Rh5AG268200

Flavin containing amine oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0018987
Physical Location & Seq
Reverse (-)
35404669 .. 35408932
4264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG268200.1

Sequence Viewer

Length: 327 bp
ATGACAGGTAAAGGTAGATTGTATTGTGCTGGGTTATTATTTAGGTACCAGCAAGATGTTGTCTTAGAGAGTCATGATCTACCTGGCGGTGCTGCTCATTCATTTGAGATTAAAGGATTTCAATTTGACTCTGGCCCATCTTTGTTCTCTGGTTTTCAATTAAAAGGCCCTCAGGCCAGTCCTCTTGGACAAGTAACTTGTTCTTTCATTTTTCTTTTCTTACTTTTAAGTCATGATTTTATGGACCTACTTTTAGTGTTACTCAAGTATTACTCGAGATTATATTTCAGTATTACTAGGGGCTCTCTTGGTATCTTGAACTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Amino_oxidase NAD_binding_8

Protein Analysis

108

Amino Acids

12.03

Weight (kDa)

7.81

Isoelectric Point (pI)

21.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018987)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0485591
rosa_laevigata RLG00000029051
rosa_multiflora Rmu_co8142194.1_g000001
rosa_roxburghii Rroxscaffold_1G00046670
rosa_samantha Rh2AG225500 Rh2DG232900 Rh3AG268600 Rh4DG181500 Rh5AG268200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 325
Acc65I GGTACC 1 cut(s) 45
AccB1I GGYRCC 1 cut(s) 45
AciI CCGC 1 cut(s) 87
AfaI GTAC 1 cut(s) 47
AgsI TTSAA 3 cut(s) 122, 158, 319
AjnI CCWGG 1 cut(s) 82
Ama87I CYCGRG 1 cut(s) 274
AoxI GGCC 3 cut(s) 133, 166, 174
ApeKI GCWGC 1 cut(s) 92
Asp718I GGTACC 1 cut(s) 45
AspS9I GGNCC 3 cut(s) 134, 167, 244
AvaI CYCGRG 1 cut(s) 274
AvaII GGWCC 1 cut(s) 244
AxyI CCTNAGG 1 cut(s) 171
BanI GGYRCC 1 cut(s) 45
BanII GRGCYC 1 cut(s) 305
BbvI GCAGC 1 cut(s) 79
BccI CCATC 1 cut(s) 145
BciT130I CCWGG 1 cut(s) 84
BfaI CTAG 1 cut(s) 297
BisI GCNGC 1 cut(s) 93
BlsI GCNGC 1 cut(s) 94
Bme1390I CCNGG 1 cut(s) 84
Bme18I GGWCC 1 cut(s) 244
BmeT110I CYCGRG 1 cut(s) 274
BmgT120I GGNCC 3 cut(s) 134, 167, 244
BmiI GGNNCC 1 cut(s) 47
BmrFI CCNGG 1 cut(s) 84
BpuEI CTTGAG 1 cut(s) 248
Bse1I ACTGG 1 cut(s) 177
Bse21I CCTNAGG 1 cut(s) 171
BseBI CCWGG 1 cut(s) 84
BseMII CTCAG 1 cut(s) 185
BseNI ACTGG 1 cut(s) 177
BseXI GCAGC 1 cut(s) 79
BseYI CCCAGC 1 cut(s) 29
BshFI GGCC 3 cut(s) 135, 168, 176
BshNI GGYRCC 1 cut(s) 45
BsiHKCI CYCGRG 1 cut(s) 274
BsnI GGCC 3 cut(s) 135, 168, 176
BsoBI CYCGRG 1 cut(s) 274
Bsp1286I GDGCHC 1 cut(s) 305
Bsp143I GATC 1 cut(s) 76
BspACI CCGC 1 cut(s) 87
BspANI GGCC 3 cut(s) 135, 168, 176
BspCNI CTCAG 1 cut(s) 184
BspHI TCATGA 2 cut(s) 73, 232
BspLI GGNNCC 1 cut(s) 47
BspT107I GGYRCC 1 cut(s) 45
BsrI ACTGG 1 cut(s) 177
BssMI GATC 1 cut(s) 76
Bst2UI CCWGG 1 cut(s) 84
BstDEI CTNAG 2 cut(s) 64, 171
BstKTI GATC 1 cut(s) 79
BstMBI GATC 1 cut(s) 76
BstNI CCWGG 1 cut(s) 84
BstSCI CCNGG 1 cut(s) 82
