RLG00000029051

Flavin containing amine oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0018987
Physical Location & Seq
Reverse (-)
32011809 .. 32014428
2620 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029051

Sequence Viewer

Length: 522 bp
ATGTCACTGTTGGACCTGCTGTCCATGATGGAGAGTATGTCCGTTTTTGGTGTTGCTCACATCTTTGCCTCGTTCAATGATATCTTCATTCATGGGGATGTCCTCTTCATAATGCTATTGTTTGGATGGCTGGTACAGCTCTATTTGCAGTCACAGAACCAACTACTTCCTTTTGATTGTTATGATTCTAGCTTGGTGAGCAAAGCATTATGGATAGCAATGACTACTTATCCATGTAAAGGTGGATTGTGTTGTGCTGGGCTATTAGCTAGGTACCAGCAAGATGTTCTTGTCTTAGAGAGTCATGATCTACCTAGCGGTGCTGCTCATTCATTTGAGATTAAAGGATTTCAATTTGACTCCGGCCCATCTTTGTTCTCTGGTTTTCAATTAAAAGGCCCTCAGGCCAATCCTCTTGGACAATTTCTTGCCATTGATACCATTAATCAAGCTTGCAGCATGACCAAAATGGATAAAAACAGTATAAAGTGCTATGTCAAACTCAAAATCATTGTGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Amino_oxidase NAD_binding_8

Protein Analysis

174

Amino Acids

19.19

Weight (kDa)

5.44

Isoelectric Point (pI)

