Rh4DG181500

Flavin containing amine oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0018987
Physical Location & Seq
Reverse (-)
36071910 .. 36073009
1100 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG181500.1

Sequence Viewer

Length: 342 bp
ATGACAGGTAAATGTGGATTGTGTTGTGTTGGGCTATCAGCTAGGTACCAGCAAGATGTTCTTGTCTTAGAGAGTCATGATCTACCTGGCGGTGCTGCTCATTCATTTGAGATTAAAGGATTTCAATTTGACTCCGGCCCATCTTTGTTCTCTGGTTTTCAATTAAAAGGCCCTCAAGCCAATCCTCTTGGACAAATTGCTAGAATTATATGGTACACTGGCCGTCTTCTCTTCAAAACTTTGATGCCTAATCTAGCTGTTGCTATATCAGAAGGATTGGCCCTACTTTTTCTTCATTTCGTGATCCACTTGAAGAATCAGAATTGTTACATTATTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Amino_oxidase NAD_binding_8

Protein Analysis

113

Amino Acids

12.32

Weight (kDa)

8.43

Isoelectric Point (pI)

17.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_binding_8 PF13450 3 - 53 6.2e-09 NAD(P)-binding Rossmann-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018987)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0485591
rosa_laevigata RLG00000029051
rosa_multiflora Rmu_co8142194.1_g000001
rosa_roxburghii Rroxscaffold_1G00046670
rosa_samantha Rh2AG225500 Rh2DG232900 Rh3AG268600 Rh4DG181500 Rh5AG268200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 45
AccB1I GGYRCC 1 cut(s) 45
AciI CCGC 1 cut(s) 90
AclWI GGATC 1 cut(s) 298
AcoI YGGCCR 1 cut(s) 220
AfaI GTAC 2 cut(s) 47, 215
AgsI TTSAA 4 cut(s) 125, 161, 235, 313
AjnI CCWGG 1 cut(s) 85
AluBI AGCT 2 cut(s) 41, 257
AluI AGCT 2 cut(s) 41, 257
AlwI GGATC 1 cut(s) 298
AoxI GGCC 4 cut(s) 136, 169, 220, 279
ApeKI GCWGC 1 cut(s) 95
Asp718I GGTACC 1 cut(s) 45
AspS9I GGNCC 3 cut(s) 137, 170, 280
BanI GGYRCC 1 cut(s) 45
BbsI GAAGAC 1 cut(s) 218
BbvI GCAGC 1 cut(s) 82
BccI CCATC 1 cut(s) 148
BceAI ACGGC 1 cut(s) 207
BciT130I CCWGG 1 cut(s) 87
BfaI CTAG 3 cut(s) 42, 201, 254
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
Bme1390I CCNGG 1 cut(s) 87
BmgT120I GGNCC 3 cut(s) 137, 170, 280
BmiI GGNNCC 1 cut(s) 47
BmrFI CCNGG 1 cut(s) 87
BmsI GCATC 1 cut(s) 234
BpiI GAAGAC 1 cut(s) 218
BpuEI CTTGAG 1 cut(s) 159
Bse1I ACTGG 1 cut(s) 223
BseBI CCWGG 1 cut(s) 87
BseNI ACTGG 1 cut(s) 223
BseXI GCAGC 1 cut(s) 82
BshFI GGCC 4 cut(s) 138, 171, 222, 281
BshNI GGYRCC 1 cut(s) 45
BsiSI CCGG 1 cut(s) 135
BsnI GGCC 4 cut(s) 138, 171, 222, 281
Bsp143I GATC 2 cut(s) 79, 303
BspACI CCGC 1 cut(s) 90
BspANI GGCC 4 cut(s) 138, 171, 222, 281
BspHI TCATGA 1 cut(s) 76
BspLI GGNNCC 1 cut(s) 47
BspPI GGATC 1 cut(s) 298
BspT107I GGYRCC 1 cut(s) 45
BsrI ACTGG 1 cut(s) 223
BssMI GATC 2 cut(s) 79, 303
Bst2UI CCWGG 1 cut(s) 87
Bst6I CTCTTC 1 cut(s) 236
BstDEI CTNAG 1 cut(s) 67
BstKTI GATC 2 cut(s) 82, 306
BstMBI GATC 2 cut(s) 79, 303
BstNI CCWGG 1 cut(s) 87
BstSCI CCNGG 1 cut(s) 85
BstV1I GCAGC 1 cut(s) 82
