Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007686

Physical Location & Seq

Genomic Coordinates Reverse (-)

37806184 .. 37807290

Gene Structure 1107 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0265900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCGAGGACCAAGTCTCGGCCACTGAATTACTGGAGGAATTACTTTGAAACTGCGAAAGATACGAATATTTTCAGTATAATTGATCATGCCATCAAGGTGGCCGCTTCTGATTTTCCAAAAGACTTCAGTTTACAAAAGGACAGAATAGTTGCACGATTGTCTTCTATTCAGTGTTTAGGCAATGATGAAGAATCAGTTCATGGTGGTTGCGAAAGTGGATCCGATAGCGATGGCTGTGAAGGACTACTTGAGGCTGATGTTAATAAAGAGAGCAACCTAAGTGATGAGGCCGATCGTGTTTCGATTGATGACGCTTCTCAAAATATTGATGCAGAGGTCTTGAGGATCAAGGAAATTTTTGAAAACAGTGATAAGGAAAAGGCTAATGACGCTTCAATGCTCGAGTATCTGACGAGACTAAAGATGATGACCATGACTGTGGAGACTCTTGAGGCAACCGCAATTGGTAAAGTTGTTAGTGGTCTCAAAAAGCATGGATCCAAGCAGATTCGTGATCTTGCTCGAACACTTGTTGATGGGTGGAAAGTCGTGGTAAGTGAATATTTGGCTACCCAAAATTCTAAACAGTCCTCTTCAGATGTTCTTAGCAAACAAAACAAGAATGAACAACTAGTGATCAAGAAACAAGAAGTTGTAGCTGTGAAGCCAAATAAGGCCTCAAACAACAATGAAGAAAAGATGCAGCGCTTGGATGATGAAGTTGCAGCGCAAGTGAAAATCGAAGCCACAAAAAGGAAACTCCATGAGCGTTATGAGCAAATTGAGAACACCAAGAAGCAAAGGATGGTTCAAGTCTTGGATGATCTCCCCAAGCAAGGGCCTAAAGTGTGGGAACCAACTACTAATCTACATGGAAAGAAACCTGGTTCAGCACATGGACGGATATCCGATAAGTTGCACAGATTAAAAAAGCAAGCTGGTGTGGTCGGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009639 GO:0009640 GO:0009648 GO:0009657 GO:0009658 GO:0009791 GO:0009987 GO:0010017 GO:0010099 GO:0010100 GO:0010114 GO:0010218 GO:0010228 GO:0016043 GO:0016604 GO:0022414 GO:0023052 GO:0031461 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048519 GO:0048572 GO:0048573 GO:0048575 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0061458 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071840 GO:0080008 GO:0104004 GO:1902494 GO:1990234 GO:2000026 GO:2000028 GO:2000030 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

Pkinase WD40

Protein Analysis

319

Amino Acids

35.76

Weight (kDa)

8.22

Isoelectric Point (pI)

