Rh2DG232900

Flavin containing amine oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0018987
Physical Location & Seq
Forward (+)
23150716 .. 23162736
12021 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG232900.1

Sequence Viewer

Length: 279 bp
ATGGAATTGAAGTATACTGGAACTAGGGATGTAATAGGTGAAGGGGAATCAAATGGAGGAAATCCTGATATTAAGAGCATGTACCAGCAAGATGTTCTTGTCTTAGAGAGTCATGATCTACCTGGCGGTGTTGCTCATTCATTTGAGATTAAAGGATTTCAATTTGACTCCGGCCCATCTTTGTTCTCTGGTTTTCAATTAAAAGGCCCTCAGGCCAATCCTCTTGGACAAGTGAGAGCTAAGAATGGGGCATGGCTATTAAGGGAATCCTGCGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Amino_oxidase NAD_binding_8

Protein Analysis

92

Amino Acids

9.95

Weight (kDa)

5.19

Isoelectric Point (pI)

24.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_binding_8 PF13450 30 - 65 1.1e-06 NAD(P)-binding Rossmann-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018987)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0485591
rosa_laevigata RLG00000029051
rosa_multiflora Rmu_co8142194.1_g000001
rosa_roxburghii Rroxscaffold_1G00046670
rosa_samantha Rh2AG225500 Rh2DG232900 Rh3AG268600 Rh4DG181500 Rh5AG268200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 14
AciI CCGC 1 cut(s) 126
AfaI GTAC 1 cut(s) 83
AgsI TTSAA 3 cut(s) 10, 161, 197
AjnI CCWGG 1 cut(s) 121
AluBI AGCT 1 cut(s) 239
AluI AGCT 1 cut(s) 239
AoxI GGCC 3 cut(s) 172, 205, 213
AspS9I GGNCC 2 cut(s) 173, 206
AsuHPI GGTGA 1 cut(s) 50
AxyI CCTNAGG 1 cut(s) 210
BccI CCATC 1 cut(s) 184
BciT130I CCWGG 1 cut(s) 123
BfaI CTAG 1 cut(s) 24
Bme1390I CCNGG 1 cut(s) 123
BmgT120I GGNCC 2 cut(s) 173, 206
BmrFI CCNGG 1 cut(s) 123
Bse1I ACTGG 1 cut(s) 22
Bse21I CCTNAGG 1 cut(s) 210
BseBI CCWGG 1 cut(s) 123
BseGI GGATG 1 cut(s) 34
BseMII CTCAG 1 cut(s) 224
BseNI ACTGG 1 cut(s) 22
BshFI GGCC 3 cut(s) 174, 207, 215
BsiSI CCGG 1 cut(s) 171
BsnI GGCC 3 cut(s) 174, 207, 215
Bsp143I GATC 1 cut(s) 115
BspACI CCGC 1 cut(s) 126
BspANI GGCC 3 cut(s) 174, 207, 215
BspCNI CTCAG 1 cut(s) 223
BspHI TCATGA 1 cut(s) 112
BsrI ACTGG 1 cut(s) 22
BssMI GATC 1 cut(s) 115
BssNAI GTATAC 1 cut(s) 15
Bst1107I GTATAC 1 cut(s) 15
Bst2UI CCWGG 1 cut(s) 123
BstDEI CTNAG 3 cut(s) 103, 210, 240
BstF5I GGATG 1 cut(s) 34
BstKTI GATC 1 cut(s) 118
BstMBI GATC 1 cut(s) 115
BstNI CCWGG 1 cut(s) 123
BstNSI RCATGY 1 cut(s) 82
BstSCI CCNGG 1 cut(s) 121
BstZ17I GTATAC 1 cut(s) 15
Bsu36I CCTNAGG 1 cut(s) 210
BsuRI GGCC 3 cut(s) 174, 207, 215
BtsCI GGATG 1 cut(s) 34
CciI TCATGA 1 cut(s) 112
Cfr13I GGNCC 2 cut(s) 173, 206
Csp6I GTAC 1 cut(s) 82
CviAII CATG 3 cut(s) 79, 113, 252
CviJI RGCY 5 cut(s) 174, 207, 215, 239, 256
CviKI_1 RGCY 5 cut(s) 174, 207, 215, 239, 256
CviQI GTAC 1 cut(s) 82
DdeI CTNAG 3 cut(s) 103, 210, 240
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
Eco81I CCTNAGG 1 cut(s) 210
EcoO109I RGGNCCY 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 121
FaeI CATG 3 cut(s) 82, 116, 255
FaiI YATR 5 cut(s) 15, 80, 114, 253, 277
FalI AAGNNNNNCTT 2 cut(s) 81, 113
FatI CATG 3 cut(s) 78, 112, 251
FblI GTMKAC 1 cut(s) 14
FokI GGATG 1 cut(s) 41
FspBI CTAG 1 cut(s) 24
HaeIII GGCC 3 cut(s) 174, 207, 215
HapII CCGG 1 cut(s) 171
Hin1II CATG 3 cut(s) 82, 116, 255
HinfI GANTC 4 cut(s) 47, 109, 167, 266
HpaII CCGG 1 cut(s) 171
HphI GGTGA 1 cut(s) 50
Hpy166II GTNNAC 1 cut(s) 15
Hpy188III TCNNGA 2 cut(s) 65, 113
Hpy8I GTNNAC 1 cut(s) 15
HpyAV CCTTC 1 cut(s) 35
HpyF3I CTNAG 3 cut(s) 103, 210, 240
Hsp92II CATG 3 cut(s) 82, 116, 255
Kzo9I GATC 1 cut(s) 115
LpnPI CCDG 8 cut(s) 3, 78, 98, 108, 135, 174, 184, 197
MaeI CTAG 1 cut(s) 24
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MluCI AATT 3 cut(s) 5, 161, 197
MlyI GAGTC 2 cut(s) 118, 161
MnlI CCTC 3 cut(s) 50, 219, 231
MseI TTAA 4 cut(s) 72, 150, 200, 260
MspI CCGG 1 cut(s) 171
MspR9I CCNGG 1 cut(s) 123
MvaI CCWGG 1 cut(s) 123
NdeII GATC 1 cut(s) 115
NlaIII CATG 3 cut(s) 82, 116, 255
NspI RCATGY 1 cut(s) 82
PagI TCATGA 1 cut(s) 112
PfeI GAWTC 2 cut(s) 47, 266
PleI GAGTC 2 cut(s) 117, 161
PpsI GAGTC 2 cut(s) 117, 161
Psp6I CCWGG 1 cut(s) 121
PspGI CCWGG 1 cut(s) 121
PspPI GGNCC 2 cut(s) 173, 206
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
SaqAI TTAA 4 cut(s) 72, 150, 200, 260
Sau3AI GATC 1 cut(s) 115
Sau96I GGNCC 2 cut(s) 173, 206
SchI GAGTC 2 cut(s) 118, 161
ScrFI CCNGG 1 cut(s) 123
SetI ASST 3 cut(s) 40, 124, 241
Sse9I AATT 3 cut(s) 5, 161, 197
SsiI CCGC 1 cut(s) 126
SspMI CTAG 1 cut(s) 24
StyD4I CCNGG 1 cut(s) 121
TasI AATT 3 cut(s) 5, 161, 197
TfiI GAWTC 2 cut(s) 47, 266
Tru1I TTAA 4 cut(s) 72, 150, 200, 260
Tru9I TTAA 4 cut(s) 72, 150, 200, 260
TspDTI ATGAA 1 cut(s) 129
XceI RCATGY 1 cut(s) 82
XmiI GTMKAC 1 cut(s) 14
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.