Rmu_co8142194.1_g000001

Flavin containing amine oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8142194.1
OG0018987
Physical Location & Seq
Forward (+)
1 .. 561
561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8142194.1_g000001.1.cds

Sequence Viewer

Length: 420 bp
ttcccaaatactctgcagtttctccaacctctttctcacgctagcaccaaatccctcagaaaatcagttttggcgcgaaactcttcaaatggctctgtctccctcaaacaaatcaaaactaccccactcccaggcaaagcagaggctgatgttgtagtcattgggagtggtataggtggattgtgttgtgccgggctattagctaggtaccagcaagatgtccttgtcttagagagtcatgatctacccggcggtgctgctcattcatttgagattaaaggctttcaatttgactccggcccatctttgttctctggttttcaatccaaaggccctcaggccaatcctcttggacaagtaacttgttctttcatttttcttttcttactttcaactcatgatttatggacctacttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Amino_oxidase NAD_binding_8

Protein Analysis

139

Amino Acids

14.86

Weight (kDa)

8.55

Isoelectric Point (pI)

30.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018987)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0485591
rosa_laevigata RLG00000029051
rosa_multiflora Rmu_co8142194.1_g000001
rosa_roxburghii Rroxscaffold_1G00046670
rosa_samantha Rh2AG225500 Rh2DG232900 Rh3AG268600 Rh4DG181500 Rh5AG268200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 207
AccB1I GGYRCC 1 cut(s) 207
AccII CGCG 1 cut(s) 76
AciI CCGC 1 cut(s) 252
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 1 cut(s) 131
AgsI TTSAA 4 cut(s) 87, 287, 323, 393
AjnI CCWGG 1 cut(s) 130
AluBI AGCT 1 cut(s) 203
AluI AGCT 1 cut(s) 203
Alw26I GTCTC 1 cut(s) 103
AlwNI CAGNNNCTG 1 cut(s) 146
AoxI GGCC 3 cut(s) 298, 331, 339
ApeKI GCWGC 1 cut(s) 257
Asp700I GAANNNNTTC 1 cut(s) 82
Asp718I GGTACC 1 cut(s) 207
AspLEI GCGC 1 cut(s) 76
AspS9I GGNCC 3 cut(s) 299, 332, 408
AsuC2I CCSGG 2 cut(s) 193, 249
AsuNHI GCTAGC 1 cut(s) 41
AvaII GGWCC 1 cut(s) 408
AxyI CCTNAGG 1 cut(s) 336
BanI GGYRCC 1 cut(s) 207
BbvI GCAGC 1 cut(s) 244
BccI CCATC 1 cut(s) 310
BciT130I CCWGG 1 cut(s) 132
BcnI CCSGG 2 cut(s) 193, 249
BcoDI GTCTC 1 cut(s) 103
BfaI CTAG 2 cut(s) 42, 204
BfmI CTRYAG 1 cut(s) 14
BisI GCNGC 1 cut(s) 258
BlsI GCNGC 1 cut(s) 259
Bme1390I CCNGG 3 cut(s) 132, 193, 249
Bme18I GGWCC 1 cut(s) 408
BmgT120I GGNCC 3 cut(s) 299, 332, 408
BmiI GGNNCC 1 cut(s) 209
BmrFI CCNGG 3 cut(s) 132, 193, 249
BmtI GCTAGC 1 cut(s) 45
BpuMI CCSGG 2 cut(s) 193, 249
BsaJI CCNNGG 1 cut(s) 130
Bsc4I CCNNNNNNNGG 1 cut(s) 131
Bse21I CCTNAGG 1 cut(s) 336
BseBI CCWGG 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 130
BseLI CCNNNNNNNGG 1 cut(s) 131
BseMII CTCAG 2 cut(s) 70, 350
BseXI GCAGC 1 cut(s) 244
Bsh1236I CGCG 1 cut(s) 76
BshFI GGCC 3 cut(s) 300, 333, 341
BshNI GGYRCC 1 cut(s) 207
BsiSI CCGG 3 cut(s) 192, 249, 297
BslI CCNNNNNNNGG 1 cut(s) 131
BsmAI GTCTC 1 cut(s) 103
BsnI GGCC 3 cut(s) 300, 333, 341
Bsp143I GATC 1 cut(s) 241
BspACI CCGC 1 cut(s) 252
BspANI GGCC 3 cut(s) 300, 333, 341
BspCNI CTCAG 2 cut(s) 69, 349
BspFNI CGCG 1 cut(s) 76
BspHI TCATGA 2 cut(s) 238, 397
BspLI GGNNCC 1 cut(s) 209
BspMAI CTGCAG 1 cut(s) 18
BspOI GCTAGC 1 cut(s) 45
BspT107I GGYRCC 1 cut(s) 207
BssECI CCNNGG 1 cut(s) 130
BssMI GATC 1 cut(s) 241
Bst2UI CCWGG 1 cut(s) 132
Bst6I CTCTTC 1 cut(s) 88
BstC8I GCNNGC 1 cut(s) 43
BstDEI CTNAG 3 cut(s) 56, 229, 336
BstFNI CGCG 1 cut(s) 76
BstHHI GCGC 1 cut(s) 76