30.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med26	PF08711	137 - 184	6.3e-14	TFIIS helical bundle-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007686)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46340 AT2G46340
fragaria_vesca	FvH4_7g15970
malus_domestica	MD01G1076400.v1.1 MD07G1145300.v1.1
prunus_persica	Prupe.2G183800_v2.0.a1 Prupe.2G183800_v2.0.a1 Prupe.2G183800_v2.0.a1 Prupe.2G183800_v2.0.a1 Prupe.2G183800_v2.0.a1
pyrus_communis	pycom01g10530
rosa_chinensis	RchiOBHm_Chr1g0358871
rosa_laevigata	RLG00000027920
rosa_multiflora	Rmu_sc0008757.1_g000013
rosa_roxburghii	Rroxscaffold_4G00297550
rosa_rugosa	Rorug01G0265700 Rorug01G0265800 Rorug01G0265900 Rorug01G0266000
rosa_samantha	Rh1AG279700 Rh1BG246600 Rh1CG263700 Rh1DG275000
rosa_wichuraiana	Rw1G024850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	105, 462
AclWI	GGATC	5 cut(s)	216, 229, 356, 495, 508
AcoI	YGGCCR	2 cut(s)	20, 102
AcsI	RAATTY	2 cut(s)	357, 580
AcuI	CTGAAG	2 cut(s)	112, 582
AfeI	AGCGCT	1 cut(s)	710
AfiI	CCNNNNNNNGG	4 cut(s)	18, 756, 839, 840
AgsI	TTSAA	4 cut(s)	50, 365, 399, 815
AhlI	ACTAGT	1 cut(s)	634
AjnI	CCWGG	1 cut(s)	886
AluBI	AGCT	2 cut(s)	662, 941
AluI	AGCT	2 cut(s)	662, 941
Alw26I	GTCTC	4 cut(s)	21, 412, 440, 491
AlwI	GGATC	5 cut(s)	216, 229, 356, 495, 508
Ama87I	CYCGRG	1 cut(s)	404
Aor51HI	AGCGCT	1 cut(s)	710
AoxI	GGCC	5 cut(s)	20, 102, 291, 678, 842
ApeKI	GCWGC	2 cut(s)	706, 728
ApoI	RAATTY	2 cut(s)	357, 580
Asp700I	GAANNNNTTC	2 cut(s)	71, 198
AspLEI	GCGC	2 cut(s)	711, 733
AspS9I	GGNCC	2 cut(s)	9, 842
AvaI	CYCGRG	1 cut(s)	404
AvaII	GGWCC	1 cut(s)	9
BamHI	GGATCC	2 cut(s)	221, 500
BbsI	GAAGAC	1 cut(s)	156
BbvI	GCAGC	2 cut(s)	718, 740
BccI	CCATC	4 cut(s)	101, 227, 533, 802
BciT130I	CCWGG	1 cut(s)	888
BclI	TGATCA	2 cut(s)	85, 639
BcoDI	GTCTC	4 cut(s)	21, 412, 440, 491
BcuI	ACTAGT	1 cut(s)	634
BfaI	CTAG	1 cut(s)	635
BfoI	RGCGCY	1 cut(s)	712
BisI	GCNGC	3 cut(s)	105, 707, 729
BlsI	GCNGC	3 cut(s)	106, 708, 730
Bme1390I	CCNGG	1 cut(s)	888
Bme18I	GGWCC	1 cut(s)	9
BmeT110I	CYCGRG	1 cut(s)	404
BmgT120I	GGNCC	2 cut(s)	9, 842
BmiI	GGNNCC	3 cut(s)	223, 502, 858
BmrFI	CCNGG	1 cut(s)	888
BmsI	GCATC	2 cut(s)	322, 693
BpiI	GAAGAC	1 cut(s)	156