BstV1I GCAGC 1 cut(s) 79
Bsu36I CCTNAGG 1 cut(s) 171
BsuRI GGCC 3 cut(s) 135, 168, 176
CciI TCATGA 2 cut(s) 73, 232
Cfr13I GGNCC 3 cut(s) 134, 167, 244
Csp6I GTAC 1 cut(s) 46
CviAII CATG 2 cut(s) 74, 233
CviJI RGCY 4 cut(s) 135, 168, 176, 303
CviKI_1 RGCY 4 cut(s) 135, 168, 176, 303
CviQI GTAC 1 cut(s) 46
DdeI CTNAG 2 cut(s) 64, 171
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
Eco24I GRGCYC 1 cut(s) 305
Eco47I GGWCC 1 cut(s) 244
Eco81I CCTNAGG 1 cut(s) 171
Eco88I CYCGRG 1 cut(s) 274
EcoO109I RGGNCCY 1 cut(s) 167
EcoRII CCWGG 1 cut(s) 82
EcoT38I GRGCYC 1 cut(s) 305
FaeI CATG 2 cut(s) 77, 236
FaiI YATR 5 cut(s) 75, 234, 242, 283, 325
FatI CATG 2 cut(s) 73, 232
Fnu4HI GCNGC 1 cut(s) 93
FriOI GRGCYC 1 cut(s) 305
Fsp4HI GCNGC 1 cut(s) 93
FspBI CTAG 1 cut(s) 297
GluI GCNGC 1 cut(s) 93
GsaI CCCAGC 1 cut(s) 33
HaeIII GGCC 3 cut(s) 135, 168, 176
Hin1II CATG 2 cut(s) 77, 236
HinfI GANTC 2 cut(s) 70, 128
Hpy188III TCNNGA 4 cut(s) 74, 233, 276, 316
HpyF3I CTNAG 2 cut(s) 64, 171
Hsp92II CATG 2 cut(s) 77, 236
KpnI GGTACC 1 cut(s) 49
Kzo9I GATC 1 cut(s) 76
LpnPI CCDG 8 cut(s) 15, 62, 69, 96, 117, 135, 158, 190
Lsp1109I GCAGC 1 cut(s) 79
MaeI CTAG 1 cut(s) 297
MaeIII GTNAC 2 cut(s) 193, 258
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MhlI GDGCHC 1 cut(s) 305
MluCI AATT 2 cut(s) 122, 158
MlyI GAGTC 2 cut(s) 79, 122
MnlI CCTC 2 cut(s) 180, 192
MseI TTAA 3 cut(s) 111, 161, 227
MspR9I CCNGG 1 cut(s) 84
MvaI CCWGG 1 cut(s) 84
NdeII GATC 1 cut(s) 76
NlaIII CATG 2 cut(s) 77, 236
NlaIV GGNNCC 1 cut(s) 47
PaeR7I CTCGAG 1 cut(s) 274
PagI TCATGA 2 cut(s) 73, 232
PkrI GCNGC 1 cut(s) 94
PleI GAGTC 2 cut(s) 78, 122
PpsI GAGTC 2 cut(s) 78, 122
PsiI TTATAA 1 cut(s) 325
Psp6I CCWGG 1 cut(s) 82
PspFI CCCAGC 1 cut(s) 29
PspGI CCWGG 1 cut(s) 82
PspN4I GGNNCC 1 cut(s) 47
PspPI GGNCC 3 cut(s) 134, 167, 244
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
SaqAI TTAA 3 cut(s) 111, 161, 227
SatI GCNGC 1 cut(s) 93
Sau3AI GATC 1 cut(s) 76
Sau96I GGNCC 3 cut(s) 134, 167, 244
SchI GAGTC 2 cut(s) 79, 122
ScrFI CCNGG 1 cut(s) 84
SduI GDGCHC 1 cut(s) 305
SetI ASST 5 cut(s) 10, 16, 47, 85, 249
Sfr274I CTCGAG 1 cut(s) 274
SinI GGWCC 1 cut(s) 244
SlaI CTCGAG 1 cut(s) 274
SmlI CTYRAG 2 cut(s) 263, 274
SmoI CTYRAG 2 cut(s) 263, 274
Sse9I AATT 2 cut(s) 122, 158
SsiI CCGC 1 cut(s) 87
SspMI CTAG 1 cut(s) 297
StyD4I CCNGG 1 cut(s) 82
TaqI TCGA 1 cut(s) 275
TasI AATT 2 cut(s) 122, 158
Tru1I TTAA 3 cut(s) 111, 161, 227
Tru9I TTAA 3 cut(s) 111, 161, 227
TseI GCWGC 1 cut(s) 92
TspDTI ATGAA 2 cut(s) 90, 196
VpaK11BI GGWCC 1 cut(s) 244
XhoI CTCGAG 1 cut(s) 274
XspI CTAG 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.