BstV2I GAAGAC 1 cut(s) 218
BsuRI GGCC 4 cut(s) 138, 171, 222, 281
BtsIMutI CAGTG 1 cut(s) 216
CciI TCATGA 1 cut(s) 76
Cfr13I GGNCC 3 cut(s) 137, 170, 280
Csp6I GTAC 2 cut(s) 46, 214
CviAII CATG 1 cut(s) 77
CviJI RGCY 9 cut(s) 34, 41, 138, 171, 179, 222, 257, 281, 339
CviKI_1 RGCY 9 cut(s) 34, 41, 138, 171, 179, 222, 257, 281, 339
CviQI GTAC 2 cut(s) 46, 214
DdeI CTNAG 1 cut(s) 67
DpnI GATC 2 cut(s) 81, 305
DpnII GATC 2 cut(s) 79, 303
EaeI YGGCCR 1 cut(s) 220
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
EcoO109I RGGNCCY 1 cut(s) 170
EcoRII CCWGG 1 cut(s) 85
FaeI CATG 1 cut(s) 80
FaiI YATR 4 cut(s) 78, 209, 211, 266
FalI AAGNNNNNCTT 2 cut(s) 45, 77
FatI CATG 1 cut(s) 76
Fnu4HI GCNGC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 3 cut(s) 42, 201, 254
GluI GCNGC 1 cut(s) 96
HaeIII GGCC 4 cut(s) 138, 171, 222, 281
HapII CCGG 1 cut(s) 135
Hin1II CATG 1 cut(s) 80
HinfI GANTC 3 cut(s) 73, 131, 316
HpaII CCGG 1 cut(s) 135
Hpy166II GTNNAC 1 cut(s) 216
Hpy188I TCNGA 2 cut(s) 271, 321
Hpy188III TCNNGA 2 cut(s) 77, 301
Hpy8I GTNNAC 1 cut(s) 216
HpyAV CCTTC 1 cut(s) 266
HpyF3I CTNAG 1 cut(s) 67
Hsp92II CATG 1 cut(s) 80
KpnI GGTACC 1 cut(s) 49
Kzo9I GATC 2 cut(s) 79, 303
LpnPI CCDG 6 cut(s) 62, 72, 99, 138, 148, 204
Lsp1109I GCAGC 1 cut(s) 82
LweI GCATC 1 cut(s) 234
MaeI CTAG 3 cut(s) 42, 201, 254
MaeIII GTNAC 1 cut(s) 326
MalI GATC 2 cut(s) 81, 305
MboI GATC 2 cut(s) 79, 303
MboII GAAGA 4 cut(s) 218, 223, 284, 325
MluCI AATT 5 cut(s) 125, 161, 195, 204, 322
MlyI GAGTC 2 cut(s) 82, 125
MnlI CCTC 2 cut(s) 183, 195
MseI TTAA 2 cut(s) 114, 164
MspI CCGG 1 cut(s) 135
MspR9I CCNGG 1 cut(s) 87
MvaI CCWGG 1 cut(s) 87
NdeII GATC 2 cut(s) 79, 303
NlaIII CATG 1 cut(s) 80
NlaIV GGNNCC 1 cut(s) 47
PagI TCATGA 1 cut(s) 76
PfeI GAWTC 1 cut(s) 316
PkrI GCNGC 1 cut(s) 97
PleI GAGTC 2 cut(s) 81, 125
PpsI GAGTC 2 cut(s) 81, 125
Psp6I CCWGG 1 cut(s) 85
PspGI CCWGG 1 cut(s) 85
PspN4I GGNNCC 1 cut(s) 47
PspPI GGNCC 3 cut(s) 137, 170, 280
RsaI GTAC 2 cut(s) 47, 215
RsaNI GTAC 2 cut(s) 46, 214
SaqAI TTAA 2 cut(s) 114, 164
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 2 cut(s) 79, 303
Sau96I GGNCC 3 cut(s) 137, 170, 280
SchI GAGTC 2 cut(s) 82, 125
ScrFI CCNGG 1 cut(s) 87
SetI ASST 5 cut(s) 10, 43, 47, 88, 259
SfaNI GCATC 1 cut(s) 234
SmlI CTYRAG 1 cut(s) 174
SmoI CTYRAG 1 cut(s) 174
Sse9I AATT 5 cut(s) 125, 161, 195, 204, 322
SsiI CCGC 1 cut(s) 90
SspMI CTAG 3 cut(s) 42, 201, 254
StyD4I CCNGG 1 cut(s) 85
TasI AATT 5 cut(s) 125, 161, 195, 204, 322
TfiI GAWTC 1 cut(s) 316
Tru1I TTAA 2 cut(s) 114, 164
Tru9I TTAA 2 cut(s) 114, 164
TscAI CASTG 1 cut(s) 223
TseI GCWGC 1 cut(s) 95
TspDTI ATGAA 2 cut(s) 93, 284
TspRI CASTG 1 cut(s) 223
XspI CTAG 3 cut(s) 42, 201, 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.