BpmI	CTGGAG	1 cut(s)	55
BpuEI	CTTGAG	3 cut(s)	272, 364, 473
BsaI	GGTCTC	1 cut(s)	491
Bsc4I	CCNNNNNNNGG	4 cut(s)	18, 756, 839, 840
Bse1I	ACTGG	1 cut(s)	38
Bse3DI	GCAATG	1 cut(s)	190
BseBI	CCWGG	1 cut(s)	888
BseGI	GGATG	3 cut(s)	721, 813, 829
BseLI	CCNNNNNNNGG	4 cut(s)	18, 756, 839, 840
BseMI	GCAATG	1 cut(s)	190
BseNI	ACTGG	1 cut(s)	38
BseXI	GCAGC	2 cut(s)	718, 740
Bsh1285I	CGRYCG	1 cut(s)	298
BshFI	GGCC	5 cut(s)	22, 104, 293, 680, 844
BsiEI	CGRYCG	1 cut(s)	298
BsiHKCI	CYCGRG	1 cut(s)	404
BslI	CCNNNNNNNGG	4 cut(s)	18, 756, 839, 840
BsmAI	GTCTC	4 cut(s)	21, 412, 440, 491
BsnI	GGCC	5 cut(s)	22, 104, 293, 680, 844
Bso31I	GGTCTC	1 cut(s)	491
BsoBI	CYCGRG	1 cut(s)	404
Bsp143I	GATC	8 cut(s)	85, 221, 295, 348, 500, 517, 639, 826
BspACI	CCGC	2 cut(s)	105, 462
BspANI	GGCC	5 cut(s)	22, 104, 293, 680, 844
BspLI	GGNNCC	3 cut(s)	223, 502, 858
BspPI	GGATC	5 cut(s)	216, 229, 356, 495, 508
BspTNI	GGTCTC	1 cut(s)	491
BsrDI	GCAATG	1 cut(s)	190
BsrI	ACTGG	1 cut(s)	38
BssMI	GATC	8 cut(s)	85, 221, 295, 348, 500, 517, 639, 826
Bst2UI	CCWGG	1 cut(s)	888
Bst4CI	ACNGT	3 cut(s)	371, 442, 591
Bst6I	CTCTTC	1 cut(s)	601
BstC8I	GCNNGC	1 cut(s)	939
BstDEI	CTNAG	2 cut(s)	281, 608
BstF5I	GGATG	3 cut(s)	721, 813, 829
BstH2I	RGCGCY	1 cut(s)	712
BstHHI	GCGC	2 cut(s)	711, 733
BstKTI	GATC	8 cut(s)	88, 224, 298, 351, 503, 520, 642, 829
BstMAI	GTCTC	4 cut(s)	21, 412, 440, 491
BstMBI	GATC	8 cut(s)	85, 221, 295, 348, 500, 517, 639, 826
BstMCI	CGRYCG	1 cut(s)	298
BstMWI	GCNNNNNNNGC	2 cut(s)	392, 778
BstNI	CCWGG	1 cut(s)	888
BstSCI	CCNGG	1 cut(s)	886
BstV1I	GCAGC	2 cut(s)	718, 740
BstV2I	GAAGAC	1 cut(s)	156
BstX2I	RGATCY	2 cut(s)	221, 500
BstXI	CCANNNNNNTGG	2 cut(s)	100, 442
BstYI	RGATCY	2 cut(s)	221, 500
BsuRI	GGCC	5 cut(s)	22, 104, 293, 680, 844
BtgZI	GCGATG	1 cut(s)	246
BtsCI	GGATG	3 cut(s)	721, 813, 829
BtsIMutI	CAGTG	3 cut(s)	23, 179, 376
Cac8I	GCNNGC	1 cut(s)	939
CfoI	GCGC	2 cut(s)	711, 733
Cfr13I	GGNCC	2 cut(s)	9, 842
CseI	GACGC	2 cut(s)	323, 401
CsiI	ACCWGGT	1 cut(s)	886
CviAII	CATG	7 cut(s)	89, 203, 436, 497, 767, 875, 899
DdeI	CTNAG	2 cut(s)	281, 608
DpnI	GATC	8 cut(s)	87, 223, 297, 350, 502, 519, 641, 828
DpnII	GATC	8 cut(s)	85, 221, 295, 348, 500, 517, 639, 826