39.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_binding_8 PF13450 81 - 129 1e-09 NAD(P)-binding Rossmann-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018987)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0485591
rosa_laevigata RLG00000029051
rosa_multiflora Rmu_co8142194.1_g000001
rosa_roxburghii Rroxscaffold_1G00046670
rosa_samantha Rh2AG225500 Rh2DG232900 Rh3AG268600 Rh4DG181500 Rh5AG268200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 24
Acc65I GGTACC 1 cut(s) 273
AccB1I GGYRCC 1 cut(s) 273
AciI CCGC 1 cut(s) 318
AfaI GTAC 2 cut(s) 135, 275
AfiI CCNNNNNNNGG 1 cut(s) 239
AgsI TTSAA 3 cut(s) 76, 353, 389
AhdI GACNNNNNGTC 1 cut(s) 19
AluBI AGCT 4 cut(s) 139, 192, 269, 452
AluI AGCT 4 cut(s) 139, 192, 269, 452
AoxI GGCC 3 cut(s) 364, 397, 405
ApeKI GCWGC 2 cut(s) 323, 456
AseI ATTAAT 1 cut(s) 444
Asp718I GGTACC 1 cut(s) 273
AspS9I GGNCC 3 cut(s) 13, 365, 398
AsuHPI GGTGA 1 cut(s) 208
AvaII GGWCC 1 cut(s) 13
AxyI CCTNAGG 1 cut(s) 402
BanI GGYRCC 1 cut(s) 273
BbvI GCAGC 2 cut(s) 310, 468
BccI CCATC 3 cut(s) 22, 120, 376
BfaI CTAG 3 cut(s) 189, 270, 315
BfuAI ACCTGC 1 cut(s) 24
BisI GCNGC 2 cut(s) 324, 457
BlsI GCNGC 2 cut(s) 325, 458
Bme18I GGWCC 1 cut(s) 13
BmeRI GACNNNNNGTC 1 cut(s) 19
BmgT120I GGNCC 3 cut(s) 13, 365, 398
BmiI GGNNCC 1 cut(s) 275
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
Bsc4I CCNNNNNNNGG 1 cut(s) 239
Bse21I CCTNAGG 1 cut(s) 402
Bse3DI GCAATG 1 cut(s) 225
BseGI GGATG 2 cut(s) 103, 131
BseLI CCNNNNNNNGG 1 cut(s) 239
BseMI GCAATG 1 cut(s) 225
BseMII CTCAG 1 cut(s) 416
BseXI GCAGC 2 cut(s) 310, 468
BseYI CCCAGC 1 cut(s) 257
BshFI GGCC 3 cut(s) 366, 399, 407
BshNI GGYRCC 1 cut(s) 273
BsiSI CCGG 1 cut(s) 363
BslI CCNNNNNNNGG 1 cut(s) 239
BsnI GGCC 3 cut(s) 366, 399, 407
Bsp143I GATC 1 cut(s) 307
BspACI CCGC 1 cut(s) 318
BspANI GGCC 3 cut(s) 366, 399, 407
BspCNI CTCAG 1 cut(s) 415
BspHI TCATGA 1 cut(s) 304
BspLI GGNNCC 1 cut(s) 275
BspMI ACCTGC 1 cut(s) 24
BspT107I GGYRCC 1 cut(s) 273
BsrDI GCAATG 1 cut(s) 225
BssMI GATC 1 cut(s) 307
Bst4CI ACNGT 2 cut(s) 9, 482
Bst6I CTCTTC 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 454
BstDEI CTNAG 2 cut(s) 295, 402
BstF5I GGATG 2 cut(s) 103, 131
BstKTI GATC 1 cut(s) 310
BstMBI GATC 1 cut(s) 307
BstMWI GCNNNNNNNGC 3 cut(s) 136, 145, 198
BstV1I GCAGC 2 cut(s) 310, 468
Bsu36I CCTNAGG 1 cut(s) 402
BsuRI GGCC 3 cut(s) 366, 399, 407
BtsCI GGATG 2 cut(s) 103, 131
BtsIMutI CAGTG 1 cut(s) 5
BveI ACCTGC 1 cut(s) 24
Cac8I GCNNGC 1 cut(s) 454
CciI TCATGA 1 cut(s) 304
Cfr13I GGNCC 3 cut(s) 13, 365, 398
Csp6I GTAC 2 cut(s) 134, 274
CviAII CATG 5 cut(s) 25, 92, 234, 305, 460
CviJI RGCY 9 cut(s) 130, 139, 192, 262, 269, 366, 399, 407, 452
CviKI_1 RGCY 9 cut(s) 130, 139, 192, 262, 269, 366, 399, 407, 452
CviQI GTAC 2 cut(s) 134, 274
DdeI CTNAG 2 cut(s) 295, 402
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
DriI GACNNNNNGTC 1 cut(s) 19
Eam1104I CTCTTC 1 cut(s) 110
Eam1105I GACNNNNNGTC 1 cut(s) 19
EarI CTCTTC 1 cut(s) 110
Eco32I GATATC 1 cut(s) 82
Eco47I GGWCC 1 cut(s) 13
Eco81I CCTNAGG 1 cut(s) 402
EcoO109I RGGNCCY 1 cut(s) 398
EcoRV GATATC 1 cut(s) 82
FaeI CATG 5 cut(s) 28, 95, 237, 308, 463
FalI AAGNNNNNCTT 2 cut(s) 273, 305
FatI CATG 5 cut(s) 24, 91, 233, 304, 459
Fnu4HI GCNGC 2 cut(s) 324, 457
FokI GGATG 2 cut(s) 110, 138
Fsp4HI GCNGC 2 cut(s) 324, 457
FspBI CTAG 3 cut(s) 189, 270, 315
GluI GCNGC 2 cut(s) 324, 457
GsaI CCCAGC 1 cut(s) 261
HaeIII GGCC 3 cut(s) 366, 399, 407
HapII CCGG 1 cut(s) 363
Hin1II CATG 5 cut(s) 28, 95, 237, 308, 463
HindIII AAGCTT 1 cut(s) 450
HinfI GANTC 3 cut(s) 185, 301, 359
HpaII CCGG 1 cut(s) 363
HphI GGTGA 1 cut(s) 208
Hpy188III TCNNGA 1 cut(s) 305
HpyCH4III ACNGT 2 cut(s) 9, 482
HpyCH4V TGCA 2 cut(s) 148, 456
HpyF10VI GCNNNNNNNGC 3 cut(s) 136, 145, 198
HpyF3I CTNAG 2 cut(s) 295, 402
Hsp92II CATG 5 cut(s) 28, 95, 237, 308, 463
KpnI GGTACC 1 cut(s) 277
Kzo9I GATC 1 cut(s) 307
LpnPI CCDG 7 cut(s) 29, 116, 243, 290, 366, 376, 389
Lsp1109I GCAGC 2 cut(s) 310, 468
MaeI CTAG 3 cut(s) 189, 270, 315
MaeIII GTNAC 2 cut(s) 3, 150
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MboII GAAGA 2 cut(s) 76, 97
MluCI AATT 3 cut(s) 353, 389, 422
MlyI GAGTC 2 cut(s) 310, 353
MnlI CCTC 4 cut(s) 79, 113, 411, 423
MseI TTAA 3 cut(s) 342, 392, 444
MslI CAYNNNNRTG 1 cut(s) 96
MspI CCGG 1 cut(s) 363
MwoI GCNNNNNNNGC 3 cut(s) 136, 145, 198
NdeII GATC 1 cut(s) 307
NlaIII CATG 5 cut(s) 28, 95, 237, 308, 463
NlaIV GGNNCC 1 cut(s) 275
NmuCI GTSAC 2 cut(s) 3, 150
PagI TCATGA 1 cut(s) 304
PfeI GAWTC 1 cut(s) 185
PkrI GCNGC 2 cut(s) 325, 458
PleI GAGTC 2 cut(s) 309, 353
PpsI GAGTC 2 cut(s) 309, 353
PshBI ATTAAT 1 cut(s) 444
PspFI CCCAGC 1 cut(s) 257
PspN4I GGNNCC 1 cut(s) 275
PspPI GGNCC 3 cut(s) 13, 365, 398
RsaI GTAC 2 cut(s) 135, 275
RsaNI GTAC 2 cut(s) 134, 274
RseI CAYNNNNRTG 1 cut(s) 96
SaqAI TTAA 3 cut(s) 342, 392, 444
SatI GCNGC 2 cut(s) 324, 457
Sau3AI GATC 1 cut(s) 307
Sau96I GGNCC 3 cut(s) 13, 365, 398
SchI GAGTC 2 cut(s) 310, 353
SetI ASST 8 cut(s) 18, 141, 194, 244, 271, 275, 316, 454
SinI GGWCC 1 cut(s) 13
SmiMI CAYNNNNRTG 1 cut(s) 96
Sse9I AATT 3 cut(s) 353, 389, 422
SsiI CCGC 1 cut(s) 318
SspMI CTAG 3 cut(s) 189, 270, 315
TaaI ACNGT 2 cut(s) 9, 482
TasI AATT 3 cut(s) 353, 389, 422
TfiI GAWTC 1 cut(s) 185
Tru1I TTAA 3 cut(s) 342, 392, 444
Tru9I TTAA 3 cut(s) 342, 392, 444
TscAI CASTG 1 cut(s) 12
TseFI GTSAC 2 cut(s) 3, 150
TseI GCWGC 2 cut(s) 323, 456
Tsp45I GTSAC 2 cut(s) 3, 150
TspDTI ATGAA 4 cut(s) 76, 80, 97, 321
TspGWI ACGGA 1 cut(s) 31
TspRI CASTG 1 cut(s) 12
VpaK11BI GGWCC 1 cut(s) 13
VspI ATTAAT 1 cut(s) 444
XspI CTAG 3 cut(s) 189, 270, 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.