Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0007686

Physical Location & Seq

Genomic Coordinates Forward (+)

17471889 .. 17478149

Gene Structure 6261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00297550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2961 bp

ATGGCAGCAAATGTGGTAAGGATTGGAGAACTTAAGCAAAAGGATTGTGATCTCAAACTAGAGGGTAAAACGTTGTTGGGGTTACCAGCGATGCGCACCGATAATTGTAGTACTAATATGGAGGAGAAGGATTTGAGTAAACGTGTAACCTCCTCATCTGGATACGAGTCACTCTGCAGAAGTCCTCGTTCCATAACTGGCATTGCCCCTGATGCTCAAGAGTTAAAATTGAAATATCTAAGGAATCCAAACTCAGCTGATTATAGTCAGGTAGGAATTGGGTTTAGAAGTAAGGATTCACATGGTGATTCTGTGTCAGAAGATAATGATCAGATGTTGTTGAGAGTTAGACGCGAGCTTAGAGAAATCCATTCTGGCATCAGGAGTCCGAAGCCTTCTTCAAGCAATTCCTCTGAGCAAGACCCTGATAAAATGTCAGCATATGTAAGGGCTAGGAACAGCAAGATCATCTCAAGCAGTATGCTAAGTATTGCCAAAAACCATCTGAAGATCCAATCTCTTGTGAAGGAAACAGTTAAGGGTAAGGGTATCAGTGAAATCCCAGTTATGGACCAGAAGGTATCTTGCGATACTAGGATGAAATCACTTAACCAAAATGGTCAGCATTCTTCACTTGTCCTTGATAGGTCTGGTCCAGAATCTATCAGTACTGGGATCTGCTTGAGGGAGTGGCTTGAACCCGGGCGTCACAAAGTAGATATAGCTGAAAGACTGCTCATATTTAGGCAGATTGTGGAGTTGGTGGATTATGCACACTATCAAGGTGTGGCCTTGCAAGAGTTGCGACCATCACGCTTCATTTTATTGCCATCAAATGTTATTAAATATACAGGTGCATCAGCCATCAGACAATCAGACAGTTTTGTGAACCGAGATTTGAGTAAGAAGAGGCTGTTAGAGCAAGGGGCCTGTGCTGGACGTAATTTAGGTGCAAAACAGCGAAAACTGAGTGAGGAGATGATATCTGTTAAATACCAGCCTCAGTACACCTCTAGTTGTGGCTCTGGGACTGAAGTACGTAATGAGAAGGAATTCTGCATAGATCCACAAGATTCTGGGTATGGTGAACTCCAGTTCCAAAATGCAGTACTATTACCCAAACAACAAACCATTTCTGCAACTATTCATTTGGAAGAGACGTGGTATACGAGCCCAGAGGATCTTGGTGAGATAGGTTGCACACTGTCATCAAATATCTATGGCCTTGGCATTCTTCTTTTTGAGTTGTTGTGCTGCTGTGAATCGTGGGAGGTGCATTCTGCAGTGATGTCAGATTTGCACCATCGAATCCTACCACCAAATTTTCTTTCACGAAGTCCTAAGGAAGCGGGCTTTTGCTTTTGGCTTCTCCATCCTGAACCTTTGTCTCGTCCAACAACTAGAGAAATCTTGCAGTCTGAACTCATAGGTGGACACAAAGAAGTGTATCATTGTGATGATTTCTCAAATTTTGATGATGATCTTGATGCAGAATCAGAGTTGCGTAGTTTTCTCCTCTCATTAAAAGACAGGAAGCATGGTCGTGCCTCTAAGTTAATCGAAGATATAAGATGCTTAGAAGAAGACATAAGCAAGTTTACGACAAGGCACTTATCAAGGGAATCCTTAGATTATTTCAGGGCACAGAATGAGCTTTCCGATGAAAGAGAACAGGGATTCTGTCTGGAAGAGCCTGTACGCTCAGGTGTTTGTTCTAGATTATTCTCAGCATCAGATATGGATGAGACACAAATGATGAAAAGTATCAGTCAGCTAGACAATGCCTACTTCTCCGCAAGATCCCAAATGCTGGTTATGGAAACGGCTTCTGCAACAGGTTCTAATAAGGATATGTTAAACAAGCTAGATAGTCATGTGCGAAATTGTACTCAAGATTTAAGCATCAATAAGAAATCAGGTGATCCCCTTGGGGCCTTTTTTGATGGTCTGACCAAGTTTGCTTGCCACAAAAAGTTTAAAGAATGTGGGACACTAAGGAATGCAGATCTTCTCAACTCTTCCAGTGCAATCTGCTCTTTAAGTTTCGACCGTGATGAGGACTATATTGCTACAGCCGGAGTATCAAAGAAAATCAAAATCTTTGATTTTGGTGCCCTTGTAGACAACTCTTTAGATATCCATTATCCTTCAGTTGAGATGTCAAACAATTCTAAGCTGAGCTCTGTTTGCTGGAACAACTACTTTAAGAGCTATCTGGCATCATCAGATTATGATGGAGTGGTACAGATATGGGATGCAAACACGGGTCAAAGAGTTTGTCAACATAAAGAGCATGAAAGGAGGGCTTGGTCTGTCGACTTTTCTCAAGCTGACCCAACAAAGTTTGCTAGTGGAAGTGATGACTTTTCTGTGAGACTGTGGGATGTTAAAGAGGAAAATTCAATAAACACGATCTGGAACCCTGCTAATGTCTGTTATGTTCAGTTCTCCGCGTACTCTTCTCATCTCTTGATTCTTGGATGTGCTGATTACAAGATCTACGGCTATGATCTTCGGCATACTAGAATGCCTTGGTGCACTTTACCTGGTCATGAAAAAGCTGTTAGCTATGTCAGATTTGTAGATAAAGAAACTCTTGTTTCCGCTTCTACGGACAACACTCTGAAGCTTTGGGATCTTAACAAATCTAGTTCAACTGGGTTGTCTTCCAATGCCTGCAGCTTAACTTTTAGCGGTCATACTAATGAGAAGAATTTTGTAGGTTTATCTGTTTTTGATGGATACATAGCATGCGGTTCAGAAACTAATGAGGTTTATAGTTACCACAGAAGTCTACCCATTCCAATCACTTCTCACAAATTTGGATCTATTGATCCTGTCCCTAGAAGTGAGATTGGTGATAGTGGACCATATGTCTCAAGTGTCTGTTGGCAAAGAAAGTCTAACACACTTGTTGCTGCCAACTCAAGTGGAACTATGAAATTATTACAGATAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009639 GO:0009640 GO:0009648 GO:0009657 GO:0009658 GO:0009791 GO:0009987 GO:0010017 GO:0010099 GO:0010100 GO:0010114 GO:0010218 GO:0010228 GO:0016043 GO:0016604 GO:0022414 GO:0023052 GO:0031461 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048519 GO:0048572 GO:0048573 GO:0048575 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0061458 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071840 GO:0080008 GO:0104004 GO:1902494 GO:1990234 GO:2000026 GO:2000028 GO:2000030 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

Pkinase WD40

Protein Analysis

986

Amino Acids

110.49

Weight (kDa)

6.15

Isoelectric Point (pI)

50.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_WDHD1_1st	PF24817	669 - 805	1.6e-06	WDHD1 first WD40 domain
Beta-prop_WDR5	PF25175	673 - 929	1.3e-29	WDR5 beta-propeller domain
WD40_Gbeta	PF25391	674 - 806	7.5e-06	G protein beta WD-40 repeat protein
Beta-prop_WDR3_1st	PF25173	674 - 777	5.2e-06	WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	677 - 799	2.3e-07	WDR3 second beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	715 - 878	2.4e-10	WDR36/Utp21 first beta-propeller
WD40_CDC20-Fz	PF24807	723 - 823	3.3e-10	CDC20/Fizzy WD40 domain
Beta-prop_THOC3	PF25174	724 - 841	2.1e-14	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	725 - 837	1.4e-11	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	738 - 885	2.2e-11	WDHD1 first WD40 domain
WDR55	PF24796	738 - 891	1.1e-10	WDR55