EaeI	YGGCCR	2 cut(s)	20, 102
Eam1104I	CTCTTC	1 cut(s)	601
EarI	CTCTTC	1 cut(s)	601
Eco147I	AGGCCT	1 cut(s)	680
Eco31I	GGTCTC	1 cut(s)	491
Eco32I	GATATC	1 cut(s)	909
Eco47I	GGWCC	1 cut(s)	9
Eco47III	AGCGCT	1 cut(s)	710
Eco57I	CTGAAG	2 cut(s)	112, 582
Eco88I	CYCGRG	1 cut(s)	404
EcoO109I	RGGNCCY	1 cut(s)	842
EcoRII	CCWGG	1 cut(s)	886
EcoRV	GATATC	1 cut(s)	909
FaeI	CATG	7 cut(s)	92, 206, 439, 500, 770, 878, 902
FaiI	YATR	9 cut(s)	80, 90, 204, 437, 498, 768, 777, 876, 900
FalI	AAGNNNNNCTT	2 cut(s)	234, 266
FatI	CATG	7 cut(s)	88, 202, 435, 496, 766, 874, 898
FbaI	TGATCA	2 cut(s)	85, 639
Fnu4HI	GCNGC	3 cut(s)	105, 707, 729
FokI	GGATG	3 cut(s)	728, 820, 836
Fsp4HI	GCNGC	3 cut(s)	105, 707, 729
FspBI	CTAG	1 cut(s)	635
GlaI	GCGC	2 cut(s)	710, 732
GluI	GCNGC	3 cut(s)	105, 707, 729
GsuI	CTGGAG	1 cut(s)	55
HaeII	RGCGCY	1 cut(s)	712
HaeIII	GGCC	5 cut(s)	22, 104, 293, 680, 844
HgaI	GACGC	2 cut(s)	323, 401
HhaI	GCGC	2 cut(s)	711, 733
Hin1II	CATG	7 cut(s)	92, 206, 439, 500, 770, 878, 902
Hin6I	GCGC	2 cut(s)	709, 731
HinP1I	GCGC	2 cut(s)	709, 731
HinfI	GANTC	3 cut(s)	194, 448, 511
Hpy166II	GTNNAC	1 cut(s)	134
Hpy188I	TCNGA	5 cut(s)	112, 226, 414, 601, 913
Hpy188III	TCNNGA	4 cut(s)	343, 452, 515, 643
Hpy8I	GTNNAC	1 cut(s)	134
HpyAV	CCTTC	1 cut(s)	236
HpyCH4III	ACNGT	3 cut(s)	371, 442, 591
HpyCH4V	TGCA	5 cut(s)	155, 335, 706, 728, 922
HpyF10VI	GCNNNNNNNGC	2 cut(s)	392, 778
HpyF3I	CTNAG	2 cut(s)	281, 608
Hsp92II	CATG	7 cut(s)	92, 206, 439, 500, 770, 878, 902
HspAI	GCGC	2 cut(s)	709, 731
Ksp22I	TGATCA	2 cut(s)	85, 639
Kzo9I	GATC	8 cut(s)	85, 221, 295, 348, 500, 517, 639, 826
LpnPI	CCDG	4 cut(s)	19, 873, 900, 927
Lsp1109I	GCAGC	2 cut(s)	718, 740
LweI	GCATC	2 cut(s)	322, 693
MabI	ACCWGGT	1 cut(s)	886
MaeI	CTAG	1 cut(s)	635
MalI	GATC	8 cut(s)	87, 223, 297, 350, 502, 519, 641, 828
MboI	GATC	8 cut(s)	85, 221, 295, 348, 500, 517, 639, 826
MboII	GAAGA	4 cut(s)	156, 203, 588, 707
MfeI	CAATTG	1 cut(s)	465
MflI	RGATCY	2 cut(s)	221, 500
MluCI	AATT	7 cut(s)	28, 40, 81, 357, 465, 580, 783
MlyI	GAGTC	1 cut(s)	442
MnlI	CCTC	8 cut(s)	30, 247, 283, 331, 339, 448, 604, 691
MroXI	GAANNNNTTC	2 cut(s)	71, 198
MseI	TTAA	2 cut(s)	264, 929
MslI	CAYNNNNRTG	2 cut(s)	98, 440