BstKTI GATC 1 cut(s) 244
BstMAI GTCTC 1 cut(s) 103
BstMBI GATC 1 cut(s) 241
BstNI CCWGG 1 cut(s) 132
BstSCI CCNGG 3 cut(s) 130, 191, 247
BstSFI CTRYAG 1 cut(s) 14
BstUI CGCG 1 cut(s) 76
BstV1I GCAGC 1 cut(s) 244
Bsu36I CCTNAGG 1 cut(s) 336
BsuRI GGCC 3 cut(s) 300, 333, 341
Cac8I GCNNGC 1 cut(s) 43
CaiI CAGNNNCTG 1 cut(s) 146
CciI TCATGA 2 cut(s) 238, 397
CfoI GCGC 1 cut(s) 76
Cfr13I GGNCC 3 cut(s) 299, 332, 408
Csp6I GTAC 1 cut(s) 208
CviAII CATG 2 cut(s) 239, 398
CviJI RGCY 8 cut(s) 93, 146, 196, 203, 282, 300, 333, 341
CviKI_1 RGCY 8 cut(s) 93, 146, 196, 203, 282, 300, 333, 341
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 3 cut(s) 56, 229, 336
DpnI GATC 1 cut(s) 243
DpnII GATC 1 cut(s) 241
Eam1104I CTCTTC 1 cut(s) 88
EarI CTCTTC 1 cut(s) 88
Eco47I GGWCC 1 cut(s) 408
Eco81I CCTNAGG 1 cut(s) 336
EcoO109I RGGNCCY 1 cut(s) 332
EcoRII CCWGG 1 cut(s) 130
FaeI CATG 2 cut(s) 242, 401
FaiI YATR 4 cut(s) 173, 240, 399, 406
FalI AAGNNNNNCTT 2 cut(s) 207, 239
FatI CATG 2 cut(s) 238, 397
Fnu4HI GCNGC 1 cut(s) 258
Fsp4HI GCNGC 1 cut(s) 258
FspBI CTAG 2 cut(s) 42, 204
GlaI GCGC 1 cut(s) 75
GluI GCNGC 1 cut(s) 258
HaeIII GGCC 3 cut(s) 300, 333, 341
HapII CCGG 3 cut(s) 192, 249, 297
HhaI GCGC 1 cut(s) 76
Hin1II CATG 2 cut(s) 242, 401
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HinfI GANTC 2 cut(s) 235, 293
HpaII CCGG 3 cut(s) 192, 249, 297
Hpy188I TCNGA 1 cut(s) 59
Hpy188III TCNNGA 2 cut(s) 239, 398
HpyCH4V TGCA 1 cut(s) 16
HpyF3I CTNAG 3 cut(s) 56, 229, 336
Hsp92II CATG 2 cut(s) 242, 401
HspAI GCGC 1 cut(s) 74
KpnI GGTACC 1 cut(s) 211
Kzo9I GATC 1 cut(s) 241
LpnPI CCDG 8 cut(s) 117, 144, 205, 224, 262, 300, 310, 323
Lsp1109I GCAGC 1 cut(s) 244
MaeI CTAG 2 cut(s) 42, 204
MaeIII GTNAC 1 cut(s) 358
MalI GATC 1 cut(s) 243
MboI GATC 1 cut(s) 241
MboII GAAGA 1 cut(s) 75
MluCI AATT 1 cut(s) 287
MlyI GAGTC 2 cut(s) 244, 287
MmeI TCCRAC 1 cut(s) 49
MnlI CCTC 6 cut(s) 39, 65, 113, 136, 345, 357
MroXI GAANNNNTTC 1 cut(s) 82
MseI TTAA 1 cut(s) 276
MspI CCGG 3 cut(s) 192, 249, 297
MspR9I CCNGG 3 cut(s) 132, 193, 249
MvaI CCWGG 1 cut(s) 132
MvnI CGCG 1 cut(s) 76
NciI CCSGG 2 cut(s) 193, 249
NdeII GATC 1 cut(s) 241
NheI GCTAGC 1 cut(s) 41
NlaIII CATG 2 cut(s) 242, 401
NlaIV GGNNCC 1 cut(s) 209
PagI TCATGA 2 cut(s) 238, 397
PdmI GAANNNNTTC 1 cut(s) 82
PkrI GCNGC 1 cut(s) 259
PleI GAGTC 2 cut(s) 243, 287
PpsI GAGTC 2 cut(s) 243, 287
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
PspN4I GGNNCC 1 cut(s) 209
PspPI GGNCC 3 cut(s) 299, 332, 408
PstI CTGCAG 1 cut(s) 18
PstNI CAGNNNCTG 1 cut(s) 146
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
SaqAI TTAA 1 cut(s) 276
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 1 cut(s) 241
Sau96I GGNCC 3 cut(s) 299, 332, 408
SchI GAGTC 2 cut(s) 244, 287
ScrFI CCNGG 3 cut(s) 132, 193, 249
SetI ASST 5 cut(s) 31, 178, 205, 209, 413
SfcI CTRYAG 1 cut(s) 14
SinI GGWCC 1 cut(s) 408
Sse9I AATT 1 cut(s) 287
SsiI CCGC 1 cut(s) 252
SspMI CTAG 2 cut(s) 42, 204
StyD4I CCNGG 3 cut(s) 130, 191, 247
TasI AATT 1 cut(s) 287
Tru1I TTAA 1 cut(s) 276
Tru9I TTAA 1 cut(s) 276
TseI GCWGC 1 cut(s) 257
TspDTI ATGAA 2 cut(s) 255, 361
VpaK11BI GGWCC 1 cut(s) 408
XmnI GAANNNNTTC 1 cut(s) 82
XspI CTAG 2 cut(s) 42, 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.