WD40_Prp19	PF24814	739 - 835	6.6e-09	Prp19 WD40 domain
EIF3I	PF24805	739 - 825	1.6e-09	EIF3I
WD40_CDC20-Fz	PF24807	771 - 885	1.7e-11	CDC20/Fizzy WD40 domain
Beta-prop_EML_2	PF23414	772 - 884	1.1e-06	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_TEP1_2nd	PF25047	773 - 892	1.7e-07	TEP-1 second beta-propeller
Beta-prop_WDR3_2nd	PF25172	779 - 892	8.7e-07	WDR3 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	780 - 928	3.3e-15	WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	783 - 899	3.4e-07	WDR36/Utp21 second beta-propeller domain
Beta-prop_EIPR1	PF23609	801 - 878	1.3e-06	EIPR1 beta-propeller
WD40_Prp19	PF24814	809 - 921	8e-08	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	844 - 984	9.2e-07	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0007686)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46340 AT2G46340
fragaria_vesca	FvH4_7g15970
malus_domestica	MD01G1076400.v1.1 MD07G1145300.v1.1
prunus_persica	Prupe.2G183800_v2.0.a1 Prupe.2G183800_v2.0.a1 Prupe.2G183800_v2.0.a1 Prupe.2G183800_v2.0.a1 Prupe.2G183800_v2.0.a1
pyrus_communis	pycom01g10530
rosa_chinensis	RchiOBHm_Chr1g0358871
rosa_laevigata	RLG00000027920
rosa_multiflora	Rmu_sc0008757.1_g000013
rosa_roxburghii	Rroxscaffold_4G00297550
rosa_rugosa	Rorug01G0265700 Rorug01G0265800 Rorug01G0265900 Rorug01G0266000
rosa_samantha	Rh1AG279700 Rh1BG246600 Rh1CG263700 Rh1DG275000
rosa_wichuraiana	Rw1G024850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	95
AccB1I	GGYRCC	1 cut(s)	2111
AccB7I	CCANNNNNTGG	1 cut(s)	1810
AccI	GTMKAC	4 cut(s)	1166, 2121, 2316, 2794
AccII	CGCG	2 cut(s)	354, 2453
AciI	CCGC	6 cut(s)	1349, 1794, 2451, 2604, 2694, 2754
AclI	AACGTT	1 cut(s)	71
AclWI	GGATC	9 cut(s)	505, 683, 1058, 1188, 1794, 1916, 2643, 2828, 2833
AcsI	RAATTY	6 cut(s)	1052, 1321, 1468, 2398, 2713, 2819
AcuI	CTGAAG	4 cut(s)	527, 1053, 2133, 2645
AcyI	GRCGYC	1 cut(s)	706
AdeI	CACNNNGTG	1 cut(s)	305
AfaI	GTAC	9 cut(s)	112, 670, 1007, 1038, 1110, 1698, 1888, 2244, 2456
AfiI	CCNNNNNNNGG	3 cut(s)	568, 1810, 2056
AflII	CTTAAG	1 cut(s)	32
AflIII	ACRYGT	1 cut(s)	142
AgsI	TTSAA	5 cut(s)	232, 402, 698, 2403, 2655
AhdI	GACNNNNNGTC	1 cut(s)	2873
AjiI	CACGTC	1 cut(s)	1161
AjnI	CCWGG	1 cut(s)	2545
AjuI	GAANNNNNNNTTGG	2 cut(s)	1312, 1344
AloI	GAACNNNNNNTCC	2 cut(s)	1080, 1112
Alw21I	GWGCWC	2 cut(s)	2183, 2540
Alw26I	GTCTC	5 cut(s)	1151, 1392, 1739, 2368, 2881
Alw44I	GTGCAC	1 cut(s)	2536
