 2352, 2610, 2996
TspGWI	ACGGA	1 cut(s)	2669
TspMI	CCCGGG	1 cut(s)	743
TspRI	CASTG	5 cut(s)	601, 1251, 1332, 1499, 2071
Van91I	CCANNNNNTGG	1 cut(s)	1852
Vha464I	CTTAAG	1 cut(s)	74
VneI	GTGCAC	1 cut(s)	2578
VpaK11BI	GGWCC	3 cut(s)	613, 695, 2909
XapI	RAATTY	6 cut(s)	1094, 1363, 1510, 2440, 2755, 2861
XbaI	TCTAGA	1 cut(s)	1757
XceI	RCATGY	1 cut(s)	2796
XmaI	CCCGGG	1 cut(s)	743
XmiI	GTMKAC	4 cut(s)	1208, 2163, 2358, 2836
XmnI	GAANNNNTTC	1 cut(s)	1094
ZrmI	AGTACT	3 cut(s)	154, 712, 1152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.