MspR9I	CCNGG	1 cut(s)	888
MunI	CAATTG	1 cut(s)	465
MvaI	CCWGG	1 cut(s)	888
MwoI	GCNNNNNNNGC	2 cut(s)	392, 778
NdeII	GATC	8 cut(s)	85, 221, 295, 348, 500, 517, 639, 826
NlaIII	CATG	7 cut(s)	92, 206, 439, 500, 770, 878, 902
NlaIV	GGNNCC	3 cut(s)	223, 502, 858
PaeR7I	CTCGAG	1 cut(s)	404
PceI	AGGCCT	1 cut(s)	680
PdmI	GAANNNNTTC	2 cut(s)	71, 198
PfeI	GAWTC	2 cut(s)	194, 511
PflFI	GACNNNGTC	1 cut(s)	13
PkrI	GCNGC	3 cut(s)	106, 708, 730
Ple19I	CGATCG	1 cut(s)	298
PleI	GAGTC	1 cut(s)	442
PpsI	GAGTC	1 cut(s)	442
Psp6I	CCWGG	1 cut(s)	886
PspGI	CCWGG	1 cut(s)	886
PspN4I	GGNNCC	3 cut(s)	223, 502, 858
PspPI	GGNCC	2 cut(s)	9, 842
PspXI	VCTCGAGB	1 cut(s)	404
PsuI	RGATCY	2 cut(s)	221, 500
PsyI	GACNNNGTC	1 cut(s)	13
PvuI	CGATCG	1 cut(s)	298
RseI	CAYNNNNRTG	2 cut(s)	98, 440
SaqAI	TTAA	2 cut(s)	264, 929
SatI	GCNGC	3 cut(s)	105, 707, 729
Sau3AI	GATC	8 cut(s)	85, 221, 295, 348, 500, 517, 639, 826
Sau96I	GGNCC	2 cut(s)	9, 842
SchI	GAGTC	1 cut(s)	442
ScrFI	CCNGG	1 cut(s)	888
SetI	ASST	6 cut(s)	102, 282, 342, 664, 889, 943
SexAI	ACCWGGT	1 cut(s)	886
SfaNI	GCATC	2 cut(s)	322, 693
Sfr274I	CTCGAG	1 cut(s)	404
SinI	GGWCC	1 cut(s)	9
SlaI	CTCGAG	1 cut(s)	404
SmiMI	CAYNNNNRTG	2 cut(s)	98, 440
SmlI	CTYRAG	4 cut(s)	251, 343, 404, 452
SmoI	CTYRAG	4 cut(s)	251, 343, 404, 452
SpeI	ACTAGT	1 cut(s)	634
Sse9I	AATT	7 cut(s)	28, 40, 81, 357, 465, 580, 783
SseBI	AGGCCT	1 cut(s)	680
SsiI	CCGC	2 cut(s)	105, 462
SspI	AATATT	3 cut(s)	70, 328, 566
SspMI	CTAG	1 cut(s)	635
StuI	AGGCCT	1 cut(s)	680
StyD4I	CCNGG	1 cut(s)	886
TaaI	ACNGT	3 cut(s)	371, 442, 591
TaqI	TCGA	4 cut(s)	305, 405, 526, 744
TasI	AATT	7 cut(s)	28, 40, 81, 357, 465, 580, 783
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	2 cut(s)	194, 511
Tru1I	TTAA	2 cut(s)	264, 929
Tru9I	TTAA	2 cut(s)	264, 929
TscAI	CASTG	3 cut(s)	30, 179, 376
TseI	GCWGC	2 cut(s)	706, 728
TspDTI	ATGAA	5 cut(s)	191, 204, 642, 708, 735
TspGWI	ACGGA	1 cut(s)	919
TspRI	CASTG	3 cut(s)	30, 179, 376
Tth111I	GACNNNGTC	1 cut(s)	13
VpaK11BI	GGWCC	1 cut(s)	9
XapI	RAATTY	2 cut(s)	357, 580
XcmI	CCANNNNNNNNNTGG	1 cut(s)	30
XhoI	CTCGAG	1 cut(s)	404
XmnI	GAANNNNTTC	2 cut(s)	71, 198
XspI	CTAG	1 cut(s)	635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.