AlwI	GGATC	9 cut(s)	505, 683, 1058, 1188, 1794, 1916, 2643, 2828, 2833
Ama87I	CYCGRG	1 cut(s)	701
AoxI	GGCC	4 cut(s)	789, 927, 1222, 1932
ApaLI	GTGCAC	1 cut(s)	2536
ApeKI	GCWGC	4 cut(s)	5, 1254, 2679, 2918
ApoI	RAATTY	6 cut(s)	1052, 1321, 1468, 2398, 2713, 2819
ArsI	GACNNNNNNTTYG	2 cut(s)	2263, 2295
Asp700I	GAANNNNTTC	1 cut(s)	1052
AspLEI	GCGC	1 cut(s)	96
AspS9I	GGNCC	5 cut(s)	571, 653, 927, 1932, 2867
AsuC2I	CCSGG	2 cut(s)	702, 703
AsuHPI	GGTGA	5 cut(s)	317, 1097, 1199, 1931, 2870
AvaI	CYCGRG	1 cut(s)	701
AvaII	GGWCC	3 cut(s)	571, 653, 2867
AxyI	CCTNAGG	1 cut(s)	1341
BaeGI	GKGCMC	3 cut(s)	1645, 2116, 2540
BanI	GGYRCC	1 cut(s)	2111
BanII	GRGCYC	2 cut(s)	1175, 2183
BarI	GAAGNNNNNNTAC	2 cut(s)	1680, 1712
BbsI	GAAGAC	2 cut(s)	1590, 2658
Bbv12I	GWGCWC	2 cut(s)	2183, 2540
BbvI	GCAGC	4 cut(s)	17, 1241, 2691, 2905
BccI	CCATC	9 cut(s)	510, 817, 838, 872, 1311, 1380, 1937, 2228, 2732
BceAI	ACGGC	2 cut(s)	1839, 2518
BciT130I	CCWGG	1 cut(s)	2547
BciVI	GTATCC	2 cut(s)	155, 2735
BclI	TGATCA	1 cut(s)	328
BcnI	CCSGG	2 cut(s)	702, 703
BcoDI	GTCTC	5 cut(s)	1151, 1392, 1739, 2368, 2881
BfmI	CTRYAG	4 cut(s)	175, 1281, 2070, 2677
BfrI	CTTAAG	1 cut(s)	32
BfuI	GTATCC	2 cut(s)	155, 2735
BglII	AGATCT	2 cut(s)	2005, 2496
BisI	GCNGC	4 cut(s)	6, 1255, 2680, 2919
BlpI	GCTNAGC	1 cut(s)	2177
BlsI	GCNGC	4 cut(s)	7, 1256, 2681, 2920
BmcAI	AGTACT	3 cut(s)	112, 670, 1110
Bme1390I	CCNGG	3 cut(s)	702, 703, 2547
Bme18I	GGWCC	3 cut(s)	571, 653, 2867
BmeRI	GACNNNNNGTC	1 cut(s)	2873
BmeT110I	CYCGRG	1 cut(s)	701
BmgBI	CACGTC	1 cut(s)	1161
BmgT120I	GGNCC	5 cut(s)	571, 653, 927, 1932, 2867
BmiI	GGNNCC	4 cut(s)	928, 1933, 2113, 2420
BmrFI	CCNGG	3 cut(s)	702, 703, 2547
BmrI	ACTGGG	3 cut(s)	557, 681, 2667
BmuI	ACTGGG	3 cut(s)	557, 681, 2667
BpiI	GAAGAC	2 cut(s)	1590, 2658
BpmI	CTGGAG	1 cut(s)	1076
Bpu10I	CCTNAGC	1 cut(s)	1702
Bpu1102I	GCTNAGC	1 cut(s)	2177
BpuEI	CTTGAG	7 cut(s)	201, 457, 703, 1875, 2310, 2863, 2911
BpuMI	CCSGG	2 cut(s)	702, 703
BsaAI	YACGTR	1 cut(s)	1040
BsaBI	GATNNNNATC	3 cut(s)	48, 327, 1479
BsaHI	GRCGYC	1 cut(s)	706
BsaJI	CCNNGG	4 cut(s)	701, 1225, 1927, 2531
Bsc4I	CCNNNNNNNGG	3 cut(s)	568, 1810, 2056
Bse1I	ACTGG	6 cut(s)	202, 563, 676, 1093, 2022, 2662
Bse21I	CCTNAGG	1 cut(s)	1341
Bse3DI	GCAATG	1 cut(s)	201
Bse8I	GATNNNNATC	3 cut(s)	48, 327, 1479
BseBI	CCWGG	1 cut(s)	2547
BseDI	CCNNGG	4 cut(s)	701, 1225, 1927, 2531
BseGI	GGATG	6 cut(s)	603, 1372, 1747, 2260, 2389, 2486
BseJI	GATNNNNATC	3 cut(s)	48, 327, 1479
BseLI	CCNNNNNNNGG	3 cut(s)	568, 1810, 2056
BseMI	GCAATG	1 cut(s)	201
BseMII	CTCAG	7 cut(s)	267, 405, 959, 1016, 1716, 1740, 2168
BseNI	ACTGG	6 cut(s)	202, 563, 676, 1093, 2022, 2662
BseRI	GAGGAG	4 cut(s)	137, 142, 989, 1505
BseSI	GKGCMC	3 cut(s)	1645, 2116, 2540
BseXI	GCAGC	4 cut(s)	17, 1241, 2691, 2905
Bsh1236I	CGCG	2 cut(s)	354, 2453
Bsh1285I	CGRYCG	1 cut(s)	2050
BshFI	GGCC	4 cut(s)	791, 929, 1224, 1934
BshNI	GGYRCC	1 cut(s)	2111
BsiEI	CGRYCG	1 cut(s)	2050
BsiHKAI	GWGCWC	2 cut(s)	2183, 2540
BsiHKCI	CYCGRG	1 cut(s)	701
BsiSI	CCGG	2 cut(s)	702, 2076
BslFI	GGGAC	3 cut(s)	1042, 2002, 2825
BslI	CCNNNNNNNGG	3 cut(s)	568, 1810, 2056
BsmAI	GTCTC	5 cut(s)	1151, 1392, 1739, 2368, 2881
BsmBI	CGTCTC	1 cut(s)	1151
BsmFI	GGGAC	3 cut(s)	1042, 2002, 2825
BsmI	GAATGC	5 cut(s)	625, 1230, 1276, 2005, 2532
BsnI	GGCC	4 cut(s)	791, 929, 1224, 1934
BsoBI	CYCGRG	1 cut(s)	701
Bsp1286I	GDGCHC	5 cut(s)	1175, 1645, 2116, 2183, 2540
Bsp1720I	GCTNAGC	1 cut(s)	2177
BspACI	CCGC	6 cut(s)	1349, 1794, 2451, 2604, 2694, 2754
BspANI	GGCC	4 cut(s)	791, 929, 1224, 1934
BspCNI	CTCAG	7 cut(s)	266, 406, 960, 1015, 1715, 1739, 2169
BspFNI	CGCG	2 cut(s)	354, 2453
BspHI	TCATGA	1 cut(s)	2551
BspLI	GGNNCC	4 cut(s)	928, 1933, 2113, 2420
BspMAI	CTGCAG	3 cut(s)	179, 1285, 2681
BspPI	GGATC	9 cut(s)	505, 683, 1058, 1188, 1794, 1916, 2643, 2828, 2833
BspQI	GCTCTTC	1 cut(s)	1683
BspT107I	GGYRCC	1 cut(s)	2111
BspTI	CTTAAG	1 cut(s)	32
BsrDI	GCAATG	1 cut(s)	201
BsrI	ACTGG	6 cut(s)	202, 563, 676, 1093, 2022, 2662
BssECI	CCNNGG	4 cut(s)	701, 1225, 1927, 2531
BssNAI	GTATAC	1 cut(s)	1167
BssNI	GRCGYC	1 cut(s)	706
BssT1I	CCWWGG	3 cut(s)	1225, 1927, 2531
Bst1107I	GTATAC	1 cut(s)	1167
Bst2UI	CCWGG	1 cut(s)	2547
Bst4CI	ACNGT	5 cut(s)	535, 881, 1206, 2051, 2379
Bst6I	CTCTTC	5 cut(s)	902, 1149, 1683, 2023, 2464
BstACI	GRCGYC	1 cut(s)	706
BstAFI	CTTAAG	1 cut(s)	32
BstAPI	GCANNNNNTGC	1 cut(s)	802
BstBAI	YACGTR	1 cut(s)	1040
BstC8I	GCNNGC	5 cut(s)	356, 1351, 1963, 2677, 2752
BstEII	GGTNACC	1 cut(s)	81
BstF5I	GGATG	6 cut(s)	603, 1372, 1747, 2260, 2389, 2486
BstFNI	CGCG	2 cut(s)	354, 2453
BstHHI	GCGC	1 cut(s)	96
BstMAI	GTCTC	5 cut(s)	1151, 1392, 1739, 2368, 2881
BstMCI	CGRYCG	1 cut(s)	2050
BstMWI	GCNNNNNNNGC	4 cut(s)	212, 802, 919, 2187
BstNI	CCWGG	1 cut(s)	2547
BstNSI	RCATGY	1 cut(s)	2754
BstPI	GGTNACC	1 cut(s)	81
BstSCI	CCNGG	3 cut(s)	700, 701, 2545
BstSFI	CTRYAG	4 cut(s)	175, 1281, 2070, 2677
BstSLI	GKGCMC	3 cut(s)	1645, 2116, 2540
BstSNI	TACGTA	1 cut(s)	1040
BstUI	CGCG	2 cut(s)	354, 2453
BstV1I	GCAGC	4 cut(s)	17, 1241, 2691, 2905
BstV2I	GAAGAC	2 cut(s)	1590, 2658
BstX2I	RGATCY	9 cut(s)	510, 675, 1063, 1180, 1799, 2005, 2496, 2635, 2825
BstYI	RGATCY	9 cut(s)	510, 675, 1063, 1180, 1799, 2005, 2496, 2635, 2825
BstZ17I	GTATAC	1 cut(s)	1167
Bsu36I	CCTNAGG	1 cut(s)	1341
BsuI	GTATCC	2 cut(s)	155, 2735
BsuRI	GGCC	4 cut(s)	791, 929, 1224, 1934
BtgZI	GCGATG	1 cut(s)	104
BtrI	CACGTC	1 cut(s)	1161
BtsCI	GGATG	6 cut(s)	603, 1372, 1747, 2260, 2389, 2486
BtsI	GCAGTG	1 cut(s)	1290
BtsIMutI	CAGTG	4 cut(s)	559, 1202, 1290, 2029
Cac8I	GCNNGC	5 cut(s)	356, 1351, 1963, 2677, 2752
CciI	TCATGA	1 cut(s)	2551
CfoI	GCGC	1 cut(s)	96
Cfr13I	GGNCC	5 cut(s)	571, 653, 927, 1932, 2867
Cfr9I	CCCGGG	1 cut(s)	701
CseI	GACGC	2 cut(s)	360, 695
CsiI	ACCWGGT	1 cut(s)	2545
Csp6I	GTAC	9 cut(s)	111, 669, 1006, 1037, 1109, 1697, 1887, 2243, 2455
CspCI	CAANNNNNGTGG	2 cut(s)	2911, 2946
CviAII	CATG	6 cut(s)	302, 1538, 1874, 2294, 2552, 2751
CviQI	GTAC	9 cut(s)	111, 669, 1006, 1037, 1109, 1697, 1887, 2243, 2455
DraI	TTTAAA	1 cut(s)	1978
DraIII	CACNNNGTG	1 cut(s)	305
DriI	GACNNNNNGTC	1 cut(s)	2873
Eam1104I	CTCTTC	5 cut(s)	902, 1149, 1683, 2023, 2464
Eam1105I	GACNNNNNGTC	1 cut(s)	2873
EarI	CTCTTC	5 cut(s)	902, 1149, 1683, 2023, 2464
Ecl136II	GAGCTC	1 cut(s)	2181
Eco105I	TACGTA	1 cut(s)	1040
Eco130I	CCWWGG	3 cut(s)	1225, 1927, 2531
Eco24I	GRGCYC	2 cut(s)	1175, 2183
Eco32I	GATATC	2 cut(s)	984, 2137
Eco47I	GGWCC	3 cut(s)	571, 653, 2867
Eco53kI	GAGCTC	1 cut(s)	2181
Eco57I	CTGAAG	4 cut(s)	527, 1053, 2133, 2645
Eco81I	CCTNAGG	1 cut(s)	1341
Eco88I	CYCGRG	1 cut(s)	701
Eco91I	GGTNACC	1 cut(s)	81
EcoICRI	GAGCTC	1 cut(s)	2181
EcoO109I	RGGNCCY	2 cut(s)	927, 1932
EcoO65I	GGTNACC	1 cut(s)	81
EcoRI	GAATTC	1 cut(s)	1052
EcoRII	CCWGG	1 cut(s)	2545
EcoRV	GATATC	2 cut(s)	984, 2137
EcoT14I	CCWWGG	3 cut(s)	1225, 1927, 2531
EcoT38I	GRGCYC	2 cut(s)	1175, 2183
ErhI	CCWWGG	3 cut(s)	1225, 1927, 2531
Esp3I	CGTCTC	1 cut(s)	1151
FaeI	CATG	6 cut(s)	305, 1541, 1877, 2297, 2555, 2754
FalI	AAGNNNNNCTT	4 cut(s)	2290, 2322, 2580, 2612
FaqI	GGGAC	3 cut(s)	1042, 2002, 2825
FatI	CATG	6 cut(s)	301, 1537, 1873, 2293, 2551, 2750
FauI	CCCGC	1 cut(s)	1342
FauNDI	CATATG	2 cut(s)	442, 2872
FbaI	TGATCA	1 cut(s)	328
FblI	GTMKAC	4 cut(s)	1166, 2121, 2316, 2794
Fnu4HI	GCNGC	4 cut(s)	6, 1255, 2680, 2919
FokI	GGATG	6 cut(s)	610, 1359, 1754, 2267, 2396, 2493
FriOI	GRGCYC	2 cut(s)	1175, 2183
Fsp4HI	GCNGC	4 cut(s)	6, 1255, 2680, 2919
FspAI	RTGCGCAY	1 cut(s)	95
FspI	TGCGCA	1 cut(s)	95
GlaI	GCGC	1 cut(s)	95
GluI	GCNGC	4 cut(s)	6, 1255, 2680, 2919
GsuI	CTGGAG	1 cut(s)	1076
HaeIII	GGCC	4 cut(s)	791, 929, 1224, 1934
HapII	CCGG	2 cut(s)	702, 2076
HgaI	GACGC	2 cut(s)	360, 695
HhaI	GCGC	1 cut(s)	96
Hin1I	GRCGYC	1 cut(s)	706
Hin1II	CATG	6 cut(s)	305, 1541, 1877, 2297, 2555, 2754
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HincII	GTYRAC	2 cut(s)	2282, 2317
HindII	GTYRAC	2 cut(s)	2282, 2317
HindIII	AAGCTT	1 cut(s)	2627
HpaII	CCGG	2 cut(s)	702, 2076
HphI	GGTGA	5 cut(s)	317, 1097, 1199, 1931, 2870
HpyAV	CCTTC	6 cut(s)	121, 405, 520, 571, 1042, 2157
HpyCH4III	ACNGT	5 cut(s)	535, 881, 1206, 2051, 2379
HpyCH4IV	ACGT	5 cut(s)	71, 142, 940, 1039, 1160
HpyF10VI	GCNNNNNNNGC	4 cut(s)	212, 802, 919, 2187
HpySE526I	ACGT	5 cut(s)	71, 142, 940, 1039, 1160
Hsp92I	GRCGYC	1 cut(s)	706
Hsp92II	CATG	6 cut(s)	305, 1541, 1877, 2297, 2555, 2754
HspAI	GCGC	1 cut(s)	94
Ksp22I	TGATCA	1 cut(s)	328
LguI	GCTCTTC	1 cut(s)	1683
Lsp1109I	GCAGC	4 cut(s)	17, 1241, 2691, 2905
MabI	ACCWGGT	1 cut(s)	2545
MaeII	ACGT	5 cut(s)	71, 142, 940, 1039, 1160
MaeIII	GTNAC	5 cut(s)	81, 145, 168, 707, 2780
MflI	RGATCY	9 cut(s)	510, 675, 1063, 1180, 1799, 2005, 2496, 2635, 2825
MhlI	GDGCHC	5 cut(s)	1175, 1645, 2116, 2183, 2540
MlyI	GAGTC	2 cut(s)	176, 394
MmeI	TCCRAC	1 cut(s)	1418
MroXI	GAANNNNTTC	1 cut(s)	1052
MslI	CAYNNNNRTG	3 cut(s)	1455, 1542, 2703
MspA1I	CMGCKG	1 cut(s)	257
MspCI	CTTAAG	1 cut(s)	32
MspI	CCGG	2 cut(s)	702, 2076
MspR9I	CCNGG	3 cut(s)	702, 703, 2547
Mva1269I	GAATGC	5 cut(s)	625, 1230, 1276, 2005, 2532
MvaI	CCWGG	1 cut(s)	2547
MvnI	CGCG	2 cut(s)	354, 2453
MwoI	GCNNNNNNNGC	4 cut(s)	212, 802, 919, 2187
NciI	CCSGG	2 cut(s)	702, 703
NdeI	CATATG	2 cut(s)	442, 2872
NlaIII	CATG	6 cut(s)	305, 1541, 1877, 2297, 2555, 2754
NlaIV	GGNNCC	4 cut(s)	928, 1933, 2113, 2420
NmuCI	GTSAC	2 cut(s)	168, 707
NsbI	TGCGCA	1 cut(s)	95
NspI	RCATGY	1 cut(s)	2754
PaeI	GCATGC	1 cut(s)	2754
PagI	TCATGA	1 cut(s)	2551
PciSI	GCTCTTC	1 cut(s)	1683
PcsI	WCGNNNNNNNCGW	1 cut(s)	1166
PctI	GAATGC	5 cut(s)	625, 1230, 1276, 2005, 2532
PdmI	GAANNNNTTC	1 cut(s)	1052
PflMI	CCANNNNNTGG	1 cut(s)	1810
PkrI	GCNGC	4 cut(s)	7, 1256, 2681, 2920
PleI	GAGTC	2 cut(s)	175, 393
PpsI	GAGTC	2 cut(s)	175, 393
Ppu21I	YACGTR	1 cut(s)	1040
Psp124BI	GAGCTC	1 cut(s)	2183
Psp1406I	AACGTT	1 cut(s)	71
Psp6I	CCWGG	1 cut(s)	2545
PspEI	GGTNACC	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	2545
PspN4I	GGNNCC	4 cut(s)	928, 1933, 2113, 2420
PspPI	GGNCC	5 cut(s)	571, 653, 927, 1932, 2867
PstI	CTGCAG	3 cut(s)	179, 1285, 2681
PsuI	RGATCY	9 cut(s)	510, 675, 1063, 1180, 1799, 2005, 2496, 2635, 2825
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	9 cut(s)	112, 670, 1007, 1038, 1110, 1698, 1888, 2244, 2456
RsaNI	GTAC	9 cut(s)	111, 669, 1006, 1037, 1109, 1697, 1887, 2243, 2455
RseI	CAYNNNNRTG	3 cut(s)	1455, 1542, 2703
SacI	GAGCTC	1 cut(s)	2183
SalI	GTCGAC	1 cut(s)	2315
SapI	GCTCTTC	1 cut(s)	1683
SatI	GCNGC	4 cut(s)	6, 1255, 2680, 2919
Sau96I	GGNCC	5 cut(s)	571, 653, 927, 1932, 2867
ScaI	AGTACT	3 cut(s)	112, 670, 1110
SchI	GAGTC	2 cut(s)	176, 394
ScrFI	CCNGG	3 cut(s)	702, 703, 2547
SduI	GDGCHC	5 cut(s)	1175, 1645, 2116, 2183, 2540
SexAI	ACCWGGT	1 cut(s)	2545
SfcI	CTRYAG	4 cut(s)	175, 1281, 2070, 2677
SinI	GGWCC	3 cut(s)	571, 653, 2867
SmaI	CCCGGG	1 cut(s)	703
SmiMI	CAYNNNNRTG	3 cut(s)	1455, 1542, 2703
SmlI	CTYRAG	8 cut(s)	32, 216, 472, 682, 1890, 2325, 2878, 2926
SmoI	CTYRAG	8 cut(s)	32, 216, 472, 682, 1890, 2325, 2878, 2926
SnaBI	TACGTA	1 cut(s)	1040
SphI	GCATGC	1 cut(s)	2754
SsiI	CCGC	6 cut(s)	1349, 1794, 2451, 2604, 2694, 2754
SstI	GAGCTC	1 cut(s)	2183
StyD4I	CCNGG	3 cut(s)	700, 701, 2545
StyI	CCWWGG	3 cut(s)	1225, 1927, 2531
TaaI	ACNGT	5 cut(s)	535, 881, 1206, 2051, 2379
TaiI	ACGT	5 cut(s)	74, 145, 943, 1042, 1163
TaqI	TCGA	4 cut(s)	1306, 1560, 2046, 2316
TatI	WGTACW	5 cut(s)	110, 668, 1005, 1108, 1886
TscAI	CASTG	4 cut(s)	559, 1209, 1290, 2029
TseFI	GTSAC	2 cut(s)	168, 707
TseI	GCWGC	4 cut(s)	5, 1254, 2679, 2918
Tsp45I	GTSAC	2 cut(s)	168, 707
TspDTI	ATGAA	8 cut(s)	614, 808, 1136, 1677, 1772, 2310, 2568, 2954
TspGWI	ACGGA	1 cut(s)	2627
TspMI	CCCGGG	1 cut(s)	701
TspRI	CASTG	4 cut(s)	559, 1209, 1290, 2029
Van91I	CCANNNNNTGG	1 cut(s)	1810
Vha464I	CTTAAG	1 cut(s)	32
VneI	GTGCAC	1 cut(s)	2536
VpaK11BI	GGWCC	3 cut(s)	571, 653, 2867
XapI	RAATTY	6 cut(s)	1052, 1321, 1468, 2398, 2713, 2819
XbaI	TCTAGA	1 cut(s)	1715
XceI	RCATGY	1 cut(s)	2754
XmaI	CCCGGG	1 cut(s)	701
XmiI	GTMKAC	4 cut(s)	1166, 2121, 2316, 2794
XmnI	GAANNNNTTC	1 cut(s)	1052
ZrmI	AGTACT	3 cut(s)	112, 670, 1110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.